Wall clock time and date at job start Sat Mar 6 2021 06:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35703 * 116.99713 * 2 1 4 4 C 1.38985 * 119.90716 * 0.02562 * 3 2 1 5 5 C 1.37704 * 120.09367 * 179.97438 * 4 3 2 6 6 C 1.39779 * 119.90469 * 359.97438 * 5 4 3 7 7 C 1.47463 * 120.09020 * 179.97438 * 6 5 4 8 8 O 1.21510 * 119.99714 * 180.02562 * 7 6 5 9 9 O 1.34745 * 120.00279 * 0.02562 * 7 6 5 10 10 C 1.45202 * 116.99930 * 180.02562 * 9 7 6 11 11 Si 1.86297 * 109.47110 * 74.99769 * 10 9 7 12 12 C 1.86299 * 109.47182 * 60.00167 * 11 10 9 13 13 C 1.86308 * 109.46786 * 179.97438 * 11 10 9 14 14 C 1.86295 * 109.47210 * 299.99673 * 11 10 9 15 15 C 1.39818 * 119.81150 * 359.73755 * 6 5 4 16 16 C 1.37658 * 119.90328 * 0.54081 * 15 6 5 17 17 C 1.50701 * 119.95002 * 179.73215 * 16 15 6 18 18 O 1.42895 * 109.47079 * 254.72689 * 17 16 15 19 19 Si 1.86301 * 109.47149 * 14.72184 * 17 16 15 20 20 H 1.48506 * 109.47302 * 59.99966 * 19 17 16 21 21 H 1.48503 * 109.47334 * 300.00099 * 19 17 16 22 22 H 1.48500 * 109.47376 * 180.02562 * 19 17 16 23 23 H 1.09000 * 109.46754 * 60.00636 * 1 2 3 24 24 H 1.09004 * 109.47045 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47352 * 300.00481 * 1 2 3 26 26 H 1.08003 * 119.95663 * 0.02562 * 4 3 2 27 27 H 1.08001 * 120.04679 * 180.02562 * 5 4 3 28 28 H 1.09002 * 109.46782 * 194.99971 * 10 9 7 29 29 H 1.09001 * 109.46868 * 314.99411 * 10 9 7 30 30 H 1.09002 * 109.47233 * 59.99478 * 12 11 10 31 31 H 1.08995 * 109.47144 * 179.97438 * 12 11 10 32 32 H 1.08998 * 109.46917 * 300.00188 * 12 11 10 33 33 H 1.08995 * 109.46931 * 60.00185 * 13 11 10 34 34 H 1.09003 * 109.46771 * 180.02562 * 13 11 10 35 35 H 1.09002 * 109.46957 * 300.00110 * 13 11 10 36 36 H 1.09001 * 109.46845 * 60.00439 * 14 11 10 37 37 H 1.09003 * 109.47070 * 179.97438 * 14 11 10 38 38 H 1.08995 * 109.47578 * 300.00471 * 14 11 10 39 39 H 1.07999 * 120.04619 * 180.26842 * 15 6 5 40 40 H 1.09001 * 109.47380 * 134.72085 * 17 16 15 41 41 H 0.96708 * 113.99763 * 299.99687 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2861 2.3735 0.0005 5 6 1.9073 3.6025 0.0011 6 6 3.3030 3.6780 0.0016 7 6 3.9724 4.9919 0.0016 8 8 5.1858 5.0555 0.0016 9 8 3.2385 6.1220 0.0016 10 6 3.9645 7.3795 0.0010 11 14 4.6681 7.6895 -1.6959 12 6 3.2816 7.7724 -2.9374 13 6 5.5990 9.3034 -1.6967 14 6 5.8268 6.3034 -2.1505 15 6 4.0626 2.5041 0.0072 16 6 3.4336 1.2797 0.0008 17 6 4.2513 0.0138 0.0007 18 8 4.2173 -0.5751 -1.3009 19 14 6.0132 0.4126 0.4560 20 1 6.0487 1.0246 1.8086 21 1 6.5766 1.3659 -0.5336 22 1 6.8192 -0.8347 0.4552 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 0.2077 2.3144 0.0014 27 1 1.3168 4.5068 0.0019 28 1 3.2865 8.1905 0.2671 29 1 4.7757 7.3310 0.7275 30 1 2.6036 8.5835 -2.6714 31 1 3.6932 7.9543 -3.9301 32 1 2.7366 6.8285 -2.9369 33 1 6.4101 9.2553 -0.9703 34 1 6.0103 9.4850 -2.6897 35 1 4.9206 10.1142 -1.4308 36 1 5.2818 5.3594 -2.1501 37 1 6.2381 6.4846 -3.1435 38 1 6.6380 6.2549 -1.4241 39 1 5.1412 2.5580 0.0120 40 1 3.8378 -0.6860 0.7270 41 1 3.3292 -0.8090 -1.6036 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_13444980_4858416.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 06:39:40 Heat of formation + Delta-G solvation = -162.393608 kcal Electronic energy + Delta-G solvation = -22667.195516 eV Core-core repulsion = 19250.654972 eV Total energy + Delta-G solvation = -3416.540543 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.124 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.87596 -41.03088 -38.72812 -37.50912 -37.15293 -33.05108 -31.79495 -29.70229 -28.92690 -28.47206 -28.31575 -27.92333 -26.69228 -24.58571 -23.11893 -21.61111 -19.48249 -18.89670 -18.09527 -17.93781 -17.32705 -17.18152 -16.99327 -16.36219 -15.65267 -15.51440 -15.06663 -14.77568 -14.57384 -14.38070 -14.14664 -14.00696 -13.81893 -13.76907 -13.59502 -13.40510 -13.29126 -13.19514 -13.03555 -12.94822 -12.63280 -12.50708 -12.23311 -12.11070 -11.72163 -11.48596 -11.21939 -11.01201 -10.89812 -10.74041 -10.37717 -10.20410 -9.46587 -0.36363 0.06123 1.24770 1.40354 1.52738 1.56352 1.62662 1.63795 1.85606 1.97311 2.04963 2.05549 2.53909 2.59246 3.41063 3.57550 3.76699 3.83522 3.90909 4.02528 4.05468 4.08108 4.21266 4.23972 4.39542 4.48109 4.63904 4.67161 4.68958 4.69651 4.74017 4.76820 4.93396 4.94141 4.99105 5.01224 5.11342 5.37306 5.41327 5.45153 5.51307 5.78263 6.05177 6.61124 6.84328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.310 6.310 3 C 0.177 3.823 4 C -0.219 4.219 5 C -0.017 4.017 6 C -0.158 4.158 7 C 0.496 3.504 8 O -0.491 6.491 9 O -0.333 6.333 10 C -0.237 4.237 11 Si 0.997 3.003 12 C -0.445 4.445 13 C -0.446 4.446 14 C -0.437 4.437 15 C -0.021 4.021 16 C -0.158 4.158 17 C -0.079 4.079 18 O -0.536 6.536 19 Si 1.003 2.997 20 H -0.246 1.246 21 H -0.247 1.247 22 H -0.252 1.252 23 H 0.062 0.938 24 H 0.107 0.893 25 H 0.061 0.939 26 H 0.142 0.858 27 H 0.145 0.855 28 H 0.110 0.890 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.147 0.853 40 H 0.080 0.920 41 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.141 0.276 0.517 5.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.222 6.222 3 C 0.130 3.870 4 C -0.238 4.238 5 C -0.035 4.035 6 C -0.159 4.159 7 C 0.341 3.659 8 O -0.380 6.380 9 O -0.249 6.249 10 C -0.356 4.356 11 Si 1.193 2.807 12 C -0.553 4.553 13 C -0.554 4.554 14 C -0.546 4.546 15 C -0.039 4.039 16 C -0.159 4.159 17 C -0.188 4.188 18 O -0.341 6.341 19 Si 0.822 3.178 20 H -0.169 1.169 21 H -0.170 1.170 22 H -0.176 1.176 23 H 0.080 0.920 24 H 0.125 0.875 25 H 0.080 0.920 26 H 0.160 0.840 27 H 0.163 0.837 28 H 0.128 0.872 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.164 0.836 40 H 0.098 0.902 41 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -3.252 0.402 0.828 3.380 hybrid contribution -1.566 0.124 -0.014 1.571 sum -4.818 0.525 0.814 4.914 Atomic orbital electron populations 1.23229 0.77143 1.04848 1.01983 1.86029 1.22392 1.26476 1.87314 1.19140 0.91431 0.84686 0.91732 1.21287 1.00804 0.91734 1.09933 1.21324 0.93049 0.98169 0.90954 1.18905 0.93755 0.90138 1.13140 1.20992 0.85935 0.85044 0.73905 1.90852 1.14479 1.87545 1.45140 1.86452 1.40179 1.14341 1.83968 1.28352 1.02856 0.84071 1.20329 0.79738 0.67562 0.68375 0.65061 1.26055 1.13143 1.04674 1.11471 1.26036 1.08532 1.15832 1.04995 1.26251 1.11045 1.12463 1.04795 1.21066 1.00799 0.89787 0.92212 1.19556 0.91162 0.96244 1.08921 1.25167 1.12301 0.92328 0.88961 1.86709 1.33676 1.81996 1.31714 0.84620 0.72335 0.80742 0.80129 1.16915 1.17020 1.17552 0.91967 0.87504 0.92016 0.84048 0.83677 0.87182 0.90016 0.91093 0.90961 0.91079 0.90946 0.90645 0.91067 0.91489 0.91873 0.90367 0.83583 0.90172 0.78337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.08 9.81 101.05 0.99 0.91 16 2 O -0.31 0.20 9.37 -18.81 -0.18 0.02 16 3 C 0.18 0.08 6.63 -39.01 -0.26 -0.18 16 4 C -0.22 0.16 9.01 -39.50 -0.36 -0.20 16 5 C -0.02 0.00 9.61 -39.20 -0.38 -0.38 16 6 C -0.16 -0.35 5.87 -104.97 -0.62 -0.96 16 7 C 0.50 1.55 6.67 34.49 0.23 1.78 16 8 O -0.49 -2.36 12.05 -19.27 -0.23 -2.60 16 9 O -0.33 -0.58 9.16 -40.61 -0.37 -0.95 16 10 C -0.24 0.01 5.40 101.05 0.55 0.55 16 11 Si 1.00 -0.95 12.12 -169.99 -2.06 -3.01 16 12 C -0.45 0.26 8.65 101.05 0.87 1.14 16 13 C -0.45 0.47 8.65 101.05 0.87 1.34 16 14 C -0.44 -0.78 7.10 101.05 0.72 -0.06 16 15 C -0.02 -0.05 8.20 -39.20 -0.32 -0.37 16 16 C -0.16 -0.26 5.28 -104.54 -0.55 -0.81 16 17 C -0.08 -0.10 2.33 36.01 0.08 -0.01 16 18 O -0.54 -1.04 12.65 -35.23 -0.45 -1.48 16 19 Si 1.00 1.68 25.73 -169.99 -4.37 -2.70 16 20 H -0.25 -0.34 7.11 56.52 0.40 0.06 16 21 H -0.25 -0.68 6.74 56.52 0.38 -0.30 16 22 H -0.25 -0.58 7.11 56.52 0.40 -0.18 16 23 H 0.06 -0.28 7.65 -51.93 -0.40 -0.68 16 24 H 0.11 -0.54 8.14 -51.93 -0.42 -0.96 16 25 H 0.06 -0.27 7.65 -51.93 -0.40 -0.67 16 26 H 0.14 -0.46 6.27 -52.48 -0.33 -0.79 16 27 H 0.15 -0.24 7.60 -52.49 -0.40 -0.64 16 28 H 0.11 -0.23 7.96 -51.93 -0.41 -0.64 16 29 H 0.08 0.04 7.52 -51.93 -0.39 -0.36 16 30 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 31 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 32 H 0.07 0.00 7.96 -51.93 -0.41 -0.42 16 33 H 0.07 -0.06 7.96 -51.93 -0.41 -0.48 16 34 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 35 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 36 H 0.07 0.21 6.28 -51.93 -0.33 -0.12 16 37 H 0.06 0.07 7.96 -51.93 -0.41 -0.35 16 38 H 0.08 0.22 7.42 -51.93 -0.39 -0.17 16 39 H 0.15 0.40 4.46 -52.49 -0.23 0.17 16 40 H 0.08 0.00 7.82 -51.93 -0.41 -0.41 16 41 H 0.37 -0.22 8.60 45.56 0.39 0.17 16 LS Contribution 338.35 15.07 5.10 5.10 Total: 0.00 -5.47 338.35 -6.15 -11.61 By element: Atomic # 1 Polarization: -3.32 SS G_CDS: -5.42 Total: -8.74 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: 1.84 Total: 2.74 kcal Atomic # 8 Polarization: -3.78 SS G_CDS: -1.23 Total: -5.01 kcal Atomic # 14 Polarization: 0.72 SS G_CDS: -6.43 Total: -5.71 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -5.47 -6.15 -11.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13444980_4858416.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.781 kcal (2) G-P(sol) polarization free energy of solvation -5.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds