Wall clock time and date at job start Sat Mar 6 2021 06:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35703 * 116.99713 * 2 1 4 4 C 1.38985 * 119.90716 * 0.02562 * 3 2 1 5 5 C 1.37704 * 120.09367 * 179.97438 * 4 3 2 6 6 C 1.39779 * 119.90469 * 359.97438 * 5 4 3 7 7 C 1.47463 * 120.09020 * 179.97438 * 6 5 4 8 8 O 1.21510 * 119.99714 * 180.02562 * 7 6 5 9 9 O 1.34745 * 120.00279 * 0.02562 * 7 6 5 10 10 C 1.45202 * 116.99930 * 180.02562 * 9 7 6 11 11 Si 1.86297 * 109.47110 * 74.99769 * 10 9 7 12 12 C 1.86299 * 109.47182 * 60.00167 * 11 10 9 13 13 C 1.86308 * 109.46786 * 179.97438 * 11 10 9 14 14 C 1.86295 * 109.47210 * 299.99673 * 11 10 9 15 15 C 1.39818 * 119.81150 * 359.73755 * 6 5 4 16 16 C 1.37658 * 119.90328 * 0.54081 * 15 6 5 17 17 C 1.50701 * 119.95002 * 179.73215 * 16 15 6 18 18 O 1.42895 * 109.47079 * 254.72689 * 17 16 15 19 19 Si 1.86301 * 109.47149 * 14.72184 * 17 16 15 20 20 H 1.48506 * 109.47302 * 59.99966 * 19 17 16 21 21 H 1.48503 * 109.47334 * 300.00099 * 19 17 16 22 22 H 1.48500 * 109.47376 * 180.02562 * 19 17 16 23 23 H 1.09000 * 109.46754 * 60.00636 * 1 2 3 24 24 H 1.09004 * 109.47045 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47352 * 300.00481 * 1 2 3 26 26 H 1.08003 * 119.95663 * 0.02562 * 4 3 2 27 27 H 1.08001 * 120.04679 * 180.02562 * 5 4 3 28 28 H 1.09002 * 109.46782 * 194.99971 * 10 9 7 29 29 H 1.09001 * 109.46868 * 314.99411 * 10 9 7 30 30 H 1.09002 * 109.47233 * 59.99478 * 12 11 10 31 31 H 1.08995 * 109.47144 * 179.97438 * 12 11 10 32 32 H 1.08998 * 109.46917 * 300.00188 * 12 11 10 33 33 H 1.08995 * 109.46931 * 60.00185 * 13 11 10 34 34 H 1.09003 * 109.46771 * 180.02562 * 13 11 10 35 35 H 1.09002 * 109.46957 * 300.00110 * 13 11 10 36 36 H 1.09001 * 109.46845 * 60.00439 * 14 11 10 37 37 H 1.09003 * 109.47070 * 179.97438 * 14 11 10 38 38 H 1.08995 * 109.47578 * 300.00471 * 14 11 10 39 39 H 1.07999 * 120.04619 * 180.26842 * 15 6 5 40 40 H 1.09001 * 109.47380 * 134.72085 * 17 16 15 41 41 H 0.96708 * 113.99763 * 299.99687 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2861 2.3735 0.0005 5 6 1.9073 3.6025 0.0011 6 6 3.3030 3.6780 0.0016 7 6 3.9724 4.9919 0.0016 8 8 5.1858 5.0555 0.0016 9 8 3.2385 6.1220 0.0016 10 6 3.9645 7.3795 0.0010 11 14 4.6681 7.6895 -1.6959 12 6 3.2816 7.7724 -2.9374 13 6 5.5990 9.3034 -1.6967 14 6 5.8268 6.3034 -2.1505 15 6 4.0626 2.5041 0.0072 16 6 3.4336 1.2797 0.0008 17 6 4.2513 0.0138 0.0007 18 8 4.2173 -0.5751 -1.3009 19 14 6.0132 0.4126 0.4560 20 1 6.0487 1.0246 1.8086 21 1 6.5766 1.3659 -0.5336 22 1 6.8192 -0.8347 0.4552 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 0.2077 2.3144 0.0014 27 1 1.3168 4.5068 0.0019 28 1 3.2865 8.1905 0.2671 29 1 4.7757 7.3310 0.7275 30 1 2.6036 8.5835 -2.6714 31 1 3.6932 7.9543 -3.9301 32 1 2.7366 6.8285 -2.9369 33 1 6.4101 9.2553 -0.9703 34 1 6.0103 9.4850 -2.6897 35 1 4.9206 10.1142 -1.4308 36 1 5.2818 5.3594 -2.1501 37 1 6.2381 6.4846 -3.1435 38 1 6.6380 6.2549 -1.4241 39 1 5.1412 2.5580 0.0120 40 1 3.8378 -0.6860 0.7270 41 1 3.3292 -0.8090 -1.6036 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13444980_4858416.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 06:39:40 Heat of formation + Delta-G solvation = -155.780481 kcal Electronic energy + Delta-G solvation = -22666.908749 eV Core-core repulsion = 19250.654972 eV Total energy + Delta-G solvation = -3416.253777 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.93165 -41.09947 -38.69960 -37.61608 -37.31772 -33.09158 -31.81348 -29.68419 -28.75758 -28.42038 -28.37436 -27.88363 -26.74152 -24.62719 -23.13278 -21.71731 -19.46318 -18.96677 -18.17699 -18.03889 -17.46384 -17.19253 -16.86756 -16.42047 -15.68865 -15.56405 -15.06418 -14.78467 -14.63048 -14.44293 -14.11994 -13.99306 -13.83711 -13.75670 -13.55742 -13.42401 -13.25432 -13.19805 -13.07221 -12.95758 -12.58287 -12.44391 -12.35989 -12.10414 -11.94043 -11.67567 -11.29761 -11.11037 -10.86611 -10.78844 -10.40762 -10.23477 -9.47154 -0.43652 0.03149 1.10498 1.32510 1.41047 1.44189 1.49942 1.59286 1.86727 1.87032 2.05513 2.12298 2.51042 2.56156 3.40015 3.59704 3.69740 3.85556 3.91927 4.04887 4.18723 4.25678 4.36569 4.41244 4.47288 4.65776 4.68831 4.72014 4.76192 4.77694 4.79649 4.80863 4.81713 4.86216 4.92346 5.03091 5.08705 5.29196 5.38288 5.51301 5.59463 5.61467 6.16124 6.63170 6.67749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.318 6.318 3 C 0.180 3.820 4 C -0.212 4.212 5 C -0.011 4.011 6 C -0.178 4.178 7 C 0.493 3.507 8 O -0.520 6.520 9 O -0.331 6.331 10 C -0.255 4.255 11 Si 1.054 2.946 12 C -0.451 4.451 13 C -0.449 4.449 14 C -0.460 4.460 15 C -0.038 4.038 16 C -0.170 4.170 17 C -0.073 4.073 18 O -0.550 6.550 19 Si 1.014 2.986 20 H -0.244 1.244 21 H -0.273 1.273 22 H -0.260 1.260 23 H 0.074 0.926 24 H 0.120 0.880 25 H 0.072 0.928 26 H 0.173 0.827 27 H 0.165 0.835 28 H 0.137 0.863 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.047 0.953 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.132 0.868 40 H 0.096 0.904 41 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.569 0.805 0.609 7.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.230 6.230 3 C 0.133 3.867 4 C -0.231 4.231 5 C -0.029 4.029 6 C -0.180 4.180 7 C 0.340 3.660 8 O -0.411 6.411 9 O -0.247 6.247 10 C -0.373 4.373 11 Si 1.246 2.754 12 C -0.559 4.559 13 C -0.558 4.558 14 C -0.565 4.565 15 C -0.056 4.056 16 C -0.171 4.171 17 C -0.182 4.182 18 O -0.357 6.357 19 Si 0.837 3.163 20 H -0.168 1.168 21 H -0.198 1.198 22 H -0.184 1.184 23 H 0.092 0.908 24 H 0.138 0.862 25 H 0.090 0.910 26 H 0.190 0.810 27 H 0.182 0.818 28 H 0.155 0.845 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.149 0.851 40 H 0.114 0.886 41 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -5.680 0.895 0.929 5.825 hybrid contribution -0.827 -0.084 -0.062 0.834 sum -6.507 0.811 0.867 6.615 Atomic orbital electron populations 1.23524 0.75359 1.06217 1.03061 1.86029 1.24209 1.25878 1.86879 1.19190 0.91036 0.85627 0.90895 1.21603 1.02212 0.90772 1.08484 1.21558 0.92079 0.99435 0.89864 1.18996 0.94883 0.89445 1.14656 1.21269 0.85739 0.85765 0.73258 1.90837 1.15660 1.87946 1.46660 1.86437 1.40096 1.14520 1.83605 1.28683 1.03561 0.83953 1.21074 0.78879 0.66045 0.66458 0.63970 1.26104 1.13344 1.04869 1.11586 1.26055 1.08694 1.15951 1.05095 1.26606 1.11650 1.13685 1.04553 1.21051 1.00364 0.90721 0.93486 1.19562 0.92123 0.95720 1.09688 1.25017 1.11394 0.92715 0.89098 1.86676 1.34810 1.82087 1.32104 0.84452 0.73026 0.79364 0.79486 1.16760 1.19825 1.18425 0.90788 0.86156 0.90951 0.81019 0.81753 0.84526 0.90757 0.89821 0.90792 0.91657 0.91209 0.90490 0.89740 0.93355 0.91693 0.92091 0.85069 0.88609 0.77072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.12 9.81 113.37 1.11 1.00 16 2 O -0.32 0.81 9.37 -90.24 -0.85 -0.03 16 3 C 0.18 0.05 6.63 22.64 0.15 0.20 16 4 C -0.21 0.62 9.01 22.32 0.20 0.82 16 5 C -0.01 0.00 9.61 22.52 0.22 0.22 16 6 C -0.18 -1.02 5.87 -20.09 -0.12 -1.14 16 7 C 0.49 3.99 6.67 70.25 0.47 4.45 16 8 O -0.52 -6.60 12.05 19.80 0.24 -6.36 16 9 O -0.33 -1.30 9.16 -56.56 -0.52 -1.81 16 10 C -0.26 -0.01 5.40 113.37 0.61 0.60 16 11 Si 1.05 -1.67 12.12 68.60 0.83 -0.84 16 12 C -0.45 0.83 8.65 113.37 0.98 1.81 16 13 C -0.45 1.19 8.65 113.37 0.98 2.17 16 14 C -0.46 -2.81 7.10 113.37 0.80 -2.01 16 15 C -0.04 -0.27 8.20 22.52 0.18 -0.09 16 16 C -0.17 -0.71 5.28 -19.81 -0.10 -0.81 16 17 C -0.07 -0.25 2.33 71.24 0.17 -0.09 16 18 O -0.55 -2.57 12.65 -148.98 -1.89 -4.46 16 19 Si 1.01 5.72 25.73 68.60 1.77 7.49 16 20 H -0.24 -1.21 7.11 99.48 0.71 -0.50 16 21 H -0.27 -2.63 6.74 99.48 0.67 -1.96 16 22 H -0.26 -1.70 7.11 99.48 0.71 -1.00 16 23 H 0.07 -0.86 7.65 -2.39 -0.02 -0.88 16 24 H 0.12 -1.47 8.14 -2.39 -0.02 -1.49 16 25 H 0.07 -0.82 7.65 -2.39 -0.02 -0.84 16 26 H 0.17 -1.62 6.27 -2.91 -0.02 -1.64 16 27 H 0.16 -0.78 7.60 -2.91 -0.02 -0.80 16 28 H 0.14 -0.77 7.96 -2.39 -0.02 -0.78 16 29 H 0.07 0.14 7.52 -2.39 -0.02 0.12 16 30 H 0.08 -0.34 7.96 -2.39 -0.02 -0.36 16 31 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 32 H 0.06 -0.02 7.96 -2.39 -0.02 -0.04 16 33 H 0.07 -0.12 7.96 -2.39 -0.02 -0.14 16 34 H 0.08 -0.20 7.96 -2.39 -0.02 -0.21 16 35 H 0.08 -0.42 7.96 -2.39 -0.02 -0.43 16 36 H 0.05 0.46 6.28 -2.39 -0.01 0.45 16 37 H 0.06 0.29 7.96 -2.39 -0.02 0.27 16 38 H 0.06 0.55 7.42 -2.39 -0.02 0.53 16 39 H 0.13 1.21 4.46 -2.91 -0.01 1.20 16 40 H 0.10 0.00 7.82 -2.39 -0.02 -0.02 16 41 H 0.38 -0.37 8.60 -74.05 -0.64 -1.00 16 Total: 0.00 -14.93 338.35 6.36 -8.58 By element: Atomic # 1 Polarization: -10.80 SS G_CDS: 1.12 Total: -9.69 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 5.65 Total: 7.13 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -3.01 Total: -12.67 kcal Atomic # 14 Polarization: 4.05 SS G_CDS: 2.60 Total: 6.65 kcal Total: -14.93 6.36 -8.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13444980_4858416.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.203 kcal (2) G-P(sol) polarization free energy of solvation -14.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds