Wall clock time and date at job start Sat Mar 6 2021 05:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86298 * 109.47456 * 2 1 4 4 C 1.50697 * 109.47087 * 239.99740 * 2 1 3 5 5 C 1.31734 * 122.55339 * 105.03015 * 4 2 1 6 6 S 1.75274 * 111.48012 * 179.72841 * 5 4 2 7 7 C 1.75966 * 92.23051 * 359.97438 * 6 5 4 8 8 C 1.40095 * 130.37045 * 180.02562 * 7 6 5 9 9 C 1.36023 * 120.67338 * 179.97438 * 8 7 6 10 10 C 1.40259 * 120.18541 * 0.02562 * 9 8 7 11 11 C 1.47497 * 119.95285 * 179.97438 * 10 9 8 12 12 O 1.21496 * 120.00225 * 180.02562 * 11 10 9 13 13 O 1.34747 * 120.00026 * 0.02710 * 11 10 9 14 14 C 1.45198 * 117.00086 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47105 * 180.02562 * 14 13 11 16 16 H 1.09007 * 112.84911 * 316.19656 * 15 14 13 17 17 C 1.53787 * 113.61650 * 87.50146 * 15 14 13 18 18 C 1.53778 * 87.08125 * 139.98248 * 17 15 14 19 19 H 1.08993 * 113.61661 * 89.11628 * 18 17 15 20 20 O 1.42900 * 113.61478 * 220.02085 * 18 17 15 21 21 C 1.53784 * 87.08399 * 334.56772 * 18 17 15 22 22 C 1.38740 * 120.09284 * 359.97438 * 10 9 8 23 23 C 1.40018 * 109.59673 * 359.97438 * 7 6 5 24 24 H 0.96699 * 113.99918 * 59.99618 * 1 2 3 25 25 H 1.09009 * 109.47084 * 119.99860 * 2 1 3 26 26 H 1.48506 * 110.00002 * 59.99722 * 3 2 1 27 27 H 1.48500 * 110.00076 * 181.31684 * 3 2 1 28 28 H 1.08000 * 124.25379 * 359.74663 * 5 4 2 29 29 H 1.07997 * 119.66226 * 359.97438 * 8 7 6 30 30 H 1.07995 * 119.90826 * 179.97438 * 9 8 7 31 31 H 1.08998 * 109.46907 * 300.00002 * 14 13 11 32 32 H 1.08994 * 109.47445 * 60.00300 * 14 13 11 33 33 H 1.09000 * 113.61117 * 254.53392 * 17 15 14 34 34 H 1.08996 * 113.61302 * 25.43051 * 17 15 14 35 35 H 0.96696 * 113.99832 * 277.50077 * 20 18 17 36 36 H 1.09003 * 113.61396 * 270.88965 * 21 18 17 37 37 H 1.08996 * 113.69368 * 139.99222 * 21 18 17 38 38 H 1.08002 * 119.96076 * 179.97438 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 2.4391 -0.0679 -2.2623 6 16 2.9372 -1.1755 -3.5262 7 6 2.4256 -2.5776 -2.5941 8 6 2.4779 -3.9425 -2.9055 9 6 2.0208 -4.8731 -2.0250 10 6 1.4890 -4.4742 -0.7900 11 6 0.9943 -5.4876 0.1607 12 8 0.5330 -5.1431 1.2306 13 8 1.0539 -6.7957 -0.1574 14 6 0.5494 -7.7369 0.8264 15 6 0.6998 -9.1627 0.2920 16 1 0.4011 -9.2571 -0.7521 17 6 2.0659 -9.7966 0.6036 18 6 1.3070 -11.1044 0.8837 19 1 1.1754 -11.7305 0.0013 20 8 1.8091 -11.8278 2.0091 21 6 0.0826 -10.2324 1.2084 22 6 1.4277 -3.1277 -0.4612 23 6 1.8996 -2.1586 -1.3660 24 1 -0.3933 0.4417 -0.7650 25 1 1.7923 -0.5139 0.8901 26 1 1.5615 2.4679 1.2085 27 1 3.5347 1.7702 -0.0321 28 1 2.5364 1.0060 -2.3217 29 1 2.8853 -4.2590 -3.8543 30 1 2.0667 -5.9220 -2.2780 31 1 1.1166 -7.6344 1.7515 32 1 -0.5030 -7.5305 1.0205 33 1 2.7284 -9.8525 -0.2602 34 1 2.5515 -9.3763 1.4842 35 1 2.5792 -12.3781 1.8111 36 1 0.0261 -9.9312 2.2545 37 1 -0.8566 -10.6392 0.8337 38 1 1.0175 -2.8229 0.4902 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_13444986_11354868.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:53:35 Heat of formation + Delta-G solvation = -90.432223 kcal Electronic energy + Delta-G solvation = -23640.075200 eV Core-core repulsion = 19927.571924 eV Total energy + Delta-G solvation = -3712.503276 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 321.080 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.71043 -40.74787 -40.14441 -38.33207 -37.43552 -36.05092 -35.94860 -32.44599 -31.17427 -29.59742 -27.77389 -26.83488 -25.45856 -24.29119 -23.37390 -22.22480 -21.02448 -20.53542 -19.65129 -18.67497 -18.49560 -17.86050 -17.58424 -17.41703 -16.66625 -16.57133 -16.44178 -16.15263 -15.70908 -15.32983 -15.16532 -14.94355 -14.68815 -14.36136 -14.24925 -13.90636 -13.63785 -13.57519 -13.53625 -12.87790 -12.79429 -12.51205 -12.43017 -12.25036 -12.14950 -12.05709 -11.77684 -11.69588 -11.49485 -11.26129 -10.83869 -10.81560 -10.54866 -9.79669 -8.90936 -5.16241 -0.59863 -0.36211 0.30219 0.75368 0.92535 1.15578 1.46685 1.53810 1.56785 1.89416 2.58219 3.11247 3.32752 3.34989 3.39270 3.45476 3.54311 3.58802 3.76293 3.83224 3.86115 3.96251 4.10894 4.13461 4.19331 4.25607 4.29114 4.40822 4.48411 4.55934 4.67968 4.69220 4.69953 4.83480 4.88103 5.00753 5.05014 5.08387 5.15689 5.27179 5.42353 5.52930 6.48666 6.64651 6.74432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.534 6.534 2 C -0.054 4.054 3 Si 0.689 3.311 4 C -0.106 4.106 5 C -0.191 4.191 6 S 0.125 5.875 7 C -0.115 4.115 8 C -0.094 4.094 9 C -0.050 4.050 10 C -0.126 4.126 11 C 0.512 3.488 12 O -0.502 6.502 13 O -0.350 6.350 14 C 0.080 3.920 15 C -0.111 4.111 16 H 0.107 0.893 17 C -0.164 4.164 18 C 0.076 3.924 19 H 0.085 0.915 20 O -0.560 6.560 21 C -0.120 4.120 22 C 0.002 3.998 23 C -0.075 4.075 24 H 0.380 0.620 25 H 0.116 0.884 26 H -0.249 1.249 27 H -0.253 1.253 28 H 0.178 0.822 29 H 0.138 0.862 30 H 0.147 0.853 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.380 0.620 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.364 0.255 -5.893 6.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.339 6.339 2 C -0.167 4.167 3 Si 0.589 3.411 4 C -0.118 4.118 5 C -0.325 4.325 6 S 0.392 5.608 7 C -0.231 4.231 8 C -0.116 4.116 9 C -0.072 4.072 10 C -0.129 4.129 11 C 0.356 3.644 12 O -0.391 6.391 13 O -0.267 6.267 14 C 0.007 3.993 15 C -0.129 4.129 16 H 0.126 0.874 17 C -0.202 4.202 18 C 0.017 3.983 19 H 0.103 0.897 20 O -0.365 6.365 21 C -0.158 4.158 22 C -0.018 4.018 23 C -0.083 4.083 24 H 0.227 0.773 25 H 0.134 0.866 26 H -0.174 1.174 27 H -0.177 1.177 28 H 0.195 0.805 29 H 0.156 0.844 30 H 0.165 0.835 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.110 0.890 35 H 0.228 0.772 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.975 1.214 -5.732 6.183 hybrid contribution -0.111 -1.071 1.283 1.675 sum 1.864 0.143 -4.449 4.826 Atomic orbital electron populations 1.86550 1.16581 1.81691 1.49078 1.24937 0.85548 1.09810 0.96421 0.95033 0.81137 0.76999 0.87921 1.20142 1.02062 0.91879 0.97750 1.24984 1.05899 1.03788 0.97793 1.84382 1.64759 0.93290 1.18341 1.23141 1.03314 0.98592 0.98026 1.20191 1.01522 0.89227 1.00693 1.21029 0.94084 1.00600 0.91477 1.18837 1.06968 0.91601 0.95539 1.20968 0.75741 0.82141 0.85539 1.90881 1.42287 1.81771 1.24135 1.86511 1.76201 1.16349 1.47618 1.23116 0.99953 0.85983 0.90287 1.22376 0.98190 0.91148 1.01188 0.87444 1.23797 0.96588 0.97185 1.02645 1.23282 0.95023 0.90762 0.89197 0.89679 1.86532 1.50750 1.63874 1.35382 1.23074 0.97422 0.94352 1.00933 1.21131 0.92227 0.89822 0.98574 1.18870 1.02911 0.92341 0.94219 0.77302 0.86628 1.17356 1.17719 0.80543 0.84418 0.83514 0.90656 0.90567 0.90678 0.89039 0.77195 0.88699 0.89994 0.83681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.17 12.88 -35.23 -0.45 -0.62 16 2 C -0.05 0.01 2.75 36.00 0.10 0.11 16 3 Si 0.69 -1.09 30.28 -169.99 -5.15 -6.23 16 4 C -0.11 -0.02 5.33 -103.62 -0.55 -0.57 16 5 C -0.19 0.26 9.52 28.85 0.27 0.53 16 6 S 0.13 -0.09 23.23 -107.50 -2.50 -2.59 16 7 C -0.11 -0.10 6.49 -38.22 -0.25 -0.35 16 8 C -0.09 0.02 9.99 -39.68 -0.40 -0.38 16 9 C -0.05 -0.01 9.54 -39.62 -0.38 -0.39 16 10 C -0.13 -0.29 5.86 -105.18 -0.62 -0.91 16 11 C 0.51 1.85 7.89 34.50 0.27 2.12 16 12 O -0.50 -3.19 16.10 -19.26 -0.31 -3.50 16 13 O -0.35 -0.70 9.45 -40.62 -0.38 -1.09 16 14 C 0.08 0.07 5.31 37.16 0.20 0.27 16 15 C -0.11 0.10 4.02 -89.80 -0.36 -0.26 16 16 H 0.11 -0.18 8.14 -51.92 -0.42 -0.61 16 17 C -0.16 0.15 7.46 -25.92 -0.19 -0.04 16 18 C 0.08 -0.06 5.21 -25.92 -0.14 -0.20 16 19 H 0.09 -0.19 8.14 -51.93 -0.42 -0.62 16 20 O -0.56 -0.37 13.67 -35.23 -0.48 -0.85 16 21 C -0.12 0.08 7.47 -25.91 -0.19 -0.11 16 22 C 0.00 0.01 9.41 -38.46 -0.36 -0.36 16 23 C -0.08 -0.13 6.01 -105.41 -0.63 -0.77 16 24 H 0.38 -1.43 8.70 45.56 0.40 -1.03 16 25 H 0.12 0.06 7.96 -51.92 -0.41 -0.35 16 26 H -0.25 -0.44 7.11 56.52 0.40 -0.04 16 27 H -0.25 -0.21 7.11 56.52 0.40 0.19 16 28 H 0.18 -0.75 5.72 -52.49 -0.30 -1.05 16 29 H 0.14 -0.34 8.06 -52.49 -0.42 -0.76 16 30 H 0.15 -0.23 7.59 -52.49 -0.40 -0.63 16 31 H 0.08 0.10 7.84 -51.93 -0.41 -0.31 16 32 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 33 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 34 H 0.09 0.01 7.89 -51.93 -0.41 -0.40 16 35 H 0.38 -1.29 9.12 45.56 0.42 -0.87 16 36 H 0.09 0.02 8.10 -51.93 -0.42 -0.40 16 37 H 0.08 -0.13 8.14 -51.93 -0.42 -0.55 16 38 H 0.15 0.45 7.60 -52.49 -0.40 0.05 16 LS Contribution 341.39 15.07 5.14 5.14 Total: 0.00 -8.28 341.39 -11.03 -19.31 By element: Atomic # 1 Polarization: -4.60 SS G_CDS: -3.67 Total: -8.27 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -3.23 Total: -1.30 kcal Atomic # 8 Polarization: -4.43 SS G_CDS: -1.63 Total: -6.06 kcal Atomic # 14 Polarization: -1.09 SS G_CDS: -5.15 Total: -6.23 kcal Atomic # 16 Polarization: -0.09 SS G_CDS: -2.50 Total: -2.59 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -8.28 -11.03 -19.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13444986_11354868.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.123 kcal (2) G-P(sol) polarization free energy of solvation -8.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds