Wall clock time and date at job start Sat Mar 6 2021 05:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86298 * 109.47456 * 2 1 4 4 C 1.50697 * 109.47087 * 239.99740 * 2 1 3 5 5 C 1.31734 * 122.55339 * 105.03015 * 4 2 1 6 6 S 1.75274 * 111.48012 * 179.72841 * 5 4 2 7 7 C 1.75966 * 92.23051 * 359.97438 * 6 5 4 8 8 C 1.40095 * 130.37045 * 180.02562 * 7 6 5 9 9 C 1.36023 * 120.67338 * 179.97438 * 8 7 6 10 10 C 1.40259 * 120.18541 * 0.02562 * 9 8 7 11 11 C 1.47497 * 119.95285 * 179.97438 * 10 9 8 12 12 O 1.21496 * 120.00225 * 180.02562 * 11 10 9 13 13 O 1.34747 * 120.00026 * 0.02710 * 11 10 9 14 14 C 1.45198 * 117.00086 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47105 * 180.02562 * 14 13 11 16 16 H 1.09007 * 112.84911 * 316.19656 * 15 14 13 17 17 C 1.53787 * 113.61650 * 87.50146 * 15 14 13 18 18 C 1.53778 * 87.08125 * 139.98248 * 17 15 14 19 19 H 1.08993 * 113.61661 * 89.11628 * 18 17 15 20 20 O 1.42900 * 113.61478 * 220.02085 * 18 17 15 21 21 C 1.53784 * 87.08399 * 334.56772 * 18 17 15 22 22 C 1.38740 * 120.09284 * 359.97438 * 10 9 8 23 23 C 1.40018 * 109.59673 * 359.97438 * 7 6 5 24 24 H 0.96699 * 113.99918 * 59.99618 * 1 2 3 25 25 H 1.09009 * 109.47084 * 119.99860 * 2 1 3 26 26 H 1.48506 * 110.00002 * 59.99722 * 3 2 1 27 27 H 1.48500 * 110.00076 * 181.31684 * 3 2 1 28 28 H 1.08000 * 124.25379 * 359.74663 * 5 4 2 29 29 H 1.07997 * 119.66226 * 359.97438 * 8 7 6 30 30 H 1.07995 * 119.90826 * 179.97438 * 9 8 7 31 31 H 1.08998 * 109.46907 * 300.00002 * 14 13 11 32 32 H 1.08994 * 109.47445 * 60.00300 * 14 13 11 33 33 H 1.09000 * 113.61117 * 254.53392 * 17 15 14 34 34 H 1.08996 * 113.61302 * 25.43051 * 17 15 14 35 35 H 0.96696 * 113.99832 * 277.50077 * 20 18 17 36 36 H 1.09003 * 113.61396 * 270.88965 * 21 18 17 37 37 H 1.08996 * 113.69368 * 139.99222 * 21 18 17 38 38 H 1.08002 * 119.96076 * 179.97438 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 2.4391 -0.0679 -2.2623 6 16 2.9372 -1.1755 -3.5262 7 6 2.4256 -2.5776 -2.5941 8 6 2.4779 -3.9425 -2.9055 9 6 2.0208 -4.8731 -2.0250 10 6 1.4890 -4.4742 -0.7900 11 6 0.9943 -5.4876 0.1607 12 8 0.5330 -5.1431 1.2306 13 8 1.0539 -6.7957 -0.1574 14 6 0.5494 -7.7369 0.8264 15 6 0.6998 -9.1627 0.2920 16 1 0.4011 -9.2571 -0.7521 17 6 2.0659 -9.7966 0.6036 18 6 1.3070 -11.1044 0.8837 19 1 1.1754 -11.7305 0.0013 20 8 1.8091 -11.8278 2.0091 21 6 0.0826 -10.2324 1.2084 22 6 1.4277 -3.1277 -0.4612 23 6 1.8996 -2.1586 -1.3660 24 1 -0.3933 0.4417 -0.7650 25 1 1.7923 -0.5139 0.8901 26 1 1.5615 2.4679 1.2085 27 1 3.5347 1.7702 -0.0321 28 1 2.5364 1.0060 -2.3217 29 1 2.8853 -4.2590 -3.8543 30 1 2.0667 -5.9220 -2.2780 31 1 1.1166 -7.6344 1.7515 32 1 -0.5030 -7.5305 1.0205 33 1 2.7284 -9.8525 -0.2602 34 1 2.5515 -9.3763 1.4842 35 1 2.5792 -12.3781 1.8111 36 1 0.0261 -9.9312 2.2545 37 1 -0.8566 -10.6392 0.8337 38 1 1.0175 -2.8229 0.4902 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13444986_11354868.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:53:34 Heat of formation + Delta-G solvation = -89.133420 kcal Electronic energy + Delta-G solvation = -23640.018880 eV Core-core repulsion = 19927.571924 eV Total energy + Delta-G solvation = -3712.446956 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 321.080 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.90030 -40.76485 -40.16848 -38.33417 -37.67247 -36.07103 -35.94356 -32.52052 -31.20272 -29.65614 -27.75860 -26.77425 -25.55571 -24.30408 -23.37629 -22.34400 -21.05752 -20.50342 -19.66640 -18.72105 -18.59096 -17.91851 -17.66402 -17.62625 -16.67015 -16.56434 -16.39113 -16.14870 -15.73053 -15.35271 -15.24315 -14.95380 -14.71300 -14.44518 -14.27709 -13.99233 -13.72430 -13.55747 -13.50263 -12.88069 -12.80670 -12.52258 -12.43967 -12.28851 -12.21359 -12.12670 -11.86583 -11.72623 -11.65345 -11.24325 -10.88082 -10.76152 -10.52196 -9.81051 -8.86984 -5.08165 -0.68582 -0.40517 0.34547 0.78788 0.93225 1.21395 1.28177 1.37436 1.62068 1.93808 2.49024 3.16763 3.35826 3.41199 3.42183 3.46846 3.55795 3.62179 3.80134 3.84956 3.92290 3.97237 4.10635 4.13606 4.17220 4.25375 4.28769 4.34506 4.52822 4.58361 4.67674 4.72631 4.77122 4.84084 4.94482 5.00527 5.05609 5.09064 5.12779 5.20147 5.36992 5.51299 6.49027 6.72217 6.87117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.554 6.554 2 C -0.067 4.067 3 Si 0.796 3.204 4 C -0.124 4.124 5 C -0.181 4.181 6 S 0.154 5.846 7 C -0.130 4.130 8 C -0.090 4.090 9 C -0.049 4.049 10 C -0.139 4.139 11 C 0.512 3.488 12 O -0.540 6.540 13 O -0.342 6.342 14 C 0.076 3.924 15 C -0.101 4.101 16 H 0.123 0.877 17 C -0.163 4.163 18 C 0.076 3.924 19 H 0.106 0.894 20 O -0.584 6.584 21 C -0.126 4.126 22 C -0.015 4.015 23 C -0.091 4.091 24 H 0.396 0.604 25 H 0.098 0.902 26 H -0.298 1.298 27 H -0.279 1.279 28 H 0.208 0.792 29 H 0.166 0.834 30 H 0.167 0.833 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.396 0.604 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.056 0.341 -8.360 8.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.178 4.178 3 Si 0.700 3.300 4 C -0.136 4.136 5 C -0.314 4.314 6 S 0.421 5.579 7 C -0.246 4.246 8 C -0.112 4.112 9 C -0.070 4.070 10 C -0.142 4.142 11 C 0.359 3.641 12 O -0.432 6.432 13 O -0.259 6.259 14 C 0.002 3.998 15 C -0.119 4.119 16 H 0.141 0.859 17 C -0.201 4.201 18 C 0.018 3.982 19 H 0.124 0.876 20 O -0.392 6.392 21 C -0.163 4.163 22 C -0.034 4.034 23 C -0.099 4.099 24 H 0.247 0.753 25 H 0.115 0.885 26 H -0.226 1.226 27 H -0.206 1.206 28 H 0.224 0.776 29 H 0.183 0.817 30 H 0.184 0.816 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.246 0.754 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.666 1.263 -8.242 8.754 hybrid contribution -0.313 -1.094 2.067 2.360 sum 2.352 0.169 -6.176 6.610 Atomic orbital electron populations 1.86508 1.17051 1.82282 1.50389 1.25182 0.85455 1.11273 0.95867 0.93902 0.77646 0.73229 0.85266 1.20151 1.03562 0.91359 0.98521 1.25358 1.03974 1.05267 0.96840 1.84293 1.63912 0.92131 1.17563 1.23460 1.03213 0.99847 0.98062 1.20535 1.00491 0.88697 1.01440 1.21222 0.93538 1.01790 0.90495 1.18893 1.07967 0.91050 0.96324 1.21310 0.74864 0.82740 0.85218 1.90855 1.44220 1.82314 1.25766 1.86511 1.75885 1.15807 1.47653 1.23245 0.99551 0.86890 0.90065 1.22365 0.98317 0.89478 1.01784 0.85909 1.23759 0.96650 0.97179 1.02479 1.23400 0.94508 0.90866 0.89444 0.87637 1.86488 1.51791 1.64413 1.36513 1.23111 0.98324 0.94674 1.00218 1.21073 0.93382 0.90564 0.98430 1.19082 1.03171 0.93086 0.94551 0.75345 0.88476 1.22574 1.20571 0.77573 0.81680 0.81573 0.91696 0.90898 0.89517 0.90507 0.75403 0.90167 0.88908 0.85567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.07 12.88 -148.98 -1.92 -2.99 16 2 C -0.07 -0.05 2.75 71.24 0.20 0.14 16 3 Si 0.80 -2.54 30.28 68.60 2.08 -0.47 16 4 C -0.12 -0.09 5.33 -18.71 -0.10 -0.19 16 5 C -0.18 0.72 9.52 67.10 0.64 1.35 16 6 S 0.15 -0.47 23.23 -56.49 -1.31 -1.78 16 7 C -0.13 -0.17 6.49 23.15 0.15 -0.02 16 8 C -0.09 0.12 9.99 22.21 0.22 0.34 16 9 C -0.05 -0.02 9.54 22.25 0.21 0.19 16 10 C -0.14 -0.87 5.86 -20.23 -0.12 -0.99 16 11 C 0.51 4.85 7.89 70.26 0.55 5.40 16 12 O -0.54 -8.64 16.10 19.85 0.32 -8.32 16 13 O -0.34 -1.77 9.45 -56.57 -0.53 -2.31 16 14 C 0.08 0.25 5.31 71.98 0.38 0.63 16 15 C -0.10 0.17 4.02 -10.26 -0.04 0.13 16 16 H 0.12 -0.55 8.14 -2.38 -0.02 -0.57 16 17 C -0.16 0.28 7.46 31.12 0.23 0.52 16 18 C 0.08 -0.15 5.21 31.12 0.16 0.01 16 19 H 0.11 -0.64 8.14 -2.39 -0.02 -0.66 16 20 O -0.58 -0.86 13.67 -148.98 -2.04 -2.90 16 21 C -0.13 0.12 7.47 31.12 0.23 0.36 16 22 C -0.01 -0.11 9.41 23.00 0.22 0.10 16 23 C -0.09 -0.41 6.01 -20.37 -0.12 -0.53 16 24 H 0.40 -2.84 8.70 -74.06 -0.64 -3.49 16 25 H 0.10 0.37 7.96 -2.38 -0.02 0.35 16 26 H -0.30 -1.45 7.11 99.48 0.71 -0.74 16 27 H -0.28 -0.34 7.11 99.48 0.71 0.37 16 28 H 0.21 -2.26 5.72 -2.91 -0.02 -2.27 16 29 H 0.17 -1.19 8.06 -2.91 -0.02 -1.21 16 30 H 0.17 -0.70 7.59 -2.91 -0.02 -0.72 16 31 H 0.06 0.34 7.84 -2.39 -0.02 0.32 16 32 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 34 H 0.08 0.10 7.89 -2.39 -0.02 0.08 16 35 H 0.40 -2.71 9.12 -74.06 -0.68 -3.38 16 36 H 0.08 0.16 8.10 -2.39 -0.02 0.14 16 37 H 0.09 -0.31 8.14 -2.39 -0.02 -0.33 16 38 H 0.13 1.32 7.60 -2.91 -0.02 1.30 16 Total: 0.00 -21.46 341.39 -0.75 -22.22 By element: Atomic # 1 Polarization: -10.75 SS G_CDS: -0.16 Total: -10.91 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: 2.82 Total: 7.45 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -4.17 Total: -16.51 kcal Atomic # 14 Polarization: -2.54 SS G_CDS: 2.08 Total: -0.47 kcal Atomic # 16 Polarization: -0.47 SS G_CDS: -1.31 Total: -1.78 kcal Total: -21.46 -0.75 -22.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13444986_11354868.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.918 kcal (2) G-P(sol) polarization free energy of solvation -21.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds