Wall clock time and date at job start Sat Mar 6 2021 06:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86293 * 109.47278 * 2 1 4 4 C 1.86299 * 109.46949 * 239.99949 * 2 1 3 5 5 C 1.86300 * 109.47010 * 120.00073 * 2 1 3 6 6 O 1.45199 * 109.46971 * 59.99915 * 5 2 1 7 7 C 1.34742 * 117.00291 * 75.00429 * 6 5 2 8 8 O 1.21506 * 119.99886 * 359.97438 * 7 6 5 9 9 C 1.47498 * 120.00287 * 180.02562 * 7 6 5 10 10 C 1.40255 * 119.95081 * 359.97438 * 9 7 6 11 11 C 1.36027 * 120.18583 * 179.97438 * 10 9 7 12 12 C 1.40087 * 120.67317 * 0.02562 * 11 10 9 13 13 S 1.75965 * 130.37308 * 180.32622 * 12 11 10 14 14 C 1.75273 * 92.23469 * 180.02562 * 13 12 11 15 15 C 1.31741 * 111.47484 * 359.64002 * 14 13 12 16 16 C 1.50696 * 122.55256 * 180.24613 * 15 14 13 17 17 O 1.42900 * 109.46957 * 105.02675 * 16 15 14 18 18 Si 1.86302 * 109.47128 * 345.02800 * 16 15 14 19 19 H 1.48501 * 109.47182 * 60.00329 * 18 16 15 20 20 H 1.48502 * 109.47338 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47517 * 299.99947 * 18 16 15 22 22 C 1.40016 * 120.03562 * 0.02562 * 12 11 10 23 23 C 1.38744 * 119.95542 * 179.97438 * 9 7 6 24 24 H 1.09003 * 109.46909 * 299.99914 * 1 2 3 25 25 H 1.09005 * 109.47099 * 59.99494 * 1 2 3 26 26 H 1.09000 * 109.47618 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47431 * 179.97438 * 3 2 1 28 28 H 1.09005 * 109.47468 * 300.00280 * 3 2 1 29 29 H 1.09003 * 109.47080 * 60.00191 * 3 2 1 30 30 H 1.09007 * 109.47287 * 300.00286 * 4 2 1 31 31 H 1.09004 * 109.47264 * 60.00181 * 4 2 1 32 32 H 1.09005 * 109.47151 * 180.02562 * 4 2 1 33 33 H 1.09003 * 109.47296 * 299.99776 * 5 2 1 34 34 H 1.09005 * 109.47101 * 179.97438 * 5 2 1 35 35 H 1.07994 * 119.90681 * 0.02562 * 10 9 7 36 36 H 1.08004 * 119.66569 * 180.02562 * 11 10 9 37 37 H 1.08002 * 124.26613 * 179.91561 * 14 13 12 38 38 H 1.09000 * 109.47488 * 225.02803 * 16 15 14 39 39 H 0.96699 * 114.00345 * 299.99521 * 17 16 15 40 40 H 1.07999 * 119.96042 * 0.02562 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8782 -1.5211 5 6 2.4840 -0.8783 1.5211 6 8 1.9999 -2.2472 1.5211 7 6 2.5964 -3.1070 0.6722 8 8 3.4961 -2.7232 -0.0486 9 6 2.1564 -4.5137 0.6172 10 6 1.1174 -4.9555 1.4493 11 6 0.7075 -6.2517 1.4021 12 6 1.3139 -7.1616 0.5264 13 16 0.9884 -8.8689 0.2515 14 6 2.2469 -8.9837 -0.9630 15 6 2.8494 -7.8262 -1.1441 16 6 3.9682 -7.6409 -2.1366 17 8 3.4786 -6.9383 -3.2805 18 14 4.6151 -9.3074 -2.6613 19 1 3.5196 -10.0880 -3.2905 20 1 5.7172 -9.1249 -3.6398 21 1 5.1239 -10.0376 -1.4727 22 6 2.3536 -6.7409 -0.3118 23 6 2.7709 -5.3981 -0.2576 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.5740 1.7564 0.0005 28 1 2.1207 2.2703 -0.8900 29 1 2.1207 2.2702 0.8900 30 1 2.1205 -1.9060 -1.5212 31 1 2.1206 -0.3644 -2.4112 32 1 3.5740 -0.8787 -1.5209 33 1 2.1206 -0.3644 2.4112 34 1 3.5740 -0.8787 1.5209 35 1 0.6409 -4.2645 2.1288 36 1 -0.0936 -6.5828 2.0464 37 1 2.4942 -9.8882 -1.4989 38 1 4.7723 -7.0680 -1.6749 39 1 2.7597 -7.3910 -3.7423 40 1 3.5711 -5.0557 -0.8971 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_13444986_4858416.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 06:09:14 Heat of formation + Delta-G solvation = -103.486273 kcal Electronic energy + Delta-G solvation = -22884.269222 eV Core-core repulsion = 19493.439110 eV Total energy + Delta-G solvation = -3390.830113 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.081 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.63573 -40.51799 -38.33416 -37.26396 -35.99143 -32.40975 -31.12990 -29.67894 -28.47602 -28.32415 -28.27658 -27.53792 -24.98958 -24.17668 -22.16174 -20.85133 -19.69085 -18.43942 -17.90750 -17.84800 -17.31335 -16.64875 -16.59854 -16.15057 -15.70869 -15.15153 -14.93372 -14.87181 -14.71929 -14.38408 -14.09899 -14.03590 -13.83680 -13.77342 -13.60261 -13.39045 -13.23680 -13.02991 -13.00168 -12.80292 -12.62067 -12.34474 -12.24194 -12.15452 -11.96458 -11.72804 -11.43956 -10.89225 -10.80130 -10.73290 -10.53468 -10.36762 -9.76534 -8.88643 -0.56253 -0.33092 0.32300 0.77404 0.94359 1.01656 1.31168 1.40262 1.44150 1.52479 1.61254 1.82096 1.86715 2.03705 2.55285 2.63482 3.34759 3.39633 3.59297 3.70505 3.87449 3.99588 4.13852 4.22322 4.28675 4.35419 4.50997 4.64855 4.68182 4.69777 4.70563 4.75486 4.78050 4.86813 4.94185 4.99869 5.05464 5.11819 5.18763 5.41859 5.45627 5.52749 5.56716 5.78968 6.45810 6.82787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.446 4.446 2 Si 0.998 3.002 3 C -0.446 4.446 4 C -0.437 4.437 5 C -0.238 4.238 6 O -0.332 6.332 7 C 0.495 3.505 8 O -0.487 6.487 9 C -0.125 4.125 10 C -0.053 4.053 11 C -0.094 4.094 12 C -0.115 4.115 13 S 0.123 5.877 14 C -0.203 4.203 15 C -0.103 4.103 16 C -0.067 4.067 17 O -0.532 6.532 18 Si 0.948 3.052 19 H -0.250 1.250 20 H -0.246 1.246 21 H -0.246 1.246 22 C -0.074 4.074 23 C 0.002 3.998 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.110 0.890 34 H 0.081 0.919 35 H 0.147 0.853 36 H 0.137 0.863 37 H 0.172 0.828 38 H 0.121 0.879 39 H 0.377 0.623 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.044 -1.323 1.117 2.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.554 4.554 2 Si 1.194 2.806 3 C -0.554 4.554 4 C -0.545 4.545 5 C -0.356 4.356 6 O -0.248 6.248 7 C 0.339 3.661 8 O -0.376 6.376 9 C -0.128 4.128 10 C -0.074 4.074 11 C -0.116 4.116 12 C -0.231 4.231 13 S 0.390 5.610 14 C -0.337 4.337 15 C -0.116 4.116 16 C -0.180 4.180 17 O -0.337 6.337 18 Si 0.769 3.231 19 H -0.173 1.173 20 H -0.169 1.169 21 H -0.169 1.169 22 C -0.081 4.081 23 C -0.017 4.017 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.129 0.871 34 H 0.100 0.900 35 H 0.165 0.835 36 H 0.155 0.845 37 H 0.189 0.811 38 H 0.139 0.861 39 H 0.224 0.776 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.004 -2.726 1.458 3.684 hybrid contribution 0.470 1.036 -0.411 1.210 sum -1.535 -1.690 1.047 2.511 Atomic orbital electron populations 1.26060 1.20045 1.04703 1.04562 0.79718 0.67703 0.67099 0.66082 1.26042 1.06511 1.18069 1.04823 1.26247 1.07061 1.07326 1.13826 1.28368 1.05359 0.83754 1.18144 1.86456 1.58977 1.21245 1.58102 1.21001 0.80548 0.86601 0.77921 1.90863 1.28583 1.77969 1.40142 1.18852 1.01164 0.90647 1.02153 1.21056 0.94190 0.95523 0.96628 1.20186 1.00685 0.92157 0.98617 1.23123 1.00231 0.98695 1.01036 1.84362 1.36073 1.02485 1.38047 1.25063 1.02185 1.01822 1.04632 1.20117 1.00115 0.91740 0.99609 1.24856 0.96730 1.09820 0.86625 1.86562 1.56502 1.50049 1.40557 0.85721 0.81173 0.74507 0.81717 1.17348 1.16948 1.16946 1.18843 0.97507 0.93968 0.97832 1.21145 0.96701 0.89853 0.94028 0.91089 0.90976 0.91052 0.90956 0.90649 0.91070 0.91503 0.91905 0.90393 0.87145 0.90027 0.83492 0.84481 0.81074 0.86136 0.77607 0.83403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.30 8.65 101.05 0.87 1.17 16 2 Si 1.00 -1.10 12.12 -169.99 -2.06 -3.16 16 3 C -0.45 0.50 8.65 101.05 0.87 1.37 16 4 C -0.44 -0.68 7.10 101.05 0.72 0.03 16 5 C -0.24 0.04 5.40 101.05 0.55 0.58 16 6 O -0.33 -0.52 9.15 -40.60 -0.37 -0.90 16 7 C 0.49 1.37 6.67 34.50 0.23 1.60 16 8 O -0.49 -2.13 12.01 -19.27 -0.23 -2.36 16 9 C -0.12 -0.24 5.86 -105.18 -0.62 -0.86 16 10 C -0.05 -0.01 9.54 -39.62 -0.38 -0.39 16 11 C -0.09 0.00 9.99 -39.68 -0.40 -0.39 16 12 C -0.11 -0.12 6.49 -38.22 -0.25 -0.37 16 13 S 0.12 -0.02 23.23 -107.50 -2.50 -2.52 16 14 C -0.20 0.09 9.52 28.85 0.27 0.37 16 15 C -0.10 -0.04 5.33 -103.63 -0.55 -0.59 16 16 C -0.07 0.04 2.75 36.00 0.10 0.14 16 17 O -0.53 -0.10 12.88 -35.23 -0.45 -0.55 16 18 Si 0.95 -1.19 25.72 -169.99 -4.37 -5.57 16 19 H -0.25 0.41 6.88 56.52 0.39 0.79 16 20 H -0.25 -0.07 7.11 56.52 0.40 0.34 16 21 H -0.25 0.14 7.11 56.52 0.40 0.54 16 22 C -0.07 -0.12 6.01 -105.41 -0.63 -0.75 16 23 C 0.00 0.01 9.41 -38.45 -0.36 -0.36 16 24 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 25 H 0.07 -0.05 7.96 -51.93 -0.41 -0.47 16 26 H 0.07 -0.01 7.96 -51.93 -0.41 -0.42 16 27 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 28 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 29 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 30 H 0.07 0.19 6.28 -51.92 -0.33 -0.13 16 31 H 0.06 0.06 7.96 -51.93 -0.41 -0.35 16 32 H 0.08 0.20 7.42 -51.93 -0.39 -0.18 16 33 H 0.11 -0.24 7.96 -51.93 -0.41 -0.65 16 34 H 0.08 0.03 7.52 -51.93 -0.39 -0.37 16 35 H 0.15 -0.22 7.59 -52.49 -0.40 -0.62 16 36 H 0.14 -0.30 8.06 -52.48 -0.42 -0.72 16 37 H 0.17 -0.40 5.57 -52.49 -0.29 -0.69 16 38 H 0.12 -0.13 7.96 -51.93 -0.41 -0.54 16 39 H 0.38 -1.18 8.70 45.56 0.40 -0.78 16 40 H 0.15 0.32 7.60 -52.49 -0.40 -0.08 16 LS Contribution 347.99 15.07 5.24 5.24 Total: 0.00 -5.53 347.99 -9.06 -14.60 By element: Atomic # 1 Polarization: -1.59 SS G_CDS: -4.75 Total: -6.34 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: 0.43 Total: 1.55 kcal Atomic # 8 Polarization: -2.75 SS G_CDS: -1.06 Total: -3.81 kcal Atomic # 14 Polarization: -2.30 SS G_CDS: -6.43 Total: -8.73 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -2.50 Total: -2.52 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -5.53 -9.06 -14.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13444986_4858416.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.890 kcal (2) G-P(sol) polarization free energy of solvation -5.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds