Wall clock time and date at job start Sat Mar 6 2021 06:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86293 * 109.47278 * 2 1 4 4 C 1.86299 * 109.46949 * 239.99949 * 2 1 3 5 5 C 1.86300 * 109.47010 * 120.00073 * 2 1 3 6 6 O 1.45199 * 109.46971 * 59.99915 * 5 2 1 7 7 C 1.34742 * 117.00291 * 75.00429 * 6 5 2 8 8 O 1.21506 * 119.99886 * 359.97438 * 7 6 5 9 9 C 1.47498 * 120.00287 * 180.02562 * 7 6 5 10 10 C 1.40255 * 119.95081 * 359.97438 * 9 7 6 11 11 C 1.36027 * 120.18583 * 179.97438 * 10 9 7 12 12 C 1.40087 * 120.67317 * 0.02562 * 11 10 9 13 13 S 1.75965 * 130.37308 * 180.32622 * 12 11 10 14 14 C 1.75273 * 92.23469 * 180.02562 * 13 12 11 15 15 C 1.31741 * 111.47484 * 359.64002 * 14 13 12 16 16 C 1.50696 * 122.55256 * 180.24613 * 15 14 13 17 17 O 1.42900 * 109.46957 * 105.02675 * 16 15 14 18 18 Si 1.86302 * 109.47128 * 345.02800 * 16 15 14 19 19 H 1.48501 * 109.47182 * 60.00329 * 18 16 15 20 20 H 1.48502 * 109.47338 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47517 * 299.99947 * 18 16 15 22 22 C 1.40016 * 120.03562 * 0.02562 * 12 11 10 23 23 C 1.38744 * 119.95542 * 179.97438 * 9 7 6 24 24 H 1.09003 * 109.46909 * 299.99914 * 1 2 3 25 25 H 1.09005 * 109.47099 * 59.99494 * 1 2 3 26 26 H 1.09000 * 109.47618 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47431 * 179.97438 * 3 2 1 28 28 H 1.09005 * 109.47468 * 300.00280 * 3 2 1 29 29 H 1.09003 * 109.47080 * 60.00191 * 3 2 1 30 30 H 1.09007 * 109.47287 * 300.00286 * 4 2 1 31 31 H 1.09004 * 109.47264 * 60.00181 * 4 2 1 32 32 H 1.09005 * 109.47151 * 180.02562 * 4 2 1 33 33 H 1.09003 * 109.47296 * 299.99776 * 5 2 1 34 34 H 1.09005 * 109.47101 * 179.97438 * 5 2 1 35 35 H 1.07994 * 119.90681 * 0.02562 * 10 9 7 36 36 H 1.08004 * 119.66569 * 180.02562 * 11 10 9 37 37 H 1.08002 * 124.26613 * 179.91561 * 14 13 12 38 38 H 1.09000 * 109.47488 * 225.02803 * 16 15 14 39 39 H 0.96699 * 114.00345 * 299.99521 * 17 16 15 40 40 H 1.07999 * 119.96042 * 0.02562 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8782 -1.5211 5 6 2.4840 -0.8783 1.5211 6 8 1.9999 -2.2472 1.5211 7 6 2.5964 -3.1070 0.6722 8 8 3.4961 -2.7232 -0.0486 9 6 2.1564 -4.5137 0.6172 10 6 1.1174 -4.9555 1.4493 11 6 0.7075 -6.2517 1.4021 12 6 1.3139 -7.1616 0.5264 13 16 0.9884 -8.8689 0.2515 14 6 2.2469 -8.9837 -0.9630 15 6 2.8494 -7.8262 -1.1441 16 6 3.9682 -7.6409 -2.1366 17 8 3.4786 -6.9383 -3.2805 18 14 4.6151 -9.3074 -2.6613 19 1 3.5196 -10.0880 -3.2905 20 1 5.7172 -9.1249 -3.6398 21 1 5.1239 -10.0376 -1.4727 22 6 2.3536 -6.7409 -0.3118 23 6 2.7709 -5.3981 -0.2576 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.5740 1.7564 0.0005 28 1 2.1207 2.2703 -0.8900 29 1 2.1207 2.2702 0.8900 30 1 2.1205 -1.9060 -1.5212 31 1 2.1206 -0.3644 -2.4112 32 1 3.5740 -0.8787 -1.5209 33 1 2.1206 -0.3644 2.4112 34 1 3.5740 -0.8787 1.5209 35 1 0.6409 -4.2645 2.1288 36 1 -0.0936 -6.5828 2.0464 37 1 2.4942 -9.8882 -1.4989 38 1 4.7723 -7.0680 -1.6749 39 1 2.7597 -7.3910 -3.7423 40 1 3.5711 -5.0557 -0.8971 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13444986_4858416.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 06:09:13 Heat of formation + Delta-G solvation = -94.825092 kcal Electronic energy + Delta-G solvation = -22883.893645 eV Core-core repulsion = 19493.439110 eV Total energy + Delta-G solvation = -3390.454536 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.081 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.76145 -40.57330 -38.32902 -37.43156 -35.99964 -32.46880 -31.15656 -29.65933 -28.45270 -28.35890 -28.27651 -27.51234 -25.05151 -24.20051 -22.23397 -20.89619 -19.70484 -18.52882 -17.98186 -17.88446 -17.45773 -16.65191 -16.58741 -16.14023 -15.69920 -15.16398 -14.91971 -14.89094 -14.75158 -14.43847 -14.06732 -14.02355 -13.88013 -13.77481 -13.57677 -13.39694 -13.24463 -13.06565 -13.00896 -12.80274 -12.65050 -12.38642 -12.23537 -12.12395 -11.95525 -11.72755 -11.59906 -10.85733 -10.84707 -10.77022 -10.49210 -10.39109 -9.79523 -8.87832 -0.62933 -0.38490 0.33329 0.77431 0.93949 1.08674 1.33453 1.40593 1.48525 1.51082 1.60299 1.88414 1.88890 2.06393 2.53874 2.57966 3.39910 3.43669 3.61247 3.67364 3.86956 3.99865 4.11490 4.26095 4.28086 4.39260 4.53136 4.67173 4.70453 4.74275 4.77917 4.81167 4.82330 4.83203 4.85972 4.87910 5.02799 5.09517 5.15099 5.29956 5.52901 5.54608 5.61031 5.63518 6.64752 6.66463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.452 4.452 2 Si 1.058 2.942 3 C -0.450 4.450 4 C -0.458 4.458 5 C -0.256 4.256 6 O -0.331 6.331 7 C 0.493 3.507 8 O -0.512 6.512 9 C -0.137 4.137 10 C -0.052 4.052 11 C -0.092 4.092 12 C -0.129 4.129 13 S 0.142 5.858 14 C -0.201 4.201 15 C -0.114 4.114 16 C -0.073 4.073 17 O -0.550 6.550 18 Si 0.987 3.013 19 H -0.236 1.236 20 H -0.271 1.271 21 H -0.254 1.254 22 C -0.088 4.088 23 C -0.011 4.011 24 H 0.082 0.918 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.136 0.864 34 H 0.074 0.926 35 H 0.166 0.834 36 H 0.162 0.838 37 H 0.191 0.809 38 H 0.116 0.884 39 H 0.390 0.610 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.338 -1.589 2.052 4.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.560 4.560 2 Si 1.250 2.750 3 C -0.559 4.559 4 C -0.563 4.563 5 C -0.373 4.373 6 O -0.246 6.246 7 C 0.339 3.661 8 O -0.403 6.403 9 C -0.141 4.141 10 C -0.074 4.074 11 C -0.114 4.114 12 C -0.245 4.245 13 S 0.409 5.591 14 C -0.335 4.335 15 C -0.127 4.127 16 C -0.185 4.185 17 O -0.357 6.357 18 Si 0.808 3.192 19 H -0.159 1.159 20 H -0.196 1.196 21 H -0.177 1.177 22 C -0.096 4.096 23 C -0.031 4.031 24 H 0.101 0.899 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.154 0.846 34 H 0.093 0.907 35 H 0.183 0.817 36 H 0.180 0.820 37 H 0.208 0.792 38 H 0.134 0.866 39 H 0.239 0.761 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.315 -3.015 2.378 5.073 hybrid contribution 0.882 1.114 -0.720 1.593 sum -2.433 -1.901 1.658 3.505 Atomic orbital electron populations 1.26125 1.20147 1.04520 1.05237 0.78826 0.66865 0.66132 0.63207 1.26069 1.06438 1.17866 1.05524 1.26581 1.06095 1.06982 1.16620 1.28710 1.05244 0.83118 1.20239 1.86444 1.58751 1.21907 1.57513 1.21224 0.80197 0.87096 0.77602 1.90849 1.29793 1.78469 1.41177 1.18963 1.02026 0.90243 1.02856 1.21258 0.93579 0.96125 0.96410 1.20503 1.00808 0.91766 0.98317 1.23402 1.00202 0.99757 1.01153 1.84263 1.35798 1.01247 1.37794 1.25323 1.01649 1.02150 1.04356 1.20191 1.00721 0.91773 0.99986 1.25012 0.96482 1.10592 0.86371 1.86526 1.57225 1.51029 1.40935 0.85177 0.80278 0.73342 0.80416 1.15949 1.19552 1.17723 1.19036 0.98051 0.93999 0.98502 1.21116 0.96956 0.90539 0.94477 0.89916 0.90800 0.91681 0.91186 0.90492 0.89822 0.93296 0.91724 0.92052 0.84597 0.90698 0.81672 0.82021 0.79181 0.86609 0.76118 0.84665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.84 8.65 113.37 0.98 1.82 16 2 Si 1.06 -2.05 12.12 68.60 0.83 -1.22 16 3 C -0.45 1.27 8.65 113.37 0.98 2.25 16 4 C -0.46 -2.46 7.10 113.37 0.80 -1.66 16 5 C -0.26 0.05 5.40 113.37 0.61 0.66 16 6 O -0.33 -1.24 9.15 -56.52 -0.52 -1.76 16 7 C 0.49 3.65 6.67 70.26 0.47 4.11 16 8 O -0.51 -5.92 12.01 19.82 0.24 -5.68 16 9 C -0.14 -0.76 5.86 -20.22 -0.12 -0.88 16 10 C -0.05 -0.04 9.54 22.25 0.21 0.17 16 11 C -0.09 0.04 9.99 22.20 0.22 0.26 16 12 C -0.13 -0.29 6.49 23.15 0.15 -0.14 16 13 S 0.14 -0.14 23.23 -56.49 -1.31 -1.45 16 14 C -0.20 0.26 9.52 67.10 0.64 0.90 16 15 C -0.11 -0.17 5.33 -18.72 -0.10 -0.27 16 16 C -0.07 -0.01 2.75 71.23 0.20 0.19 16 17 O -0.55 -1.01 12.88 -148.98 -1.92 -2.93 16 18 Si 0.99 -2.33 25.72 68.60 1.76 -0.56 16 19 H -0.24 1.09 6.88 99.48 0.68 1.77 16 20 H -0.27 -0.43 7.11 99.48 0.71 0.28 16 21 H -0.25 0.31 7.11 99.48 0.71 1.02 16 22 C -0.09 -0.40 6.01 -20.37 -0.12 -0.52 16 23 C -0.01 -0.07 9.41 23.00 0.22 0.14 16 24 H 0.08 -0.32 7.96 -2.39 -0.02 -0.34 16 25 H 0.07 -0.14 7.96 -2.38 -0.02 -0.16 16 26 H 0.06 -0.02 7.96 -2.39 -0.02 -0.03 16 27 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 28 H 0.08 -0.21 7.96 -2.38 -0.02 -0.23 16 29 H 0.08 -0.41 7.96 -2.39 -0.02 -0.43 16 30 H 0.05 0.43 6.28 -2.38 -0.01 0.41 16 31 H 0.06 0.25 7.96 -2.38 -0.02 0.23 16 32 H 0.06 0.51 7.42 -2.38 -0.02 0.49 16 33 H 0.14 -0.76 7.96 -2.39 -0.02 -0.78 16 34 H 0.07 0.11 7.52 -2.38 -0.02 0.09 16 35 H 0.17 -0.60 7.59 -2.91 -0.02 -0.62 16 36 H 0.16 -0.96 8.06 -2.91 -0.02 -0.98 16 37 H 0.19 -1.12 5.57 -2.91 -0.02 -1.14 16 38 H 0.12 0.03 7.96 -2.39 -0.02 0.01 16 39 H 0.39 -2.08 8.70 -74.06 -0.64 -2.72 16 40 H 0.14 1.09 7.60 -2.91 -0.02 1.07 16 Total: 0.00 -14.13 347.99 5.38 -8.76 By element: Atomic # 1 Polarization: -3.36 SS G_CDS: 1.15 Total: -2.21 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: 5.14 Total: 7.06 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: -2.20 Total: -10.37 kcal Atomic # 14 Polarization: -4.38 SS G_CDS: 2.60 Total: -1.79 kcal Atomic # 16 Polarization: -0.14 SS G_CDS: -1.31 Total: -1.45 kcal Total: -14.13 5.38 -8.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13444986_4858416.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.068 kcal (2) G-P(sol) polarization free energy of solvation -14.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds