Wall clock time and date at job start Sat Mar 6 2021 03:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35647 * 116.99534 * 2 1 4 4 C 1.40195 * 120.15206 * 180.02562 * 3 2 1 5 5 C 1.47399 * 120.20077 * 359.96713 * 4 3 2 6 6 O 1.21509 * 120.00038 * 359.73394 * 5 4 3 7 7 O 1.34754 * 120.00106 * 179.72629 * 5 4 3 8 8 C 1.45203 * 116.99754 * 180.02562 * 7 5 4 9 9 C 1.50700 * 109.46843 * 180.02562 * 8 7 5 10 10 O 1.20753 * 120.00047 * 0.02562 * 9 8 7 11 11 C 1.50696 * 119.99818 * 179.97438 * 9 8 7 12 12 H 1.09004 * 109.47525 * 45.93453 * 11 9 8 13 13 C 1.52997 * 109.47134 * 165.93537 * 11 9 8 14 14 C 1.52999 * 109.47136 * 60.00284 * 13 11 9 15 15 C 1.53006 * 109.47174 * 59.99832 * 14 13 11 16 16 H 1.09002 * 109.46955 * 60.00184 * 15 14 13 17 17 C 1.53002 * 109.46995 * 180.02562 * 15 14 13 18 18 F 1.39904 * 109.46895 * 179.97438 * 17 15 14 19 19 F 1.39902 * 109.47244 * 299.99884 * 17 15 14 20 20 F 1.39895 * 109.47398 * 60.00139 * 17 15 14 21 21 C 1.52997 * 109.47227 * 300.00113 * 15 14 13 22 22 C 1.52997 * 109.47310 * 285.93816 * 11 9 8 23 23 C 1.39769 * 119.60283 * 179.70191 * 4 3 2 24 24 C 1.37765 * 119.90388 * 0.27440 * 23 4 3 25 25 C 1.38563 * 120.30533 * 359.97438 * 24 23 4 26 26 C 1.50700 * 119.79469 * 180.02562 * 25 24 23 27 27 O 1.42900 * 109.47291 * 245.00272 * 26 25 24 28 28 Si 1.86300 * 109.47405 * 5.00615 * 26 25 24 29 29 C 1.38052 * 120.40718 * 359.97438 * 25 24 23 30 30 H 1.09001 * 109.47464 * 60.00549 * 1 2 3 31 31 H 1.09006 * 109.46866 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47142 * 299.99810 * 1 2 3 33 33 H 1.09001 * 109.47009 * 60.00572 * 8 7 5 34 34 H 1.09006 * 109.46993 * 300.00446 * 8 7 5 35 35 H 1.09002 * 109.47211 * 180.02562 * 13 11 9 36 36 H 1.09000 * 109.47412 * 300.00160 * 13 11 9 37 37 H 1.08994 * 109.47548 * 180.02562 * 14 13 11 38 38 H 1.09002 * 109.47029 * 300.00061 * 14 13 11 39 39 H 1.09002 * 109.47078 * 300.00454 * 21 15 14 40 40 H 1.09000 * 109.47412 * 179.97438 * 21 15 14 41 41 H 1.08997 * 109.47556 * 59.99968 * 22 11 9 42 42 H 1.09002 * 109.47587 * 180.02562 * 22 11 9 43 43 H 1.08005 * 120.04756 * 180.24580 * 23 4 3 44 44 H 1.08001 * 119.84953 * 179.97438 * 24 23 4 45 45 H 1.08999 * 109.47193 * 125.00324 * 26 25 24 46 46 H 0.96701 * 113.99885 * 60.00778 * 27 26 25 47 47 H 1.48504 * 110.00207 * 180.02562 * 28 26 25 48 48 H 1.48505 * 109.99862 * 301.31646 * 28 26 25 49 49 H 1.07991 * 119.95805 * 180.02562 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2087 0.0000 4 6 3.4445 1.2859 -0.0005 5 6 4.2550 0.0547 -0.0004 6 8 3.7102 -1.0314 0.0051 7 8 5.6002 0.1336 -0.0065 8 6 6.3340 -1.1194 -0.0065 9 6 7.8139 -0.8348 -0.0131 10 8 8.2093 0.3061 -0.0168 11 6 8.8002 -1.9741 -0.0138 12 1 8.4949 -2.7187 -0.7490 13 6 10.1905 -1.4449 -0.3712 14 6 10.6193 -0.3998 0.6608 15 6 10.6591 -1.0409 2.0495 16 1 11.3725 -1.8650 2.0489 17 6 11.0872 0.0044 3.0816 18 9 11.1230 -0.5817 4.3515 19 9 12.3584 0.4888 2.7550 20 9 10.1712 1.0617 3.0821 21 6 9.2688 -1.5701 2.4069 22 6 8.8400 -2.6152 1.3748 23 6 4.0670 2.5373 -0.0069 24 6 3.3036 3.6841 -0.0068 25 6 1.9204 3.6033 -0.0010 26 6 1.0965 4.8652 -0.0016 27 8 0.3643 4.9566 1.2222 28 14 2.2215 6.3413 -0.1638 29 6 1.2923 2.3739 0.0042 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 6.0704 -1.6948 -0.8939 34 1 6.0780 -1.6904 0.8861 35 1 10.9039 -2.2690 -0.3722 36 1 10.1622 -0.9882 -1.3606 37 1 11.6095 -0.0224 0.4059 38 1 9.9058 0.4243 0.6613 39 1 8.5553 -0.7461 2.4074 40 1 9.2972 -2.0272 3.3961 41 1 7.8496 -2.9923 1.6295 42 1 9.5538 -3.4390 1.3745 43 1 5.1449 2.6051 -0.0113 44 1 3.7855 4.6506 -0.0112 45 1 0.4009 4.8446 -0.8405 46 1 0.9208 4.9796 2.0127 47 1 1.4212 7.5922 -0.1650 48 1 3.1955 6.3632 0.9570 49 1 0.2138 2.3194 0.0083 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13470092_12428076.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 03:51:15 Heat of formation + Delta-G solvation = -305.856177 kcal Electronic energy + Delta-G solvation = -39297.914115 eV Core-core repulsion = 33549.712414 eV Total energy + Delta-G solvation = -5748.201701 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 403.142 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -51.15275 -48.64613 -48.63097 -42.12184 -41.60495 -40.70380 -39.22004 -38.39723 -37.50999 -37.33182 -33.55916 -33.19143 -31.97224 -31.45315 -30.19162 -28.57497 -27.64294 -26.74887 -24.24973 -23.86659 -23.63238 -23.28885 -22.15415 -21.89534 -20.25918 -19.50841 -19.29748 -19.15096 -18.88682 -18.61724 -18.16788 -18.06452 -17.82948 -16.95363 -16.90644 -16.82030 -16.54326 -16.21565 -15.99857 -15.87780 -15.72182 -15.57147 -15.35130 -15.13792 -15.08600 -14.96020 -14.82459 -14.79964 -14.76712 -14.49155 -14.40633 -14.10582 -13.85971 -13.60951 -13.52735 -13.44699 -13.23903 -13.20674 -12.98619 -12.85279 -12.65809 -12.36329 -12.16713 -12.16012 -12.08471 -11.89498 -11.73372 -11.59481 -11.38740 -11.26773 -10.72698 -10.27837 -10.23163 -9.49746 -4.91194 -0.55448 0.20227 0.82222 1.24717 1.31551 1.34701 1.60863 1.77252 1.95264 2.12836 2.49493 2.74301 2.86382 2.95860 3.03764 3.26749 3.43910 3.57952 3.61483 3.65319 3.70801 3.85437 3.93063 3.94623 4.01776 4.02297 4.10962 4.13979 4.18387 4.24594 4.28333 4.29471 4.32190 4.42081 4.49968 4.50555 4.65648 4.68725 4.70304 4.85183 4.86198 4.92374 4.99736 5.00360 5.11069 5.15583 5.17034 5.19207 5.21308 5.39574 5.49019 6.16847 6.41617 6.43761 6.62978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.310 6.310 3 C 0.181 3.819 4 C -0.184 4.184 5 C 0.510 3.490 6 O -0.515 6.515 7 O -0.346 6.346 8 C 0.005 3.995 9 C 0.364 3.636 10 O -0.450 6.450 11 C -0.127 4.127 12 H 0.142 0.858 13 C -0.097 4.097 14 C -0.146 4.146 15 C -0.122 4.122 16 H 0.137 0.863 17 C 0.443 3.557 18 F -0.191 7.191 19 F -0.192 7.192 20 F -0.194 7.194 21 C -0.130 4.130 22 C -0.101 4.101 23 C -0.013 4.013 24 C -0.169 4.169 25 C -0.034 4.034 26 C -0.087 4.087 27 O -0.543 6.543 28 Si 0.768 3.232 29 C -0.198 4.198 30 H 0.073 0.927 31 H 0.115 0.885 32 H 0.068 0.932 33 H 0.122 0.878 34 H 0.117 0.883 35 H 0.100 0.900 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.054 0.946 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.110 0.890 43 H 0.158 0.842 44 H 0.157 0.843 45 H 0.136 0.864 46 H 0.388 0.612 47 H -0.301 1.301 48 H -0.279 1.279 49 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.418 -3.781 -4.045 5.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.222 6.222 3 C 0.133 3.867 4 C -0.186 4.186 5 C 0.356 3.644 6 O -0.405 6.405 7 O -0.263 6.263 8 C -0.069 4.069 9 C 0.239 3.761 10 O -0.323 6.323 11 C -0.146 4.146 12 H 0.160 0.840 13 C -0.134 4.134 14 C -0.183 4.183 15 C -0.141 4.141 16 H 0.155 0.845 17 C 0.390 3.610 18 F -0.172 7.172 19 F -0.173 7.173 20 F -0.176 7.176 21 C -0.168 4.168 22 C -0.138 4.138 23 C -0.031 4.031 24 C -0.186 4.186 25 C -0.035 4.035 26 C -0.195 4.195 27 O -0.352 6.352 28 Si 0.673 3.327 29 C -0.216 4.216 30 H 0.091 0.909 31 H 0.133 0.867 32 H 0.087 0.913 33 H 0.140 0.860 34 H 0.135 0.865 35 H 0.119 0.881 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.106 0.894 39 H 0.073 0.927 40 H 0.106 0.894 41 H 0.112 0.888 42 H 0.129 0.871 43 H 0.175 0.825 44 H 0.174 0.826 45 H 0.154 0.846 46 H 0.238 0.762 47 H -0.229 1.229 48 H -0.205 1.205 49 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.475 -2.975 -4.062 5.057 hybrid contribution -0.504 0.028 1.614 1.691 sum -0.979 -2.947 -2.448 3.954 Atomic orbital electron populations 1.23466 0.76147 1.05803 1.02741 1.86295 1.23487 1.25902 1.86469 1.19225 0.90582 0.85686 0.91217 1.18598 0.89751 0.92323 1.17962 1.21102 0.81011 0.89439 0.72812 1.90877 1.72982 1.30198 1.46404 1.86607 1.19024 1.36203 1.84477 1.23836 0.91052 0.85217 1.06801 1.24929 0.89843 0.91180 0.70138 1.90346 1.80938 1.25896 1.35087 1.21819 0.94421 0.96716 1.01618 0.83999 1.21392 0.95027 0.98782 0.98248 1.22047 1.03661 1.00692 0.91872 1.22573 1.01783 0.96420 0.93328 0.84465 1.21191 0.74433 0.82937 0.82479 1.93165 1.96252 1.83856 1.43949 1.93162 1.42102 1.89624 1.92446 1.93161 1.67137 1.60663 1.96646 1.21754 0.93543 0.99887 1.01608 1.21550 1.04849 0.97478 0.89963 1.21449 1.01547 0.89425 0.90716 1.21162 0.92829 0.99389 1.05250 1.20505 0.94091 0.95347 0.93519 1.25363 1.02478 1.01397 0.90309 1.86595 1.36980 1.95483 1.16096 0.93873 0.77054 0.73047 0.88706 1.21207 1.01341 0.90378 1.08690 0.90854 0.86676 0.91332 0.86017 0.86499 0.88134 0.90939 0.91046 0.89399 0.92721 0.89357 0.88756 0.87150 0.82471 0.82589 0.84633 0.76225 1.22889 1.20538 0.82795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.02 9.81 113.37 1.11 1.09 16 2 O -0.31 -2.20 8.57 -68.69 -0.59 -2.79 16 3 C 0.18 0.99 6.70 22.86 0.15 1.14 16 4 C -0.18 -1.13 5.89 -20.02 -0.12 -1.25 16 5 C 0.51 4.40 7.89 70.23 0.55 4.95 16 6 O -0.51 -6.65 14.95 26.81 0.40 -6.25 16 7 O -0.35 -1.99 9.01 -50.25 -0.45 -2.44 16 8 C 0.00 0.00 5.87 71.24 0.42 0.41 16 9 C 0.36 -0.58 5.12 29.10 0.15 -0.43 16 10 O -0.45 -2.58 13.37 17.42 0.23 -2.34 16 11 C -0.13 1.09 2.94 -11.54 -0.03 1.06 16 12 H 0.14 -2.03 8.14 -2.39 -0.02 -2.05 16 13 C -0.10 0.64 5.21 30.59 0.16 0.80 16 14 C -0.15 0.17 4.67 30.60 0.14 0.31 16 15 C -0.12 0.30 2.17 -10.79 -0.02 0.27 16 16 H 0.14 -0.99 8.14 -2.39 -0.02 -1.01 16 17 C 0.44 1.84 2.69 71.98 0.19 2.03 16 18 F -0.19 -1.01 16.80 44.97 0.76 -0.26 16 19 F -0.19 -1.20 16.80 44.97 0.76 -0.45 16 20 F -0.19 -1.65 16.28 44.97 0.73 -0.91 16 21 C -0.13 0.54 4.74 30.60 0.14 0.69 16 22 C -0.10 1.02 5.42 30.60 0.17 1.19 16 23 C -0.01 -0.02 9.61 22.53 0.22 0.20 16 24 C -0.17 0.29 8.64 22.24 0.19 0.48 16 25 C -0.03 0.05 5.36 -19.83 -0.11 -0.06 16 26 C -0.09 0.28 2.79 71.24 0.20 0.48 16 27 O -0.54 0.05 12.83 -148.98 -1.91 -1.86 16 28 Si 0.77 -2.97 29.86 68.60 2.05 -0.92 16 29 C -0.20 -0.17 8.65 22.34 0.19 0.03 16 30 H 0.07 -0.33 7.67 -2.39 -0.02 -0.35 16 31 H 0.11 -0.46 8.14 -2.38 -0.02 -0.48 16 32 H 0.07 -0.25 7.65 -2.39 -0.02 -0.27 16 33 H 0.12 -0.52 8.14 -2.39 -0.02 -0.54 16 34 H 0.12 -0.42 7.84 -2.38 -0.02 -0.44 16 35 H 0.10 -1.08 8.14 -2.39 -0.02 -1.10 16 36 H 0.07 -0.37 8.14 -2.39 -0.02 -0.39 16 37 H 0.07 -0.04 7.80 -2.39 -0.02 -0.06 16 38 H 0.09 0.41 4.72 -2.39 -0.01 0.40 16 39 H 0.05 0.02 6.84 -2.39 -0.02 0.01 16 40 H 0.09 -0.43 7.80 -2.39 -0.02 -0.45 16 41 H 0.09 -1.14 7.84 -2.39 -0.02 -1.16 16 42 H 0.11 -1.52 8.14 -2.39 -0.02 -1.54 16 43 H 0.16 -0.05 7.61 -2.91 -0.02 -0.07 16 44 H 0.16 -0.92 4.81 -2.91 -0.01 -0.93 16 45 H 0.14 -0.76 7.96 -2.39 -0.02 -0.78 16 46 H 0.39 -2.04 8.70 -74.06 -0.64 -2.68 16 47 H -0.30 -1.21 7.11 99.48 0.71 -0.50 16 48 H -0.28 0.02 7.00 99.48 0.70 0.72 16 49 H 0.15 -0.32 6.30 -2.92 -0.02 -0.34 16 Total: 0.00 -24.94 407.28 6.10 -18.84 By element: Atomic # 1 Polarization: -14.42 SS G_CDS: 0.41 Total: -14.00 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: 3.71 Total: 13.38 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -2.32 Total: -15.68 kcal Atomic # 9 Polarization: -3.86 SS G_CDS: 2.24 Total: -1.62 kcal Atomic # 14 Polarization: -2.97 SS G_CDS: 2.05 Total: -0.92 kcal Total: -24.94 6.10 -18.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13470092_12428076.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -287.016 kcal (2) G-P(sol) polarization free energy of solvation -24.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -311.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -305.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds