Wall clock time and date at job start Sat Mar 6 2021 04:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35632 * 117.00021 * 2 1 4 4 C 1.40192 * 120.15675 * 179.97438 * 3 2 1 5 5 C 1.47402 * 120.19621 * 359.97438 * 4 3 2 6 6 O 1.21507 * 119.99877 * 359.72241 * 5 4 3 7 7 O 1.34754 * 120.00157 * 179.97438 * 5 4 3 8 8 C 1.45199 * 117.00071 * 179.72331 * 7 5 4 9 9 C 1.53003 * 109.46980 * 179.97438 * 8 7 5 10 10 H 1.08999 * 109.46600 * 180.02562 * 9 8 7 11 11 O 1.42968 * 109.47203 * 299.99948 * 9 8 7 12 12 C 1.43090 * 113.76746 * 178.79118 * 11 9 8 13 13 C 1.53257 * 108.94582 * 302.03498 * 12 11 9 14 14 H 1.09006 * 109.57465 * 294.71356 * 13 12 11 15 15 N 1.46498 * 109.57615 * 174.33291 * 13 12 11 16 16 C 1.34530 * 124.46023 * 300.33798 * 15 13 12 17 17 O 1.21440 * 125.70805 * 0.03574 * 16 15 13 18 18 C 1.47817 * 108.58060 * 179.90600 * 16 15 13 19 19 C 1.40952 * 105.87681 * 0.34377 * 18 16 15 20 20 C 1.38571 * 119.81388 * 179.79558 * 19 18 16 21 21 C 1.38613 * 119.72207 * 0.02562 * 20 19 18 22 22 C 1.38229 * 120.46053 * 359.96122 * 21 20 19 23 23 C 1.38563 * 134.29949 * 180.09871 * 18 16 15 24 24 C 1.34527 * 124.46282 * 120.63473 * 15 13 12 25 25 O 1.21444 * 125.70652 * 359.94508 * 24 15 13 26 26 C 1.53261 * 108.84849 * 54.52147 * 13 12 11 27 27 O 1.42961 * 109.46783 * 60.00136 * 9 8 7 28 28 C 1.39772 * 119.60895 * 180.25145 * 4 3 2 29 29 C 1.37767 * 119.89813 * 359.44986 * 28 4 3 30 30 C 1.38566 * 120.30779 * 0.53910 * 29 28 4 31 31 C 1.50695 * 119.79701 * 179.74007 * 30 29 28 32 32 O 1.42900 * 109.47188 * 245.01601 * 31 30 29 33 33 Si 1.86301 * 109.47145 * 5.01729 * 31 30 29 34 34 C 1.38049 * 120.40264 * 359.75627 * 30 29 28 35 35 H 1.09007 * 109.46925 * 179.97438 * 1 2 3 36 36 H 1.08994 * 109.47140 * 299.99710 * 1 2 3 37 37 H 1.08997 * 109.46961 * 60.00166 * 1 2 3 38 38 H 1.08997 * 109.46967 * 299.99910 * 8 7 5 39 39 H 1.09002 * 109.46640 * 60.00114 * 8 7 5 40 40 H 1.09001 * 109.55713 * 182.19075 * 12 11 9 41 41 H 1.09002 * 109.64685 * 61.92480 * 12 11 9 42 42 H 1.08004 * 120.13205 * 179.97438 * 20 19 18 43 43 H 1.07992 * 119.76722 * 179.97438 * 21 20 19 44 44 H 1.07993 * 119.77111 * 180.02562 * 22 21 20 45 45 H 1.07999 * 120.13943 * 0.29867 * 23 18 16 46 46 H 1.08990 * 109.56156 * 185.63886 * 26 13 12 47 47 H 1.09001 * 109.64305 * 65.36454 * 26 13 12 48 48 H 1.08000 * 120.05084 * 179.71248 * 28 4 3 49 49 H 1.07998 * 119.84251 * 180.25254 * 29 28 4 50 50 H 1.08999 * 109.47313 * 125.01711 * 31 30 29 51 51 H 0.96703 * 114.00405 * 179.97438 * 32 31 30 52 52 H 1.48501 * 109.99909 * 300.00035 * 33 31 30 53 53 H 1.48500 * 110.00130 * 61.32095 * 33 31 30 54 54 H 1.08007 * 119.95108 * 179.97438 * 34 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2085 0.0000 4 6 3.4446 1.2857 0.0005 5 6 4.2550 0.0544 0.0017 6 8 3.7100 -1.0316 0.0073 7 8 5.6002 0.1332 0.0017 8 6 6.3339 -1.1198 0.0091 9 6 7.8365 -0.8309 0.0073 10 1 8.3872 -1.7715 0.0124 11 8 8.1772 -0.0861 -1.1645 12 6 9.5635 0.2589 -1.2457 13 6 9.9477 1.0709 -0.0040 14 1 9.4141 2.0214 -0.0096 15 7 11.3920 1.3161 -0.0055 16 6 12.3282 0.3500 -0.0002 17 8 12.1133 -0.8452 0.0059 18 6 13.6622 0.9867 -0.0061 19 6 13.4262 2.3764 -0.0070 20 6 14.4962 3.2569 -0.0080 21 6 15.7917 2.7641 -0.0086 22 6 16.0231 1.4013 -0.0075 23 6 14.9627 0.5086 -0.0063 24 6 11.9569 2.5371 -0.0066 25 8 11.3595 3.5944 -0.0075 26 6 9.5635 0.2737 1.2473 27 8 8.1772 -0.0723 1.1701 28 6 4.0672 2.5371 0.0059 29 6 3.3039 3.6839 -0.0009 30 6 1.9206 3.6032 -0.0018 31 6 1.0968 4.8651 -0.0033 32 8 0.3591 4.9538 1.2173 33 14 2.2226 6.3414 -0.1573 34 6 1.2925 2.3739 -0.0009 35 1 -0.3633 -1.0277 -0.0005 36 1 -0.3633 0.5138 0.8900 37 1 -0.3633 0.5138 -0.8900 38 1 6.0738 -1.6878 0.9022 39 1 6.0744 -1.6979 -0.8777 40 1 9.7391 0.8557 -2.1408 41 1 10.1652 -0.6489 -1.2886 42 1 14.3212 4.3227 -0.0091 43 1 16.6261 3.4497 -0.0098 44 1 17.0370 1.0295 -0.0076 45 1 15.1494 -0.5551 -0.0061 46 1 9.7392 0.8810 2.1351 47 1 10.1637 -0.6346 1.3017 48 1 5.1451 2.6048 0.0110 49 1 3.7859 4.6503 -0.0009 50 1 0.4050 4.8463 -0.8454 51 1 -0.1946 5.7437 1.2858 52 1 3.1709 6.3784 0.9849 53 1 2.9721 6.2773 -1.4377 54 1 0.2138 2.3194 -0.0011 There are 83 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 83 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13470092_13594054.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 04:34:51 Heat of formation + Delta-G solvation = -193.967123 kcal Electronic energy + Delta-G solvation = -45645.775859 eV Core-core repulsion = 39675.496247 eV Total energy + Delta-G solvation = -5970.279612 eV No. of doubly occupied orbitals = 83 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 456.148 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -43.74711 -42.11663 -41.40614 -40.75943 -39.98953 -39.50373 -39.17947 -37.67047 -37.40215 -37.20662 -37.15979 -34.60530 -33.42053 -32.19013 -31.77540 -31.58883 -29.99578 -28.63292 -27.65357 -27.55551 -26.38624 -25.46656 -24.42952 -23.71716 -23.52559 -23.39552 -22.45212 -22.03341 -21.03835 -19.54248 -19.22220 -19.03445 -18.96319 -18.59849 -18.50316 -18.23099 -17.76282 -17.75546 -17.40028 -17.36931 -17.17530 -16.77675 -16.76155 -16.51949 -16.26747 -16.22398 -15.93265 -15.65196 -15.60830 -15.51639 -15.36952 -15.09433 -14.84372 -14.78865 -14.59662 -14.59014 -14.51528 -14.26349 -14.04587 -13.83262 -13.65264 -13.48628 -13.30980 -12.99103 -12.86123 -12.72509 -12.63270 -12.52441 -12.45195 -12.29715 -12.20815 -12.04339 -11.90964 -11.74320 -11.70932 -11.57656 -11.02303 -10.91091 -10.50447 -10.28575 -10.27399 -10.20668 -9.62094 -4.94953 -1.14567 -0.65838 -0.08785 0.05027 0.83028 0.85604 1.22576 1.27986 1.34365 1.57855 1.66197 1.97322 2.04925 2.12166 2.18191 2.36494 2.41037 2.54562 3.03153 3.09935 3.15006 3.17052 3.34264 3.40911 3.50697 3.51040 3.63004 3.63497 3.74330 3.81986 3.88985 3.99849 4.00814 4.01715 4.02297 4.09615 4.12230 4.13351 4.17490 4.20276 4.24220 4.27235 4.36692 4.39906 4.42393 4.48793 4.54877 4.63806 4.74043 4.77911 4.82392 4.84987 5.04655 5.09894 5.15933 5.22520 5.30513 5.33229 5.37363 5.62887 5.65714 5.88528 6.09115 6.30605 6.55105 6.87048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.309 6.309 3 C 0.186 3.814 4 C -0.185 4.185 5 C 0.511 3.489 6 O -0.517 6.517 7 O -0.342 6.342 8 C 0.081 3.919 9 C 0.243 3.757 10 H 0.111 0.889 11 O -0.384 6.384 12 C 0.051 3.949 13 C 0.076 3.924 14 H 0.118 0.882 15 N -0.569 5.569 16 C 0.576 3.424 17 O -0.480 6.480 18 C -0.159 4.159 19 C -0.159 4.159 20 C -0.044 4.044 21 C -0.083 4.083 22 C -0.083 4.083 23 C -0.042 4.042 24 C 0.576 3.424 25 O -0.489 6.489 26 C 0.051 3.949 27 O -0.385 6.385 28 C -0.012 4.012 29 C -0.189 4.189 30 C -0.005 4.005 31 C -0.085 4.085 32 O -0.560 6.560 33 Si 0.776 3.224 34 C -0.193 4.193 35 H 0.117 0.883 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.115 0.885 41 H 0.077 0.923 42 H 0.153 0.847 43 H 0.176 0.824 44 H 0.177 0.823 45 H 0.156 0.844 46 H 0.114 0.886 47 H 0.077 0.923 48 H 0.155 0.845 49 H 0.133 0.867 50 H 0.108 0.892 51 H 0.408 0.592 52 H -0.295 1.295 53 H -0.286 1.286 54 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.502 5.402 -1.232 7.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.220 6.220 3 C 0.138 3.862 4 C -0.187 4.187 5 C 0.357 3.643 6 O -0.407 6.407 7 O -0.259 6.259 8 C 0.008 3.992 9 C 0.148 3.852 10 H 0.128 0.872 11 O -0.304 6.304 12 C -0.026 4.026 13 C -0.026 4.026 14 H 0.136 0.864 15 N -0.314 5.314 16 C 0.367 3.633 17 O -0.353 6.353 18 C -0.163 4.163 19 C -0.163 4.163 20 C -0.063 4.063 21 C -0.101 4.101 22 C -0.101 4.101 23 C -0.061 4.061 24 C 0.367 3.633 25 O -0.362 6.362 26 C -0.026 4.026 27 O -0.304 6.304 28 C -0.030 4.030 29 C -0.207 4.207 30 C -0.006 4.006 31 C -0.194 4.194 32 O -0.370 6.370 33 Si 0.681 3.319 34 C -0.211 4.211 35 H 0.136 0.864 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.133 0.867 41 H 0.095 0.905 42 H 0.171 0.829 43 H 0.194 0.806 44 H 0.194 0.806 45 H 0.174 0.826 46 H 0.132 0.868 47 H 0.095 0.905 48 H 0.172 0.828 49 H 0.150 0.850 50 H 0.126 0.874 51 H 0.260 0.740 52 H -0.222 1.222 53 H -0.213 1.213 54 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 4.690 4.557 -1.196 6.648 hybrid contribution -0.144 -0.881 -0.011 0.893 sum 4.546 3.676 -1.207 5.970 Atomic orbital electron populations 1.23534 0.75787 1.06060 1.02998 1.86306 1.23877 1.25558 1.86258 1.19218 0.90459 0.85880 0.90646 1.18576 0.90085 0.92083 1.17990 1.21007 0.81190 0.89254 0.72799 1.90865 1.73083 1.30140 1.46592 1.86622 1.18761 1.36358 1.84149 1.23290 0.86266 0.84327 1.05337 1.23844 0.93759 0.91728 0.75826 0.87198 1.88235 1.25304 1.74851 1.41975 1.23034 0.82316 0.99749 0.97513 1.22565 0.78180 1.03077 0.98782 0.86369 1.46467 1.07674 1.08997 1.68248 1.18744 0.85934 0.84998 0.73583 1.90793 1.85389 1.14224 1.44897 1.20446 0.94028 0.93717 1.08076 1.20427 0.92305 0.95407 1.08160 1.21167 0.90737 1.00642 0.93758 1.21961 0.96593 0.96761 0.94789 1.21972 1.00581 0.92813 0.94749 1.21168 0.88820 1.02482 0.93609 1.18796 0.88754 0.82258 0.73486 1.90824 1.71040 1.29192 1.45112 1.23039 0.82317 0.99879 0.97413 1.88236 1.25319 1.74176 1.42689 1.21329 1.01312 0.89501 0.90855 1.20946 0.93661 0.98508 1.07576 1.19850 0.93105 0.95071 0.92529 1.24914 1.01817 1.01323 0.91354 1.86441 1.63626 1.50585 1.36397 0.94374 0.78791 0.82200 0.76490 1.21265 1.01741 0.89889 1.08248 0.86435 0.91005 0.90572 0.87725 0.87643 0.86692 0.90509 0.82903 0.80617 0.80557 0.82613 0.86767 0.90507 0.82769 0.84972 0.87408 0.74040 1.22241 1.21346 0.81678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.01 9.81 113.37 1.11 1.12 16 2 O -0.31 -3.42 8.57 -68.53 -0.59 -4.01 16 3 C 0.19 1.97 6.70 22.86 0.15 2.12 16 4 C -0.19 -2.31 5.89 -20.02 -0.12 -2.42 16 5 C 0.51 7.60 7.89 70.24 0.55 8.15 16 6 O -0.52 -9.79 14.95 26.81 0.40 -9.39 16 7 O -0.34 -4.19 9.27 -50.36 -0.47 -4.65 16 8 C 0.08 0.58 5.56 71.98 0.40 0.98 16 9 C 0.24 1.39 3.59 71.98 0.26 1.65 16 10 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 11 O -0.38 -2.97 10.44 -122.14 -1.28 -4.25 16 12 C 0.05 0.23 6.32 72.07 0.46 0.69 16 13 C 0.08 0.39 3.07 45.17 0.14 0.52 16 14 H 0.12 0.85 7.60 -2.38 -0.02 0.83 16 15 N -0.57 -2.59 2.53 -739.57 -1.87 -4.46 16 16 C 0.58 2.37 7.35 86.82 0.64 3.01 16 17 O -0.48 -3.52 15.16 -3.53 -0.05 -3.58 16 18 C -0.16 -0.03 6.41 -20.00 -0.13 -0.16 16 19 C -0.16 -0.14 6.41 -20.00 -0.13 -0.27 16 20 C -0.04 0.20 10.09 22.44 0.23 0.43 16 21 C -0.08 0.82 10.04 22.36 0.22 1.05 16 22 C -0.08 0.85 10.04 22.36 0.22 1.07 16 23 C -0.04 0.23 10.09 22.44 0.23 0.45 16 24 C 0.58 3.38 8.02 86.81 0.70 4.08 16 25 O -0.49 -5.60 17.44 -3.54 -0.06 -5.66 16 26 C 0.05 0.24 6.32 72.07 0.46 0.69 16 27 O -0.38 -3.05 10.44 -122.14 -1.27 -4.32 16 28 C -0.01 -0.11 9.61 22.53 0.22 0.11 16 29 C -0.19 -1.39 8.64 22.24 0.19 -1.20 16 30 C -0.01 -0.03 5.39 -19.83 -0.11 -0.13 16 31 C -0.08 0.14 2.78 71.23 0.20 0.34 16 32 O -0.56 1.03 12.81 -148.98 -1.91 -0.87 16 33 Si 0.78 -1.90 29.83 68.60 2.05 0.14 16 34 C -0.19 -1.09 8.65 22.34 0.19 -0.90 16 35 H 0.12 -0.22 8.14 -2.38 -0.02 -0.24 16 36 H 0.07 -0.11 7.66 -2.39 -0.02 -0.13 16 37 H 0.08 -0.21 7.66 -2.39 -0.02 -0.23 16 38 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 41 H 0.08 0.32 6.67 -2.39 -0.02 0.30 16 42 H 0.15 -1.04 8.06 -2.91 -0.02 -1.07 16 43 H 0.18 -2.80 8.06 -2.91 -0.02 -2.83 16 44 H 0.18 -2.87 8.06 -2.91 -0.02 -2.90 16 45 H 0.16 -1.27 8.06 -2.91 -0.02 -1.29 16 46 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 47 H 0.08 0.33 6.68 -2.39 -0.02 0.31 16 48 H 0.15 1.10 7.61 -2.91 -0.02 1.08 16 49 H 0.13 0.75 4.83 -2.91 -0.01 0.74 16 50 H 0.11 -0.75 7.96 -2.39 -0.02 -0.77 16 51 H 0.41 -5.16 8.74 -74.06 -0.65 -5.80 16 52 H -0.29 -1.59 7.04 99.48 0.70 -0.89 16 53 H -0.29 -0.93 7.11 99.48 0.71 -0.22 16 54 H 0.17 0.07 6.30 -2.91 -0.02 0.06 16 Total: 0.00 -32.28 457.06 1.42 -30.86 By element: Atomic # 1 Polarization: -11.60 SS G_CDS: 0.39 Total: -11.21 kcal Atomic # 6 Polarization: 15.32 SS G_CDS: 6.08 Total: 21.40 kcal Atomic # 7 Polarization: -2.59 SS G_CDS: -1.87 Total: -4.46 kcal Atomic # 8 Polarization: -31.50 SS G_CDS: -5.23 Total: -36.73 kcal Atomic # 14 Polarization: -1.90 SS G_CDS: 2.05 Total: 0.14 kcal Total: -32.28 1.42 -30.86 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13470092_13594054.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.108 kcal (2) G-P(sol) polarization free energy of solvation -32.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds