Wall clock time and date at job start Sat Mar 6 2021 05:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35636 * 116.99891 * 2 1 4 4 C 1.40195 * 120.15585 * 179.97438 * 3 2 1 5 5 C 1.47391 * 120.19826 * 0.02706 * 4 3 2 6 6 O 1.21515 * 120.00076 * 359.97438 * 5 4 3 7 7 O 1.34754 * 120.00369 * 180.02562 * 5 4 3 8 8 C 1.45199 * 117.00008 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47075 * 179.97438 * 8 7 5 10 10 H 1.09006 * 112.85138 * 43.80217 * 9 8 7 11 11 C 1.53781 * 113.61559 * 174.99943 * 9 8 7 12 12 C 1.53782 * 87.08224 * 139.98357 * 11 9 8 13 13 H 1.09005 * 113.61892 * 89.19814 * 12 11 9 14 14 O 1.42898 * 113.61368 * 220.02150 * 12 11 9 15 15 C 1.42902 * 113.99944 * 209.99599 * 14 12 11 16 16 C 1.53005 * 109.46895 * 59.99892 * 15 14 12 17 17 C 1.53003 * 109.47063 * 179.97438 * 15 14 12 18 18 C 1.53001 * 109.47230 * 299.99948 * 15 14 12 19 19 C 1.53782 * 87.08134 * 334.56746 * 12 11 9 20 20 C 1.39768 * 119.60380 * 180.29456 * 4 3 2 21 21 C 1.37763 * 119.90676 * 359.45160 * 20 4 3 22 22 C 1.38569 * 120.30518 * 0.55001 * 21 20 4 23 23 C 1.50701 * 119.80024 * 179.69763 * 22 21 20 24 24 O 1.42897 * 109.47124 * 245.02675 * 23 22 21 25 25 Si 1.86299 * 109.46910 * 5.02588 * 23 22 21 26 26 C 1.38050 * 120.40161 * 359.72787 * 22 21 20 27 27 H 1.09004 * 109.46930 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47567 * 300.00334 * 1 2 3 29 29 H 1.09001 * 109.47503 * 60.00470 * 1 2 3 30 30 H 1.09002 * 109.47177 * 299.99778 * 8 7 5 31 31 H 1.09001 * 109.47399 * 59.99949 * 8 7 5 32 32 H 1.09003 * 113.61181 * 254.52982 * 11 9 8 33 33 H 1.08994 * 113.61519 * 25.43167 * 11 9 8 34 34 H 1.08994 * 109.47229 * 60.00405 * 16 15 14 35 35 H 1.09000 * 109.46646 * 179.97438 * 16 15 14 36 36 H 1.08994 * 109.47170 * 299.99817 * 16 15 14 37 37 H 1.09000 * 109.46689 * 60.00492 * 17 15 14 38 38 H 1.09003 * 109.46727 * 179.97438 * 17 15 14 39 39 H 1.08999 * 109.47007 * 300.00388 * 17 15 14 40 40 H 1.08997 * 109.46734 * 59.99882 * 18 15 14 41 41 H 1.08996 * 109.47153 * 179.97438 * 18 15 14 42 42 H 1.09000 * 109.47070 * 299.99517 * 18 15 14 43 43 H 1.08998 * 113.61542 * 270.88622 * 19 12 11 44 44 H 1.08998 * 113.61766 * 139.98331 * 19 12 11 45 45 H 1.08000 * 120.04874 * 179.70715 * 20 4 3 46 46 H 1.07999 * 119.84893 * 180.25544 * 21 20 4 47 47 H 1.09001 * 109.46965 * 125.02334 * 23 22 21 48 48 H 0.96705 * 114.00272 * 60.00094 * 24 23 22 49 49 H 1.48497 * 109.99997 * 179.97438 * 25 23 22 50 50 H 1.48505 * 110.00131 * 301.31645 * 25 23 22 51 51 H 1.08003 * 119.95446 * 180.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2085 0.0000 4 6 3.4446 1.2857 0.0005 5 6 4.2550 0.0546 0.0005 6 8 3.7100 -1.0315 0.0005 7 8 5.6002 0.1334 0.0016 8 6 6.3339 -1.1196 0.0020 9 6 7.8364 -0.8308 0.0026 10 1 8.1149 -0.0388 0.6978 11 6 8.7062 -2.0929 0.1259 12 6 9.6484 -1.4489 -0.9049 13 1 10.4241 -0.8266 -0.4587 14 8 10.1627 -2.3730 -1.8660 15 6 11.4593 -2.0341 -2.3620 16 6 12.4543 -1.9900 -1.2005 17 6 11.9080 -3.0868 -3.3776 18 6 11.4042 -0.6629 -3.0387 19 6 8.4303 -0.6544 -1.4049 20 6 4.0670 2.5371 0.0068 21 6 3.3038 3.6840 0.0009 22 6 1.9205 3.6033 0.0003 23 6 1.0966 4.8652 0.0008 24 8 0.3595 4.9523 1.2219 25 14 2.2223 6.3417 -0.1517 26 6 1.2924 2.3739 0.0000 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 6.0734 -1.6928 0.8918 31 1 6.0748 -1.6927 -0.8882 32 1 9.1566 -2.2182 1.1106 33 1 8.2169 -2.9974 -0.2350 34 1 12.4936 -2.9668 -0.7185 35 1 13.4433 -1.7319 -1.5790 36 1 12.1348 -1.2403 -0.4767 37 1 11.1993 -3.1186 -4.2051 38 1 12.8968 -2.8280 -3.7563 39 1 11.9473 -4.0635 -2.8952 40 1 11.0847 0.0868 -2.3148 41 1 12.3933 -0.4042 -3.4166 42 1 10.6954 -0.6943 -3.8662 43 1 7.8655 -1.1657 -2.1844 44 1 8.6579 0.3815 -1.6562 45 1 5.1449 2.6050 0.0120 46 1 3.7858 4.6505 0.0016 47 1 0.4045 4.8475 -0.8411 48 1 0.9127 4.9725 2.0148 49 1 1.4220 7.5926 -0.1531 50 1 3.1918 6.3597 0.9731 51 1 0.2137 2.3194 -0.0009 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_13470092_14598394.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:11:00 Heat of formation + Delta-G solvation = -146.543827 kcal Electronic energy + Delta-G solvation = -31144.556211 eV Core-core repulsion = 26784.313260 eV Total energy + Delta-G solvation = -4360.242951 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 351.186 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.85415 -41.05585 -40.43606 -39.18497 -38.47403 -37.48326 -36.94985 -33.89073 -33.13539 -31.41812 -29.77469 -28.60414 -28.40388 -28.35604 -27.38515 -26.63500 -24.18748 -23.59220 -23.15366 -21.87741 -20.85547 -20.62105 -19.28982 -18.72749 -18.12516 -17.96165 -17.51364 -17.35497 -16.81744 -16.76171 -16.55586 -16.27637 -16.04886 -15.90656 -15.79779 -15.38293 -15.06587 -14.70682 -14.59402 -14.39813 -14.07443 -14.00938 -13.59775 -13.47678 -13.44812 -13.33256 -13.16472 -13.01641 -12.95064 -12.80679 -12.68565 -12.66970 -12.35459 -12.29773 -12.16945 -12.13899 -11.80629 -11.72931 -11.68974 -11.31564 -11.21288 -11.11790 -10.75713 -10.33892 -10.17102 -9.42667 -5.03752 -0.43659 0.23718 1.15249 1.51524 1.58975 1.67261 1.87786 2.15010 2.59609 2.72263 3.18899 3.36784 3.44970 3.54890 3.63767 3.70104 3.76842 3.84731 3.89213 3.92464 3.95802 4.02125 4.07524 4.16629 4.17351 4.18222 4.26859 4.33053 4.42043 4.51246 4.53416 4.55466 4.56387 4.63953 4.66945 4.75109 4.75950 4.80306 4.81391 4.88601 4.91399 4.93390 5.00134 5.03142 5.09490 5.16435 5.20054 5.29058 5.30870 5.37178 5.48668 5.55879 6.22053 6.25906 6.42284 6.95182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.283 6.283 3 C 0.193 3.807 4 C -0.159 4.159 5 C 0.508 3.492 6 O -0.487 6.487 7 O -0.355 6.355 8 C 0.083 3.917 9 C -0.111 4.111 10 H 0.105 0.895 11 C -0.127 4.127 12 C 0.062 3.938 13 H 0.093 0.907 14 O -0.361 6.361 15 C 0.104 3.896 16 C -0.179 4.179 17 C -0.139 4.139 18 C -0.176 4.176 19 C -0.148 4.148 20 C -0.016 4.016 21 C -0.173 4.173 22 C -0.042 4.042 23 C -0.083 4.083 24 O -0.527 6.527 25 Si 0.693 3.307 26 C -0.197 4.197 27 H 0.106 0.894 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.091 0.909 44 H 0.073 0.927 45 H 0.150 0.850 46 H 0.138 0.862 47 H 0.123 0.877 48 H 0.378 0.622 49 H -0.255 1.255 50 H -0.257 1.257 51 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.740 3.177 -1.179 4.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.193 6.193 3 C 0.145 3.855 4 C -0.161 4.161 5 C 0.352 3.648 6 O -0.374 6.374 7 O -0.272 6.272 8 C 0.009 3.991 9 C -0.129 4.129 10 H 0.123 0.877 11 C -0.165 4.165 12 C 0.004 3.996 13 H 0.110 0.890 14 O -0.280 6.280 15 C 0.065 3.935 16 C -0.236 4.236 17 C -0.196 4.196 18 C -0.234 4.234 19 C -0.186 4.186 20 C -0.034 4.034 21 C -0.191 4.191 22 C -0.042 4.042 23 C -0.193 4.193 24 O -0.333 6.333 25 Si 0.593 3.407 26 C -0.216 4.216 27 H 0.125 0.875 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.110 0.890 44 H 0.092 0.908 45 H 0.167 0.833 46 H 0.155 0.845 47 H 0.141 0.859 48 H 0.226 0.774 49 H -0.180 1.180 50 H -0.182 1.182 51 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.357 3.173 -1.286 4.157 hybrid contribution -0.432 -0.166 1.237 1.320 sum 1.925 3.007 -0.049 3.571 Atomic orbital electron populations 1.23252 0.77801 1.04834 1.01677 1.86349 1.21593 1.25164 1.86221 1.19059 0.90545 0.85266 0.90668 1.18486 0.89493 0.92252 1.15895 1.20766 0.81080 0.89144 0.73802 1.90910 1.72647 1.29357 1.44507 1.86499 1.19210 1.36926 1.84576 1.23053 0.89718 0.83366 1.02958 1.22358 0.91641 0.99728 0.99184 0.87689 1.23235 0.96274 0.97604 0.99363 1.23574 0.94002 0.91825 0.90197 0.88972 1.88044 1.32463 1.49127 1.58411 1.21543 0.83295 0.95008 0.93609 1.22471 0.99720 1.02786 0.98668 1.21771 1.01283 0.98362 0.98219 1.22466 1.02795 0.96581 1.01508 1.23632 0.97351 1.01024 0.96564 1.21285 1.00907 0.89729 0.91522 1.20941 0.92879 0.98915 1.06344 1.20362 0.93939 0.95262 0.94651 1.25191 1.02033 1.01777 0.90281 1.86621 1.35933 1.95506 1.15245 0.94759 0.79477 0.76174 0.90257 1.21080 1.00806 0.90734 1.08948 0.87535 0.92178 0.92152 0.90858 0.90747 0.90358 0.88703 0.91612 0.91369 0.92223 0.91753 0.91077 0.91763 0.92267 0.91556 0.91647 0.89037 0.90841 0.83276 0.84509 0.85936 0.77417 1.18045 1.18169 0.83991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 9.81 101.05 0.99 0.98 16 2 O -0.28 -1.05 8.57 -40.49 -0.35 -1.39 16 3 C 0.19 0.52 6.70 -38.67 -0.26 0.26 16 4 C -0.16 -0.42 5.88 -104.87 -0.62 -1.04 16 5 C 0.51 2.22 7.89 34.46 0.27 2.49 16 6 O -0.49 -3.56 14.95 -26.60 -0.40 -3.96 16 7 O -0.35 -0.88 9.47 -40.64 -0.38 -1.26 16 8 C 0.08 0.11 5.31 37.16 0.20 0.31 16 9 C -0.11 0.06 4.02 -89.81 -0.36 -0.30 16 10 H 0.10 -0.14 8.14 -51.93 -0.42 -0.56 16 11 C -0.13 0.06 7.47 -25.92 -0.19 -0.13 16 12 C 0.06 0.00 2.82 -25.92 -0.07 -0.08 16 13 H 0.09 -0.10 5.54 -51.93 -0.29 -0.39 16 14 O -0.36 -0.66 10.00 -35.23 -0.35 -1.01 16 15 C 0.10 0.02 1.11 -90.62 -0.10 -0.08 16 16 C -0.18 0.13 8.38 37.16 0.31 0.44 16 17 C -0.14 0.02 8.84 37.16 0.33 0.35 16 18 C -0.18 0.11 8.39 37.16 0.31 0.42 16 19 C -0.15 0.04 7.46 -25.92 -0.19 -0.16 16 20 C -0.02 0.00 9.61 -39.18 -0.38 -0.38 16 21 C -0.17 0.18 8.64 -39.63 -0.34 -0.16 16 22 C -0.04 0.02 5.36 -104.57 -0.56 -0.54 16 23 C -0.08 0.11 2.79 36.01 0.10 0.21 16 24 O -0.53 -0.10 12.83 -35.23 -0.45 -0.55 16 25 Si 0.69 -1.40 29.86 -169.99 -5.08 -6.48 16 26 C -0.20 -0.13 8.65 -39.47 -0.34 -0.47 16 27 H 0.11 -0.16 8.14 -51.93 -0.42 -0.58 16 28 H 0.06 -0.09 7.66 -51.93 -0.40 -0.48 16 29 H 0.06 -0.10 7.66 -51.93 -0.40 -0.50 16 30 H 0.07 0.11 8.14 -51.93 -0.42 -0.32 16 31 H 0.07 0.14 7.84 -51.93 -0.41 -0.27 16 32 H 0.08 -0.10 8.14 -51.93 -0.42 -0.53 16 33 H 0.09 0.02 8.10 -51.93 -0.42 -0.40 16 34 H 0.06 -0.01 8.14 -51.93 -0.42 -0.44 16 35 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 36 H 0.06 -0.07 6.24 -51.93 -0.32 -0.39 16 37 H 0.06 0.02 8.14 -51.93 -0.42 -0.41 16 38 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 39 H 0.06 0.01 8.14 -51.93 -0.42 -0.41 16 40 H 0.06 -0.05 7.02 -51.93 -0.36 -0.42 16 41 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 42 H 0.06 0.00 8.14 -51.93 -0.42 -0.43 16 43 H 0.09 0.07 7.89 -51.93 -0.41 -0.34 16 44 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 45 H 0.15 -0.28 7.61 -52.49 -0.40 -0.68 16 46 H 0.14 -0.42 4.81 -52.49 -0.25 -0.67 16 47 H 0.12 -0.26 7.96 -51.93 -0.41 -0.67 16 48 H 0.38 -0.97 8.70 45.56 0.40 -0.57 16 49 H -0.26 -0.36 7.11 56.52 0.40 0.05 16 50 H -0.26 0.08 7.00 56.52 0.40 0.48 16 51 H 0.14 -0.07 6.30 -52.48 -0.33 -0.40 16 LS Contribution 409.98 15.07 6.18 6.18 Total: 0.00 -7.70 409.98 -10.02 -17.72 By element: Atomic # 1 Polarization: -3.08 SS G_CDS: -8.29 Total: -11.37 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -0.91 Total: 2.13 kcal Atomic # 8 Polarization: -6.25 SS G_CDS: -1.93 Total: -8.18 kcal Atomic # 14 Polarization: -1.40 SS G_CDS: -5.08 Total: -6.48 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -7.70 -10.02 -17.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13470092_14598394.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.823 kcal (2) G-P(sol) polarization free energy of solvation -7.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds