Wall clock time and date at job start Sat Mar 6 2021 05:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35636 * 116.99891 * 2 1 4 4 C 1.40195 * 120.15585 * 179.97438 * 3 2 1 5 5 C 1.47391 * 120.19826 * 0.02706 * 4 3 2 6 6 O 1.21515 * 120.00076 * 359.97438 * 5 4 3 7 7 O 1.34754 * 120.00369 * 180.02562 * 5 4 3 8 8 C 1.45199 * 117.00008 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47075 * 179.97438 * 8 7 5 10 10 H 1.09006 * 112.85138 * 43.80217 * 9 8 7 11 11 C 1.53781 * 113.61559 * 174.99943 * 9 8 7 12 12 C 1.53782 * 87.08224 * 139.98357 * 11 9 8 13 13 H 1.09005 * 113.61892 * 89.19814 * 12 11 9 14 14 O 1.42898 * 113.61368 * 220.02150 * 12 11 9 15 15 C 1.42902 * 113.99944 * 209.99599 * 14 12 11 16 16 C 1.53005 * 109.46895 * 59.99892 * 15 14 12 17 17 C 1.53003 * 109.47063 * 179.97438 * 15 14 12 18 18 C 1.53001 * 109.47230 * 299.99948 * 15 14 12 19 19 C 1.53782 * 87.08134 * 334.56746 * 12 11 9 20 20 C 1.39768 * 119.60380 * 180.29456 * 4 3 2 21 21 C 1.37763 * 119.90676 * 359.45160 * 20 4 3 22 22 C 1.38569 * 120.30518 * 0.55001 * 21 20 4 23 23 C 1.50701 * 119.80024 * 179.69763 * 22 21 20 24 24 O 1.42897 * 109.47124 * 245.02675 * 23 22 21 25 25 Si 1.86299 * 109.46910 * 5.02588 * 23 22 21 26 26 C 1.38050 * 120.40161 * 359.72787 * 22 21 20 27 27 H 1.09004 * 109.46930 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47567 * 300.00334 * 1 2 3 29 29 H 1.09001 * 109.47503 * 60.00470 * 1 2 3 30 30 H 1.09002 * 109.47177 * 299.99778 * 8 7 5 31 31 H 1.09001 * 109.47399 * 59.99949 * 8 7 5 32 32 H 1.09003 * 113.61181 * 254.52982 * 11 9 8 33 33 H 1.08994 * 113.61519 * 25.43167 * 11 9 8 34 34 H 1.08994 * 109.47229 * 60.00405 * 16 15 14 35 35 H 1.09000 * 109.46646 * 179.97438 * 16 15 14 36 36 H 1.08994 * 109.47170 * 299.99817 * 16 15 14 37 37 H 1.09000 * 109.46689 * 60.00492 * 17 15 14 38 38 H 1.09003 * 109.46727 * 179.97438 * 17 15 14 39 39 H 1.08999 * 109.47007 * 300.00388 * 17 15 14 40 40 H 1.08997 * 109.46734 * 59.99882 * 18 15 14 41 41 H 1.08996 * 109.47153 * 179.97438 * 18 15 14 42 42 H 1.09000 * 109.47070 * 299.99517 * 18 15 14 43 43 H 1.08998 * 113.61542 * 270.88622 * 19 12 11 44 44 H 1.08998 * 113.61766 * 139.98331 * 19 12 11 45 45 H 1.08000 * 120.04874 * 179.70715 * 20 4 3 46 46 H 1.07999 * 119.84893 * 180.25544 * 21 20 4 47 47 H 1.09001 * 109.46965 * 125.02334 * 23 22 21 48 48 H 0.96705 * 114.00272 * 60.00094 * 24 23 22 49 49 H 1.48497 * 109.99997 * 179.97438 * 25 23 22 50 50 H 1.48505 * 110.00131 * 301.31645 * 25 23 22 51 51 H 1.08003 * 119.95446 * 180.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2085 0.0000 4 6 3.4446 1.2857 0.0005 5 6 4.2550 0.0546 0.0005 6 8 3.7100 -1.0315 0.0005 7 8 5.6002 0.1334 0.0016 8 6 6.3339 -1.1196 0.0020 9 6 7.8364 -0.8308 0.0026 10 1 8.1149 -0.0388 0.6978 11 6 8.7062 -2.0929 0.1259 12 6 9.6484 -1.4489 -0.9049 13 1 10.4241 -0.8266 -0.4587 14 8 10.1627 -2.3730 -1.8660 15 6 11.4593 -2.0341 -2.3620 16 6 12.4543 -1.9900 -1.2005 17 6 11.9080 -3.0868 -3.3776 18 6 11.4042 -0.6629 -3.0387 19 6 8.4303 -0.6544 -1.4049 20 6 4.0670 2.5371 0.0068 21 6 3.3038 3.6840 0.0009 22 6 1.9205 3.6033 0.0003 23 6 1.0966 4.8652 0.0008 24 8 0.3595 4.9523 1.2219 25 14 2.2223 6.3417 -0.1517 26 6 1.2924 2.3739 0.0000 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 6.0734 -1.6928 0.8918 31 1 6.0748 -1.6927 -0.8882 32 1 9.1566 -2.2182 1.1106 33 1 8.2169 -2.9974 -0.2350 34 1 12.4936 -2.9668 -0.7185 35 1 13.4433 -1.7319 -1.5790 36 1 12.1348 -1.2403 -0.4767 37 1 11.1993 -3.1186 -4.2051 38 1 12.8968 -2.8280 -3.7563 39 1 11.9473 -4.0635 -2.8952 40 1 11.0847 0.0868 -2.3148 41 1 12.3933 -0.4042 -3.4166 42 1 10.6954 -0.6943 -3.8662 43 1 7.8655 -1.1657 -2.1844 44 1 8.6579 0.3815 -1.6562 45 1 5.1449 2.6050 0.0120 46 1 3.7858 4.6505 0.0016 47 1 0.4045 4.8475 -0.8411 48 1 0.9127 4.9725 2.0148 49 1 1.4220 7.5926 -0.1531 50 1 3.1918 6.3597 0.9731 51 1 0.2137 2.3194 -0.0009 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13470092_14598394.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:10:59 Heat of formation + Delta-G solvation = -141.532044 kcal Electronic energy + Delta-G solvation = -31144.338884 eV Core-core repulsion = 26784.313260 eV Total energy + Delta-G solvation = -4360.025624 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 351.186 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.98912 -41.10287 -40.56015 -39.20713 -38.51916 -37.47327 -37.19650 -33.90514 -33.17815 -31.43058 -29.85939 -28.58170 -28.34429 -28.31766 -27.40000 -26.61504 -24.23896 -23.59613 -23.20162 -22.00575 -20.84904 -20.61754 -19.36212 -18.84260 -18.15955 -18.04782 -17.60295 -17.52407 -16.86086 -16.81171 -16.56579 -16.21522 -16.05473 -15.88883 -15.81299 -15.40431 -15.03940 -14.78603 -14.57655 -14.39974 -14.17056 -14.05565 -13.60566 -13.49191 -13.45757 -13.30812 -13.19055 -12.96217 -12.94301 -12.77166 -12.66281 -12.63640 -12.39504 -12.32523 -12.16100 -12.14497 -11.86487 -11.76206 -11.68950 -11.42905 -11.31831 -11.15226 -10.69692 -10.34238 -10.20059 -9.47401 -4.87971 -0.51714 0.23243 1.27702 1.39678 1.50216 1.63731 1.98782 2.14815 2.53057 2.74329 3.26253 3.40610 3.47622 3.55721 3.61708 3.69921 3.78050 3.85998 3.93720 3.94762 3.99835 4.05599 4.11497 4.15014 4.21223 4.23234 4.26938 4.32138 4.41476 4.51302 4.52491 4.63820 4.65014 4.69433 4.71918 4.78349 4.79353 4.80658 4.85653 4.91938 4.93899 4.96272 5.02725 5.04312 5.13771 5.18646 5.21447 5.28456 5.35185 5.35761 5.42555 5.53073 6.18542 6.44350 6.44521 6.68583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.314 6.314 3 C 0.175 3.825 4 C -0.184 4.184 5 C 0.507 3.493 6 O -0.527 6.527 7 O -0.347 6.347 8 C 0.080 3.920 9 C -0.099 4.099 10 H 0.121 0.879 11 C -0.128 4.128 12 C 0.061 3.939 13 H 0.107 0.893 14 O -0.384 6.384 15 C 0.097 3.903 16 C -0.177 4.177 17 C -0.140 4.140 18 C -0.173 4.173 19 C -0.147 4.147 20 C -0.009 4.009 21 C -0.167 4.167 22 C -0.035 4.035 23 C -0.091 4.091 24 O -0.545 6.545 25 Si 0.775 3.225 26 C -0.200 4.200 27 H 0.112 0.888 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.084 0.916 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.056 0.944 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.169 0.831 46 H 0.162 0.838 47 H 0.132 0.868 48 H 0.388 0.612 49 H -0.304 1.304 50 H -0.273 1.273 51 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.729 4.955 -1.004 6.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.225 6.225 3 C 0.128 3.872 4 C -0.186 4.186 5 C 0.353 3.647 6 O -0.418 6.418 7 O -0.264 6.264 8 C 0.006 3.994 9 C -0.118 4.118 10 H 0.139 0.861 11 C -0.165 4.165 12 C 0.004 3.996 13 H 0.124 0.876 14 O -0.304 6.304 15 C 0.059 3.941 16 C -0.234 4.234 17 C -0.197 4.197 18 C -0.231 4.231 19 C -0.185 4.185 20 C -0.027 4.027 21 C -0.184 4.184 22 C -0.036 4.036 23 C -0.200 4.200 24 O -0.353 6.353 25 Si 0.679 3.321 26 C -0.218 4.218 27 H 0.130 0.870 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.103 0.897 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.075 0.925 43 H 0.094 0.906 44 H 0.102 0.898 45 H 0.186 0.814 46 H 0.179 0.821 47 H 0.150 0.850 48 H 0.238 0.762 49 H -0.232 1.232 50 H -0.199 1.199 51 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 3.360 4.939 -1.113 6.077 hybrid contribution -0.788 -0.675 1.185 1.575 sum 2.573 4.265 0.072 4.981 Atomic orbital electron populations 1.23442 0.76279 1.05644 1.02720 1.86304 1.23417 1.26259 1.86563 1.19312 0.90867 0.85573 0.91480 1.18657 0.89602 0.92503 1.17843 1.21196 0.81489 0.89344 0.72682 1.90880 1.73323 1.30884 1.46710 1.86499 1.18520 1.37268 1.84141 1.23147 0.90875 0.83076 1.02255 1.22328 0.89925 1.00126 0.99381 0.86133 1.23235 0.96205 0.97133 0.99937 1.23671 0.94256 0.91737 0.89949 0.87578 1.88022 1.33366 1.50014 1.58967 1.21690 0.82960 0.95433 0.94054 1.22448 0.99944 1.02604 0.98394 1.21802 1.01851 0.98144 0.97953 1.22437 1.03149 0.96193 1.01275 1.23593 0.97218 1.01407 0.96253 1.21510 1.01945 0.88867 0.90400 1.21197 0.92589 0.99585 1.05049 1.20526 0.94387 0.95107 0.93585 1.25440 1.02526 1.01768 0.90230 1.86598 1.37049 1.95548 1.16144 0.93836 0.77200 0.72520 0.88498 1.21190 1.01200 0.90516 1.08929 0.86950 0.91268 0.90892 0.91269 0.91896 0.89151 0.89920 0.92342 0.90401 0.91576 0.92534 0.89686 0.92436 0.91734 0.90572 0.92521 0.90569 0.89831 0.81371 0.82079 0.85021 0.76202 1.23242 1.19900 0.83179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.00 9.81 113.37 1.11 1.12 16 2 O -0.31 -2.90 8.57 -68.57 -0.59 -3.49 16 3 C 0.18 1.13 6.70 22.86 0.15 1.28 16 4 C -0.18 -1.13 5.88 -20.02 -0.12 -1.25 16 5 C 0.51 5.27 7.89 70.23 0.55 5.82 16 6 O -0.53 -9.14 14.95 26.79 0.40 -8.74 16 7 O -0.35 -2.01 9.47 -56.64 -0.54 -2.55 16 8 C 0.08 0.31 5.31 71.98 0.38 0.70 16 9 C -0.10 0.11 4.02 -10.27 -0.04 0.07 16 10 H 0.12 -0.46 8.14 -2.38 -0.02 -0.48 16 11 C -0.13 0.09 7.47 31.12 0.23 0.32 16 12 C 0.06 -0.02 2.82 31.12 0.09 0.07 16 13 H 0.11 -0.35 5.54 -2.38 -0.01 -0.36 16 14 O -0.38 -1.61 10.00 -148.98 -1.49 -3.10 16 15 C 0.10 0.04 1.11 -10.79 -0.01 0.02 16 16 C -0.18 0.36 8.38 71.98 0.60 0.97 16 17 C -0.14 -0.01 8.84 71.98 0.64 0.63 16 18 C -0.17 0.30 8.39 71.98 0.60 0.91 16 19 C -0.15 0.04 7.46 31.12 0.23 0.28 16 20 C -0.01 0.01 9.61 22.53 0.22 0.22 16 21 C -0.17 0.62 8.64 22.24 0.19 0.82 16 22 C -0.04 0.07 5.36 -19.83 -0.11 -0.04 16 23 C -0.09 0.34 2.79 71.24 0.20 0.54 16 24 O -0.55 0.24 12.83 -148.98 -1.91 -1.67 16 25 Si 0.78 -4.20 29.86 68.60 2.05 -2.15 16 26 C -0.20 -0.25 8.65 22.34 0.19 -0.06 16 27 H 0.11 -0.19 8.14 -2.38 -0.02 -0.21 16 28 H 0.07 -0.15 7.66 -2.39 -0.02 -0.17 16 29 H 0.07 -0.21 7.66 -2.39 -0.02 -0.23 16 30 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.06 0.38 7.84 -2.39 -0.02 0.37 16 32 H 0.09 -0.28 8.14 -2.39 -0.02 -0.30 16 33 H 0.08 0.15 8.10 -2.39 -0.02 0.14 16 34 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 35 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 36 H 0.07 -0.23 6.24 -2.39 -0.01 -0.24 16 37 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 38 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 39 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 40 H 0.06 -0.18 7.02 -2.39 -0.02 -0.20 16 41 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 42 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 43 H 0.08 0.23 7.89 -2.39 -0.02 0.21 16 44 H 0.08 -0.20 8.14 -2.39 -0.02 -0.21 16 45 H 0.17 -0.89 7.61 -2.91 -0.02 -0.92 16 46 H 0.16 -1.43 4.81 -2.91 -0.01 -1.44 16 47 H 0.13 -0.74 7.96 -2.39 -0.02 -0.76 16 48 H 0.39 -2.32 8.70 -74.05 -0.64 -2.96 16 49 H -0.30 -0.90 7.11 99.48 0.71 -0.19 16 50 H -0.27 0.72 7.00 99.48 0.70 1.41 16 51 H 0.15 -0.17 6.30 -2.91 -0.02 -0.19 16 Total: 0.00 -19.94 409.98 3.36 -16.58 By element: Atomic # 1 Polarization: -7.61 SS G_CDS: 0.31 Total: -7.30 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: 5.12 Total: 12.42 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -4.12 Total: -19.55 kcal Atomic # 14 Polarization: -4.20 SS G_CDS: 2.05 Total: -2.15 kcal Total: -19.94 3.36 -16.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13470092_14598394.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.952 kcal (2) G-P(sol) polarization free energy of solvation -19.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds