Wall clock time and date at job start Sat Mar 6 2021 05:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35644 * 117.00209 * 2 1 4 4 C 1.40194 * 120.15337 * 180.02562 * 3 2 1 5 5 C 1.47394 * 120.19942 * 359.95123 * 4 3 2 6 6 O 1.21507 * 120.00522 * 0.02562 * 5 4 3 7 7 O 1.34758 * 119.99900 * 180.02562 * 5 4 3 8 8 C 1.45202 * 116.99714 * 180.02562 * 7 5 4 9 9 C 1.53006 * 109.46680 * 179.97438 * 8 7 5 10 10 H 1.09000 * 112.84759 * 43.80519 * 9 8 7 11 11 C 1.53781 * 113.61135 * 174.99617 * 9 8 7 12 12 C 1.53782 * 87.08011 * 139.98001 * 11 9 8 13 13 H 1.08994 * 113.61661 * 220.01609 * 12 11 9 14 14 N 1.46508 * 113.61087 * 89.11522 * 12 11 9 15 15 C 1.34776 * 119.99681 * 155.00233 * 14 12 11 16 16 O 1.21506 * 119.99982 * 359.97438 * 15 14 12 17 17 O 1.34634 * 119.99733 * 179.97438 * 15 14 12 18 18 C 1.45197 * 117.00026 * 179.97438 * 17 15 14 19 19 C 1.52998 * 109.46893 * 60.00361 * 18 17 15 20 20 C 1.53002 * 109.47260 * 180.02562 * 18 17 15 21 21 C 1.53000 * 109.47504 * 300.00129 * 18 17 15 22 22 C 1.53772 * 113.61475 * 272.49522 * 9 8 7 23 23 C 1.39773 * 119.60205 * 180.23434 * 4 3 2 24 24 C 1.37768 * 119.89937 * 359.48668 * 23 4 3 25 25 C 1.38558 * 120.30843 * 0.53452 * 24 23 4 26 26 C 1.50707 * 119.79655 * 179.71948 * 25 24 23 27 27 O 1.42903 * 109.46938 * 244.97904 * 26 25 24 28 28 Si 1.86295 * 109.47209 * 4.98060 * 26 25 24 29 29 C 1.38050 * 120.40366 * 359.70296 * 25 24 23 30 30 H 1.08998 * 109.47038 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47018 * 299.99657 * 1 2 3 32 32 H 1.09003 * 109.47400 * 60.00013 * 1 2 3 33 33 H 1.08995 * 109.47676 * 60.00205 * 8 7 5 34 34 H 1.09000 * 109.46969 * 299.99743 * 8 7 5 35 35 H 1.09000 * 113.61578 * 254.52872 * 11 9 8 36 36 H 1.09007 * 113.61310 * 25.35225 * 11 9 8 37 37 H 0.96999 * 119.99876 * 335.00395 * 14 12 11 38 38 H 1.08996 * 109.47290 * 59.99804 * 19 18 17 39 39 H 1.09004 * 109.47413 * 180.02562 * 19 18 17 40 40 H 1.09003 * 109.47431 * 299.99611 * 19 18 17 41 41 H 1.09003 * 109.46860 * 60.00327 * 20 18 17 42 42 H 1.08999 * 109.47197 * 180.02562 * 20 18 17 43 43 H 1.08996 * 109.46941 * 300.00207 * 20 18 17 44 44 H 1.09010 * 109.46621 * 60.00093 * 21 18 17 45 45 H 1.09004 * 109.47453 * 179.97438 * 21 18 17 46 46 H 1.08995 * 109.47681 * 300.00155 * 21 18 17 47 47 H 1.09000 * 113.61922 * 334.57064 * 22 9 8 48 48 H 1.08999 * 113.61689 * 105.47008 * 22 9 8 49 49 H 1.07994 * 120.04636 * 179.72792 * 23 4 3 50 50 H 1.08004 * 119.84403 * 180.25518 * 24 23 4 51 51 H 1.09000 * 109.47047 * 124.98382 * 26 25 24 52 52 H 0.96699 * 113.99910 * 60.00264 * 27 26 25 53 53 H 1.48493 * 110.00211 * 180.02562 * 28 26 25 54 54 H 1.48501 * 110.00103 * 301.31904 * 28 26 25 55 55 H 1.08009 * 119.95522 * 180.02562 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 3.4446 1.2856 -0.0005 5 6 4.2549 0.0544 0.0000 6 8 3.7101 -1.0316 0.0004 7 8 5.6002 0.1332 0.0000 8 6 6.3339 -1.1198 -0.0001 9 6 7.8364 -0.8310 -0.0007 10 1 8.1155 -0.0391 0.6943 11 6 8.7063 -2.0931 0.1221 12 6 9.6476 -1.4493 -0.9096 13 1 10.0394 -2.1541 -1.6429 14 7 10.6895 -0.6113 -0.3108 15 6 11.8452 -0.3985 -0.9707 16 8 12.0232 -0.9021 -2.0621 17 8 12.8025 0.3720 -0.4206 18 6 14.0213 0.5572 -1.1876 19 6 13.6854 1.2134 -2.5283 20 6 14.9838 1.4545 -0.4070 21 6 14.6794 -0.8016 -1.4356 22 6 8.4292 -0.6547 -1.4086 23 6 4.0672 2.5370 0.0044 24 6 3.3039 3.6839 -0.0009 25 6 1.9206 3.6032 0.0000 26 6 1.0968 4.8652 0.0006 27 8 0.3601 4.9525 1.2219 28 14 2.2225 6.3417 -0.1526 29 6 1.2925 2.3739 0.0001 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 6.0741 -1.6930 -0.8900 34 1 6.0741 -1.6930 0.8899 35 1 9.1575 -2.2184 1.1064 36 1 8.2161 -2.9980 -0.2372 37 1 10.5475 -0.2096 0.5607 38 1 13.2166 2.1814 -2.3517 39 1 14.6003 1.3521 -3.1044 40 1 12.9999 0.5738 -3.0843 41 1 15.2231 0.9866 0.5479 42 1 15.8986 1.5939 -0.9830 43 1 14.5153 2.4226 -0.2300 44 1 13.9938 -1.4412 -1.9916 45 1 15.5942 -0.6626 -2.0118 46 1 14.9187 -1.2692 -0.4806 47 1 7.8638 -1.1660 -2.1877 48 1 8.6566 0.3812 -1.6601 49 1 5.1450 2.6048 0.0085 50 1 3.7859 4.6504 -0.0012 51 1 0.4043 4.8473 -0.8409 52 1 0.9136 4.9728 2.0146 53 1 1.4223 7.5926 -0.1526 54 1 3.1923 6.3598 0.9718 55 1 0.2138 2.3194 0.0004 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13470092_15734084.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:40:22 Heat of formation + Delta-G solvation = -173.046556 kcal Electronic energy + Delta-G solvation = -36790.570088 eV Core-core repulsion = 31761.306030 eV Total energy + Delta-G solvation = -5029.264058 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 394.196 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.03346 -41.88171 -40.94697 -40.20593 -39.20215 -38.00254 -37.47963 -37.26542 -35.35624 -34.10524 -33.16073 -31.42562 -29.78763 -28.57427 -28.36415 -28.29773 -27.46955 -26.73744 -24.78018 -23.81060 -23.46150 -23.00257 -21.99191 -21.15745 -20.33464 -19.36785 -19.31325 -18.82404 -18.14181 -17.92878 -17.58712 -17.54720 -17.18971 -16.84886 -16.81640 -16.56011 -16.23109 -16.06024 -15.85033 -15.66988 -15.42133 -15.24043 -15.11514 -14.98057 -14.55223 -14.42979 -14.35487 -13.78662 -13.64348 -13.53653 -13.45495 -13.35289 -13.25584 -13.04058 -12.96814 -12.91372 -12.86465 -12.65538 -12.51499 -12.33854 -12.32835 -12.15372 -12.04942 -11.86567 -11.76642 -11.68794 -11.40658 -11.37750 -11.18021 -11.11826 -10.70034 -10.19988 -10.18706 -9.46908 -4.88648 -0.50808 0.23575 1.12587 1.27337 1.41489 1.54451 1.62855 1.72785 1.98181 2.15384 2.53795 3.10720 3.26237 3.38507 3.42308 3.49202 3.60957 3.69246 3.74390 3.76114 3.81047 3.91011 3.94735 3.95402 4.08051 4.21718 4.24174 4.27848 4.33558 4.38664 4.43498 4.48442 4.52238 4.61570 4.61760 4.64890 4.71779 4.73458 4.75466 4.76945 4.83008 4.88130 4.88645 4.90645 5.00719 5.03471 5.04858 5.07252 5.16793 5.21829 5.27531 5.31138 5.36239 5.48550 5.53137 5.61663 6.19059 6.38174 6.44000 6.71702 7.33287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.313 6.313 3 C 0.176 3.824 4 C -0.185 4.185 5 C 0.508 3.492 6 O -0.526 6.526 7 O -0.350 6.350 8 C 0.075 3.925 9 C -0.101 4.101 10 H 0.114 0.886 11 C -0.122 4.122 12 C 0.133 3.867 13 H 0.096 0.904 14 N -0.683 5.683 15 C 0.646 3.354 16 O -0.593 6.593 17 O -0.369 6.369 18 C 0.128 3.872 19 C -0.180 4.180 20 C -0.138 4.138 21 C -0.181 4.181 22 C -0.144 4.144 23 C -0.010 4.010 24 C -0.168 4.168 25 C -0.036 4.036 26 C -0.091 4.091 27 O -0.545 6.545 28 Si 0.773 3.227 29 C -0.200 4.200 30 H 0.113 0.887 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.112 0.888 37 H 0.417 0.583 38 H 0.062 0.938 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.098 0.902 43 H 0.070 0.930 44 H 0.063 0.937 45 H 0.086 0.914 46 H 0.062 0.938 47 H 0.098 0.902 48 H 0.070 0.930 49 H 0.168 0.832 50 H 0.161 0.839 51 H 0.132 0.868 52 H 0.388 0.612 53 H -0.304 1.304 54 H -0.273 1.273 55 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.670 3.958 0.993 4.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.225 6.225 3 C 0.128 3.872 4 C -0.187 4.187 5 C 0.354 3.646 6 O -0.416 6.416 7 O -0.267 6.267 8 C 0.001 3.999 9 C -0.119 4.119 10 H 0.132 0.868 11 C -0.160 4.160 12 C 0.028 3.972 13 H 0.114 0.886 14 N -0.342 5.342 15 C 0.400 3.600 16 O -0.484 6.484 17 O -0.283 6.283 18 C 0.091 3.909 19 C -0.237 4.237 20 C -0.195 4.195 21 C -0.238 4.238 22 C -0.183 4.183 23 C -0.028 4.028 24 C -0.185 4.185 25 C -0.036 4.036 26 C -0.199 4.199 27 O -0.353 6.353 28 Si 0.678 3.322 29 C -0.219 4.219 30 H 0.131 0.869 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.113 0.887 36 H 0.131 0.869 37 H 0.255 0.745 38 H 0.081 0.919 39 H 0.105 0.895 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.117 0.883 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.105 0.895 46 H 0.081 0.919 47 H 0.116 0.884 48 H 0.089 0.911 49 H 0.185 0.815 50 H 0.178 0.822 51 H 0.150 0.850 52 H 0.238 0.762 53 H -0.232 1.232 54 H -0.200 1.200 55 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 1.577 3.900 0.413 4.227 hybrid contribution -0.880 -0.548 1.353 1.704 sum 0.697 3.353 1.766 3.853 Atomic orbital electron populations 1.23442 0.76289 1.05679 1.02684 1.86300 1.23395 1.26206 1.86567 1.19297 0.90878 0.85541 0.91456 1.18677 0.89637 0.92621 1.17716 1.21118 0.81531 0.89221 0.72720 1.90878 1.73317 1.30750 1.46656 1.86513 1.18439 1.37576 1.84134 1.23260 0.90736 0.83076 1.02780 1.22664 0.90225 1.00170 0.98836 0.86836 1.23337 0.94863 0.97400 1.00426 1.21793 0.85888 0.92637 0.96871 0.88605 1.44347 1.13343 1.53353 1.23157 1.18304 0.81252 0.77830 0.82621 1.90909 1.80841 1.54788 1.21825 1.86309 1.26937 1.64779 1.50296 1.22353 0.80383 0.96707 0.91430 1.22472 1.03841 1.00934 0.96475 1.21892 0.97867 0.98866 1.00850 1.22480 1.02037 0.96400 1.02856 1.23558 0.96161 1.01607 0.96974 1.21499 1.01875 0.88938 0.90453 1.21191 0.92623 0.99595 1.05115 1.20511 0.94357 0.95117 0.93659 1.25424 1.02502 1.01742 0.90230 1.86598 1.37038 1.95546 1.16137 0.93850 0.77208 0.72617 0.88539 1.21190 1.01211 0.90547 1.08926 0.86864 0.91318 0.90944 0.91087 0.90966 0.88670 0.86927 0.74531 0.91852 0.89506 0.91795 0.91183 0.88344 0.91117 0.91790 0.89493 0.91927 0.88382 0.91079 0.81482 0.82224 0.85004 0.76210 1.23236 1.19957 0.83201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 9.81 113.37 1.11 1.11 16 2 O -0.31 -2.58 8.57 -68.67 -0.59 -3.17 16 3 C 0.18 0.99 6.70 22.86 0.15 1.14 16 4 C -0.18 -0.96 5.88 -20.02 -0.12 -1.07 16 5 C 0.51 4.39 7.89 70.23 0.55 4.94 16 6 O -0.53 -7.97 14.95 26.81 0.40 -7.57 16 7 O -0.35 -1.28 9.47 -56.69 -0.54 -1.82 16 8 C 0.07 0.01 5.31 71.98 0.38 0.39 16 9 C -0.10 0.47 3.90 -10.27 -0.04 0.43 16 10 H 0.11 -0.70 8.14 -2.39 -0.02 -0.72 16 11 C -0.12 0.77 7.39 31.12 0.23 1.00 16 12 C 0.13 -0.25 4.32 45.52 0.20 -0.05 16 13 H 0.10 0.17 7.46 -2.39 -0.02 0.15 16 14 N -0.68 0.34 5.27 -567.60 -2.99 -2.65 16 15 C 0.65 3.90 8.06 129.79 1.05 4.95 16 16 O -0.59 -6.88 11.48 19.82 0.23 -6.66 16 17 O -0.37 -1.78 9.94 -55.44 -0.55 -2.33 16 18 C 0.13 0.32 1.13 -10.79 -0.01 0.30 16 19 C -0.18 -0.50 8.37 71.98 0.60 0.10 16 20 C -0.14 0.35 8.85 71.98 0.64 0.99 16 21 C -0.18 -0.53 8.37 71.98 0.60 0.08 16 22 C -0.14 0.37 7.43 31.12 0.23 0.60 16 23 C -0.01 0.01 9.61 22.53 0.22 0.23 16 24 C -0.17 0.66 8.64 22.23 0.19 0.85 16 25 C -0.04 0.08 5.36 -19.83 -0.11 -0.03 16 26 C -0.09 0.35 2.79 71.24 0.20 0.55 16 27 O -0.54 0.32 12.83 -148.98 -1.91 -1.59 16 28 Si 0.77 -4.12 29.86 68.60 2.05 -2.07 16 29 C -0.20 -0.16 8.65 22.34 0.19 0.04 16 30 H 0.11 -0.30 8.14 -2.39 -0.02 -0.32 16 31 H 0.07 -0.19 7.66 -2.39 -0.02 -0.21 16 32 H 0.07 -0.25 7.66 -2.39 -0.02 -0.27 16 33 H 0.07 0.07 7.84 -2.39 -0.02 0.05 16 34 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 35 H 0.09 -0.77 8.14 -2.39 -0.02 -0.79 16 36 H 0.11 -0.84 8.10 -2.38 -0.02 -0.86 16 37 H 0.42 -2.12 8.81 -92.71 -0.82 -2.94 16 38 H 0.06 0.12 8.14 -2.39 -0.02 0.11 16 39 H 0.09 -0.05 8.14 -2.38 -0.02 -0.07 16 40 H 0.06 0.52 5.88 -2.39 -0.01 0.51 16 41 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 42 H 0.10 -0.56 8.14 -2.39 -0.02 -0.58 16 43 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 44 H 0.06 0.53 5.88 -2.38 -0.01 0.51 16 45 H 0.09 -0.04 8.14 -2.38 -0.02 -0.06 16 46 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 47 H 0.10 -0.26 7.89 -2.39 -0.02 -0.28 16 48 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 49 H 0.17 -0.94 7.61 -2.91 -0.02 -0.96 16 50 H 0.16 -1.40 4.81 -2.91 -0.01 -1.41 16 51 H 0.13 -0.75 7.96 -2.39 -0.02 -0.77 16 52 H 0.39 -2.37 8.70 -74.06 -0.64 -3.02 16 53 H -0.30 -0.93 7.11 99.48 0.71 -0.22 16 54 H -0.27 0.68 7.00 99.48 0.70 1.37 16 55 H 0.15 -0.23 6.30 -2.91 -0.02 -0.25 16 Total: 0.00 -24.56 445.22 1.87 -22.69 By element: Atomic # 1 Polarization: -10.88 SS G_CDS: -0.50 Total: -11.39 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: 6.27 Total: 16.55 kcal Atomic # 7 Polarization: 0.34 SS G_CDS: -2.99 Total: -2.65 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -2.96 Total: -23.13 kcal Atomic # 14 Polarization: -4.12 SS G_CDS: 2.05 Total: -2.07 kcal Total: -24.56 1.87 -22.69 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13470092_15734084.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.354 kcal (2) G-P(sol) polarization free energy of solvation -24.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds