Wall clock time and date at job start Sat Mar 6 2021 05:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35631 * 117.00237 * 2 1 4 4 C 1.40200 * 120.15410 * 180.02562 * 3 2 1 5 5 C 1.47392 * 120.20244 * 359.95304 * 4 3 2 6 6 O 1.21517 * 119.99385 * 0.02562 * 5 4 3 7 7 O 1.34752 * 120.00430 * 180.02562 * 5 4 3 8 8 C 1.45203 * 117.00038 * 180.02562 * 7 5 4 9 9 C 1.52994 * 109.46981 * 180.02562 * 8 7 5 10 10 H 1.08994 * 112.85249 * 316.19561 * 9 8 7 11 11 C 1.53783 * 113.61388 * 87.50441 * 9 8 7 12 12 C 1.53783 * 87.08219 * 139.97732 * 11 9 8 13 13 H 1.09008 * 113.68687 * 89.12495 * 12 11 9 14 14 N 1.46499 * 113.61707 * 220.01754 * 12 11 9 15 15 C 1.34777 * 119.99938 * 252.49838 * 14 12 11 16 16 O 1.21509 * 120.00093 * 0.02562 * 15 14 12 17 17 O 1.34633 * 119.99720 * 179.97438 * 15 14 12 18 18 C 1.45199 * 116.99881 * 180.02562 * 17 15 14 19 19 C 1.52997 * 109.47645 * 59.99672 * 18 17 15 20 20 C 1.53002 * 109.47150 * 180.02562 * 18 17 15 21 21 C 1.53001 * 109.46894 * 299.99584 * 18 17 15 22 22 C 1.53781 * 87.08141 * 334.56999 * 12 11 9 23 23 C 1.39779 * 119.60488 * 179.97438 * 4 3 2 24 24 C 1.37771 * 119.89914 * 359.76440 * 23 4 3 25 25 C 1.38563 * 120.30734 * 0.49042 * 24 23 4 26 26 C 1.50693 * 119.79511 * 179.76678 * 25 24 23 27 27 O 1.42907 * 109.47661 * 119.72550 * 26 25 24 28 28 Si 1.86298 * 109.47618 * 359.72240 * 26 25 24 29 29 C 1.38051 * 120.40420 * 359.48198 * 25 24 23 30 30 H 1.09002 * 109.47120 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47029 * 300.00218 * 1 2 3 32 32 H 1.09006 * 109.47151 * 59.99900 * 1 2 3 33 33 H 1.09000 * 109.46748 * 300.00272 * 8 7 5 34 34 H 1.09005 * 109.47080 * 60.00015 * 8 7 5 35 35 H 1.08995 * 113.61433 * 254.52820 * 11 9 8 36 36 H 1.09002 * 113.61333 * 25.43476 * 11 9 8 37 37 H 0.96996 * 119.99678 * 72.50185 * 14 12 11 38 38 H 1.09001 * 109.46936 * 60.00097 * 19 18 17 39 39 H 1.08999 * 109.47337 * 179.97438 * 19 18 17 40 40 H 1.08999 * 109.47276 * 300.00598 * 19 18 17 41 41 H 1.08999 * 109.47158 * 59.99559 * 20 18 17 42 42 H 1.08999 * 109.47393 * 179.97438 * 20 18 17 43 43 H 1.09001 * 109.46852 * 299.99549 * 20 18 17 44 44 H 1.09000 * 109.47117 * 60.00321 * 21 18 17 45 45 H 1.08999 * 109.46959 * 180.02562 * 21 18 17 46 46 H 1.08999 * 109.47358 * 300.00406 * 21 18 17 47 47 H 1.09005 * 113.61038 * 270.88227 * 22 12 11 48 48 H 1.09001 * 113.69082 * 139.98917 * 22 12 11 49 49 H 1.08000 * 120.04746 * 180.02562 * 23 4 3 50 50 H 1.07997 * 119.84336 * 180.23399 * 24 23 4 51 51 H 1.09000 * 109.46936 * 239.72173 * 26 25 24 52 52 H 0.96697 * 114.00527 * 179.97438 * 27 26 25 53 53 H 1.48506 * 109.99834 * 298.68714 * 28 26 25 54 54 H 1.48502 * 110.00011 * 59.99978 * 28 26 25 55 55 H 1.08001 * 119.95318 * 180.25442 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2085 0.0000 4 6 3.4447 1.2855 -0.0005 5 6 4.2551 0.0544 -0.0001 6 8 3.7100 -1.0317 0.0003 7 8 5.6003 0.1331 -0.0001 8 6 6.3340 -1.1199 -0.0002 9 6 7.8364 -0.8311 0.0005 10 1 8.1155 -0.0391 -0.6944 11 6 8.4292 -0.6550 1.4085 12 6 9.6476 -1.4496 0.9094 13 1 10.4237 -0.8272 0.4638 14 7 10.1742 -2.3971 1.8949 15 6 11.3421 -2.1423 2.5175 16 8 11.9580 -1.1266 2.2618 17 8 11.8257 -3.0128 3.4235 18 6 13.0884 -2.6735 4.0551 19 6 12.9460 -1.3436 4.7980 20 6 13.4746 -3.7732 5.0463 21 6 14.1754 -2.5466 2.9859 22 6 8.7063 -2.0933 -0.1224 23 6 4.0673 2.5370 -0.0011 24 6 3.3040 3.6839 -0.0060 25 6 1.9207 3.6032 -0.0002 26 6 1.0970 4.8651 -0.0003 27 8 0.2724 4.8957 -1.1670 28 14 2.2283 6.3452 -0.0004 29 6 1.2926 2.3738 -0.0001 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 6.0741 -1.6931 0.8898 34 1 6.0741 -1.6930 -0.8902 35 1 8.6567 0.3808 1.6600 36 1 7.8637 -1.1665 2.1874 37 1 9.6823 -3.2077 2.0992 38 1 12.1716 -1.4340 5.5597 39 1 13.8938 -1.0892 5.2724 40 1 12.6710 -0.5604 4.0915 41 1 13.5762 -4.7204 4.5166 42 1 14.4227 -3.5187 5.5200 43 1 12.7003 -3.8640 5.8080 44 1 13.9005 -1.7634 2.2794 45 1 15.1234 -2.2923 3.4600 46 1 14.2769 -3.4941 2.4566 47 1 8.2166 -2.9979 0.2381 48 1 9.1564 -2.2192 -1.1071 49 1 5.1452 2.6047 -0.0019 50 1 3.7860 4.6503 -0.0102 51 1 0.4681 4.8885 0.8897 52 1 -0.2867 5.6818 -1.2331 53 1 3.0689 6.3421 1.2238 54 1 3.0911 6.3250 -1.2089 55 1 0.2139 2.3194 0.0003 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13470092_15734238.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:40:27 Heat of formation + Delta-G solvation = -174.541178 kcal Electronic energy + Delta-G solvation = -36574.949982 eV Core-core repulsion = 31545.621112 eV Total energy + Delta-G solvation = -5029.328870 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 394.196 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -42.09120 -41.91212 -41.01135 -40.19885 -39.16376 -38.07682 -37.43024 -37.32570 -35.43928 -34.28149 -33.35053 -31.57668 -29.83755 -28.63708 -28.40168 -28.33410 -27.51415 -26.79693 -24.92615 -23.76441 -23.56750 -22.49557 -22.04447 -21.45247 -20.60620 -19.42103 -19.10274 -18.64224 -18.50714 -18.17623 -17.75772 -17.62084 -17.25865 -17.19092 -16.84080 -16.70652 -16.31696 -16.22900 -15.70719 -15.66647 -15.50847 -15.42548 -14.82991 -14.63922 -14.57407 -14.42779 -14.24339 -13.93532 -13.81773 -13.54913 -13.52509 -13.39391 -13.23317 -13.04727 -12.95068 -12.90942 -12.90149 -12.63762 -12.56836 -12.48742 -12.43594 -12.28109 -12.20986 -12.04916 -11.96285 -11.84399 -11.48423 -11.42844 -11.31968 -11.14122 -10.52903 -10.20168 -10.14830 -9.59938 -4.92059 -0.62851 0.07407 1.11906 1.24188 1.32433 1.47035 1.67945 1.69338 1.98145 2.06482 2.39460 3.09155 3.17118 3.31374 3.36960 3.45218 3.59357 3.63519 3.68976 3.71006 3.75323 3.76906 3.87407 3.91171 4.03254 4.12655 4.14501 4.20949 4.22947 4.26274 4.35780 4.41794 4.47149 4.56905 4.58016 4.59120 4.63592 4.65161 4.71823 4.73114 4.74800 4.78495 4.82521 4.84312 4.85652 4.90618 4.98132 5.04052 5.07489 5.14458 5.23765 5.24817 5.29742 5.35860 5.45609 5.55696 6.10039 6.35649 6.62136 6.87192 7.29710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.309 6.309 3 C 0.183 3.817 4 C -0.187 4.187 5 C 0.511 3.489 6 O -0.520 6.520 7 O -0.352 6.352 8 C 0.078 3.922 9 C -0.100 4.100 10 H 0.115 0.885 11 C -0.146 4.146 12 C 0.137 3.863 13 H 0.110 0.890 14 N -0.691 5.691 15 C 0.643 3.357 16 O -0.594 6.594 17 O -0.370 6.370 18 C 0.126 3.874 19 C -0.180 4.180 20 C -0.138 4.138 21 C -0.180 4.180 22 C -0.121 4.121 23 C -0.011 4.011 24 C -0.190 4.190 25 C -0.006 4.006 26 C -0.087 4.087 27 O -0.561 6.561 28 Si 0.776 3.224 29 C -0.195 4.195 30 H 0.117 0.883 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.417 0.583 38 H 0.060 0.940 39 H 0.087 0.913 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.099 0.901 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.087 0.913 46 H 0.062 0.938 47 H 0.106 0.894 48 H 0.097 0.903 49 H 0.164 0.836 50 H 0.135 0.865 51 H 0.106 0.894 52 H 0.407 0.593 53 H -0.283 1.283 54 H -0.294 1.294 55 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.973 3.431 1.407 5.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.221 6.221 3 C 0.135 3.865 4 C -0.189 4.189 5 C 0.357 3.643 6 O -0.410 6.410 7 O -0.269 6.269 8 C 0.004 3.996 9 C -0.118 4.118 10 H 0.133 0.867 11 C -0.185 4.185 12 C 0.034 3.966 13 H 0.128 0.872 14 N -0.350 5.350 15 C 0.397 3.603 16 O -0.485 6.485 17 O -0.285 6.285 18 C 0.090 3.910 19 C -0.237 4.237 20 C -0.195 4.195 21 C -0.237 4.237 22 C -0.159 4.159 23 C -0.029 4.029 24 C -0.207 4.207 25 C -0.007 4.007 26 C -0.196 4.196 27 O -0.371 6.371 28 Si 0.681 3.319 29 C -0.214 4.214 30 H 0.135 0.865 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.254 0.746 38 H 0.079 0.921 39 H 0.106 0.894 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.117 0.883 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.106 0.894 46 H 0.081 0.919 47 H 0.125 0.875 48 H 0.115 0.885 49 H 0.182 0.818 50 H 0.152 0.848 51 H 0.124 0.876 52 H 0.259 0.741 53 H -0.210 1.210 54 H -0.221 1.221 55 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.550 3.051 1.245 4.167 hybrid contribution -0.395 -0.970 0.150 1.057 sum -2.945 2.082 1.395 3.867 Atomic orbital electron populations 1.23510 0.75918 1.05967 1.02903 1.86302 1.23755 1.25702 1.86315 1.19272 0.90716 0.85749 0.90773 1.18630 0.89963 0.92368 1.17953 1.20961 0.81487 0.89028 0.72828 1.90873 1.73231 1.30407 1.46518 1.86515 1.18470 1.37823 1.84137 1.23236 0.90419 0.82913 1.03002 1.22334 0.90314 1.00414 0.98777 0.86738 1.23619 0.96447 1.01496 0.96961 1.22535 0.94459 0.91040 0.88593 0.87208 1.44776 1.20572 1.26851 1.42758 1.18422 0.82018 0.81418 0.78449 1.90900 1.60581 1.28979 1.68026 1.86314 1.40839 1.48750 1.52583 1.22362 0.79199 0.96806 0.92618 1.22470 1.03736 0.96809 1.00687 1.21892 1.03031 0.96987 0.97558 1.22472 0.98869 1.02938 0.99407 1.23360 0.95017 0.97348 1.00193 1.21397 1.01645 0.89146 0.90662 1.20949 0.93449 0.98724 1.07610 1.19871 0.93309 0.94935 0.92568 1.24955 1.00644 1.01647 0.92391 1.86433 1.59116 1.49906 1.41694 0.94251 0.78749 0.82129 0.76730 1.21235 1.01653 0.90068 1.08415 0.86503 0.90714 0.91097 0.90884 0.90613 0.91003 0.89150 0.74580 0.92056 0.89413 0.91800 0.91152 0.88270 0.91251 0.91775 0.89433 0.91909 0.87540 0.88453 0.81826 0.84762 0.87591 0.74070 1.21049 1.22149 0.82098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.00 9.81 113.37 1.11 1.11 16 2 O -0.31 -2.97 8.57 -68.52 -0.59 -3.56 16 3 C 0.18 1.57 6.70 22.86 0.15 1.72 16 4 C -0.19 -1.71 5.89 -20.02 -0.12 -1.83 16 5 C 0.51 5.75 7.89 70.23 0.55 6.31 16 6 O -0.52 -8.64 14.95 26.78 0.40 -8.24 16 7 O -0.35 -2.29 9.47 -56.62 -0.54 -2.83 16 8 C 0.08 0.15 5.31 71.98 0.38 0.53 16 9 C -0.10 0.25 4.02 -10.27 -0.04 0.20 16 10 H 0.11 -0.34 8.14 -2.39 -0.02 -0.36 16 11 C -0.15 0.12 7.43 31.12 0.23 0.35 16 12 C 0.14 -0.09 4.24 45.52 0.19 0.10 16 13 H 0.11 0.26 7.46 -2.38 -0.02 0.25 16 14 N -0.69 -0.74 5.36 -567.60 -3.04 -3.78 16 15 C 0.64 4.83 8.06 129.79 1.05 5.87 16 16 O -0.59 -7.57 11.48 19.81 0.23 -7.34 16 17 O -0.37 -2.36 9.94 -55.43 -0.55 -2.91 16 18 C 0.13 0.47 1.13 -10.79 -0.01 0.46 16 19 C -0.18 -0.74 8.37 71.98 0.60 -0.14 16 20 C -0.14 0.19 8.85 71.98 0.64 0.82 16 21 C -0.18 -0.69 8.37 71.98 0.60 -0.09 16 22 C -0.12 0.62 7.39 31.12 0.23 0.85 16 23 C -0.01 -0.05 9.61 22.53 0.22 0.17 16 24 C -0.19 -0.77 8.64 22.24 0.19 -0.58 16 25 C -0.01 -0.02 5.43 -19.83 -0.11 -0.13 16 26 C -0.09 0.29 2.80 71.23 0.20 0.49 16 27 O -0.56 1.83 12.74 -148.98 -1.90 -0.07 16 28 Si 0.78 -3.43 29.77 68.60 2.04 -1.39 16 29 C -0.20 -0.80 8.58 22.34 0.19 -0.61 16 30 H 0.12 -0.32 8.14 -2.39 -0.02 -0.34 16 31 H 0.07 -0.26 7.66 -2.39 -0.02 -0.28 16 32 H 0.07 -0.16 7.66 -2.38 -0.02 -0.18 16 33 H 0.07 0.15 7.84 -2.39 -0.02 0.13 16 34 H 0.08 0.15 8.14 -2.38 -0.02 0.13 16 35 H 0.07 0.09 8.14 -2.39 -0.02 0.07 16 36 H 0.09 -0.08 7.89 -2.39 -0.02 -0.10 16 37 H 0.42 -1.43 8.84 -92.71 -0.82 -2.25 16 38 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 39 H 0.09 0.04 8.14 -2.39 -0.02 0.03 16 40 H 0.06 0.60 5.88 -2.39 -0.01 0.59 16 41 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 42 H 0.10 -0.47 8.14 -2.39 -0.02 -0.49 16 43 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 44 H 0.06 0.58 5.88 -2.39 -0.01 0.57 16 45 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 46 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 47 H 0.11 -0.78 8.08 -2.38 -0.02 -0.80 16 48 H 0.10 -0.63 8.14 -2.39 -0.02 -0.65 16 49 H 0.16 0.13 7.61 -2.91 -0.02 0.11 16 50 H 0.14 0.28 4.85 -2.91 -0.01 0.26 16 51 H 0.11 -0.86 7.96 -2.39 -0.02 -0.87 16 52 H 0.41 -5.64 8.74 -74.06 -0.65 -6.29 16 53 H -0.28 -0.22 7.11 99.48 0.71 0.49 16 54 H -0.29 -0.96 7.11 99.48 0.71 -0.25 16 55 H 0.16 -0.04 6.30 -2.91 -0.02 -0.06 16 Total: 0.00 -26.50 445.38 1.82 -24.67 By element: Atomic # 1 Polarization: -9.67 SS G_CDS: -0.50 Total: -10.17 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: 6.27 Total: 15.61 kcal Atomic # 7 Polarization: -0.74 SS G_CDS: -3.04 Total: -3.78 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -2.94 Total: -24.94 kcal Atomic # 14 Polarization: -3.43 SS G_CDS: 2.04 Total: -1.39 kcal Total: -26.50 1.82 -24.67 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13470092_15734238.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.867 kcal (2) G-P(sol) polarization free energy of solvation -26.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds