Wall clock time and date at job start Sat Mar 6 2021 06:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35632 * 117.00120 * 2 1 4 4 C 1.40200 * 120.15200 * 179.97438 * 3 2 1 5 5 C 1.47396 * 120.19580 * 0.02562 * 4 3 2 6 6 O 1.21502 * 120.00457 * 359.71793 * 5 4 3 7 7 O 1.34751 * 119.99639 * 179.71960 * 5 4 3 8 8 C 1.45206 * 116.99894 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47091 * 179.97438 * 8 7 5 10 10 H 1.09002 * 109.46615 * 55.00356 * 9 8 7 11 11 C 1.53001 * 109.46964 * 174.99967 * 9 8 7 12 12 C 1.52997 * 109.47049 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47060 * 300.00176 * 12 11 9 14 14 H 1.08998 * 109.46849 * 299.99880 * 13 12 11 15 15 O 1.42903 * 109.47193 * 180.02562 * 13 12 11 16 16 C 1.52992 * 109.47355 * 59.99980 * 13 12 11 17 17 C 1.53000 * 109.47379 * 295.00286 * 9 8 7 18 18 C 1.39768 * 119.60342 * 179.72274 * 4 3 2 19 19 C 1.37763 * 119.90414 * 0.26201 * 18 4 3 20 20 C 1.38567 * 120.30928 * 359.97438 * 19 18 4 21 21 C 1.50698 * 119.80129 * 180.02562 * 20 19 18 22 22 O 1.42901 * 109.47395 * 245.00436 * 21 20 19 23 23 Si 1.86308 * 109.46801 * 5.00358 * 21 20 19 24 24 C 1.38053 * 120.40154 * 0.03145 * 20 19 18 25 25 H 1.08998 * 109.46857 * 299.99837 * 1 2 3 26 26 H 1.09000 * 109.46768 * 59.99663 * 1 2 3 27 27 H 1.08993 * 109.47398 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47157 * 299.99725 * 8 7 5 29 29 H 1.09004 * 109.47122 * 59.99858 * 8 7 5 30 30 H 1.09008 * 109.47105 * 300.00155 * 11 9 8 31 31 H 1.08998 * 109.47250 * 60.00220 * 11 9 8 32 32 H 1.08998 * 109.47192 * 59.99845 * 12 11 9 33 33 H 1.09000 * 109.47325 * 179.97438 * 12 11 9 34 34 H 0.96699 * 114.00121 * 179.97438 * 15 13 12 35 35 H 1.08998 * 109.47224 * 60.00129 * 16 13 12 36 36 H 1.08998 * 109.47273 * 180.02562 * 16 13 12 37 37 H 1.09006 * 109.46717 * 300.00085 * 17 9 8 38 38 H 1.09000 * 109.47227 * 59.99633 * 17 9 8 39 39 H 1.08001 * 120.05280 * 180.23233 * 18 4 3 40 40 H 1.08009 * 119.84772 * 180.02562 * 19 18 4 41 41 H 1.08996 * 109.47334 * 125.00056 * 21 20 19 42 42 H 0.96704 * 113.99741 * 59.99977 * 22 21 20 43 43 H 1.48507 * 109.99665 * 179.97438 * 23 21 20 44 44 H 1.48496 * 110.00050 * 301.31438 * 23 21 20 45 45 H 1.08003 * 119.95668 * 179.97438 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2085 0.0000 4 6 3.4447 1.2855 0.0005 5 6 4.2550 0.0542 0.0005 6 8 3.7100 -1.0317 0.0053 7 8 5.6002 0.1330 -0.0046 8 6 6.3339 -1.1201 -0.0037 9 6 7.8364 -0.8313 -0.0107 10 1 8.0853 -0.1813 0.8281 11 6 8.6089 -2.1459 0.1159 12 6 10.1113 -1.8571 0.1096 13 6 10.4923 -1.1660 -1.2012 14 1 10.2436 -1.8158 -2.0402 15 8 11.8957 -0.8968 -1.2074 16 6 9.7198 0.1485 -1.3279 17 6 8.2169 -0.1404 -1.3218 18 6 4.0673 2.5369 -0.0053 19 6 3.3041 3.6838 -0.0062 20 6 1.9208 3.6032 -0.0017 21 6 1.0971 4.8651 -0.0033 22 8 0.3637 4.9568 1.2198 23 14 2.2225 6.3411 -0.1646 24 6 1.2926 2.3739 0.0042 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 6.0773 -1.6907 0.8889 29 1 6.0707 -1.6958 -0.8911 30 1 8.3378 -2.6381 1.0500 31 1 8.3599 -2.7959 -0.7228 32 1 10.3600 -1.2073 0.9485 33 1 10.6617 -2.7936 0.2003 34 1 12.2086 -0.4586 -2.0107 35 1 9.9684 0.7984 -0.4889 36 1 9.9908 0.6407 -2.2619 37 1 7.9678 -0.7905 -2.1606 38 1 7.6665 0.7961 -1.4120 39 1 5.1452 2.6047 -0.0088 40 1 3.7862 4.6503 -0.0111 41 1 0.4023 4.8445 -0.8428 42 1 0.9194 4.9797 2.0108 43 1 1.4222 7.5920 -0.1680 44 1 3.1953 6.3630 0.9571 45 1 0.2140 2.3195 0.0081 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13470092_16737258.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 06:06:29 Heat of formation + Delta-G solvation = -184.689740 kcal Electronic energy + Delta-G solvation = -27540.144213 eV Core-core repulsion = 23489.322369 eV Total energy + Delta-G solvation = -4050.821844 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.154 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.97971 -40.93346 -39.95226 -39.20518 -37.72498 -37.44498 -36.50701 -33.23850 -31.82391 -31.79902 -31.42182 -28.57986 -27.92465 -26.36424 -23.98208 -23.69255 -23.42461 -22.31165 -21.89638 -20.86197 -19.39671 -18.83326 -18.18869 -18.14692 -17.85650 -17.57587 -16.84382 -16.83159 -16.43467 -16.21190 -15.95479 -15.75563 -15.47871 -15.21486 -15.07421 -14.73877 -14.42049 -14.31665 -13.97975 -13.69178 -13.58488 -13.43347 -13.19211 -13.10923 -12.95050 -12.65932 -12.53401 -12.32480 -12.15804 -12.11225 -11.87812 -11.69949 -11.67732 -11.55429 -11.41288 -11.07734 -10.70193 -10.68441 -10.19813 -9.47207 -4.88677 -0.51293 0.23320 1.27402 1.40603 1.52586 1.63343 1.98493 2.14958 2.53383 3.21520 3.27903 3.44825 3.56943 3.64743 3.67422 3.75664 3.83287 3.94927 4.05325 4.06593 4.18297 4.23268 4.27332 4.28394 4.32628 4.37065 4.39586 4.49850 4.50163 4.51712 4.58994 4.64305 4.71784 4.83466 4.92277 4.97968 5.03564 5.07404 5.10757 5.17138 5.19797 5.21566 5.31734 5.35343 5.47433 5.52960 6.18675 6.43877 6.70110 6.88638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.313 6.313 3 C 0.176 3.824 4 C -0.184 4.184 5 C 0.508 3.492 6 O -0.526 6.526 7 O -0.348 6.348 8 C 0.072 3.928 9 C -0.080 4.080 10 H 0.085 0.915 11 C -0.107 4.107 12 C -0.112 4.112 13 C 0.099 3.901 14 H 0.060 0.940 15 O -0.590 6.590 16 C -0.144 4.144 17 C -0.109 4.109 18 C -0.010 4.010 19 C -0.167 4.167 20 C -0.036 4.036 21 C -0.091 4.091 22 O -0.545 6.545 23 Si 0.774 3.226 24 C -0.200 4.200 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.112 0.888 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.393 0.607 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.168 0.832 40 H 0.161 0.839 41 H 0.132 0.868 42 H 0.388 0.612 43 H -0.304 1.304 44 H -0.274 1.274 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.886 3.673 -3.040 4.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.225 6.225 3 C 0.128 3.872 4 C -0.186 4.186 5 C 0.354 3.646 6 O -0.417 6.417 7 O -0.265 6.265 8 C -0.002 4.002 9 C -0.099 4.099 10 H 0.104 0.896 11 C -0.144 4.144 12 C -0.149 4.149 13 C 0.041 3.959 14 H 0.078 0.922 15 O -0.399 6.399 16 C -0.182 4.182 17 C -0.147 4.147 18 C -0.027 4.027 19 C -0.185 4.185 20 C -0.036 4.036 21 C -0.199 4.199 22 O -0.353 6.353 23 Si 0.679 3.321 24 C -0.218 4.218 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.131 0.869 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.243 0.757 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.186 0.814 40 H 0.178 0.822 41 H 0.150 0.850 42 H 0.238 0.762 43 H -0.232 1.232 44 H -0.200 1.200 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.571 3.543 -2.502 4.375 hybrid contribution -0.721 -0.450 0.709 1.106 sum -0.149 3.093 -1.793 3.578 Atomic orbital electron populations 1.23441 0.76282 1.05650 1.02705 1.86302 1.23404 1.26230 1.86563 1.19305 0.90879 0.85552 0.91476 1.18657 0.89598 0.92537 1.17761 1.21145 0.81478 0.89278 0.72713 1.90877 1.73305 1.30818 1.46657 1.86490 1.18483 1.37334 1.84144 1.23244 0.91283 0.83081 1.02582 1.21212 0.90115 0.98396 1.00157 0.89648 1.21444 0.93356 0.96074 1.03535 1.21439 0.95574 1.00905 0.96997 1.21915 0.80318 0.95611 0.98069 0.92209 1.86480 1.23876 1.82896 1.46644 1.22207 0.95296 0.97651 1.03065 1.21524 0.95368 1.01372 0.96441 1.21499 1.01893 0.88908 0.90448 1.21196 0.92609 0.99595 1.05078 1.20516 0.94367 0.95108 0.93629 1.25431 1.02564 1.01734 0.90183 1.86599 1.37069 1.95511 1.16158 0.93861 0.77139 0.72607 0.88509 1.21190 1.01209 0.90532 1.08919 0.91334 0.90876 0.86922 0.91445 0.91254 0.90332 0.90713 0.91661 0.91365 0.75698 0.91558 0.90409 0.91488 0.90580 0.81447 0.82170 0.84987 0.76212 1.23230 1.20018 0.83195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 9.81 113.37 1.11 1.11 16 2 O -0.31 -2.64 8.57 -68.53 -0.59 -3.23 16 3 C 0.18 1.00 6.70 22.86 0.15 1.15 16 4 C -0.18 -0.97 5.89 -20.02 -0.12 -1.09 16 5 C 0.51 4.62 7.89 70.23 0.55 5.17 16 6 O -0.53 -8.32 14.95 26.83 0.40 -7.92 16 7 O -0.35 -1.52 9.01 -56.62 -0.51 -2.03 16 8 C 0.07 0.14 4.85 71.98 0.35 0.49 16 9 C -0.08 0.15 2.43 -10.79 -0.03 0.12 16 10 H 0.09 -0.13 8.14 -2.39 -0.02 -0.15 16 11 C -0.11 0.27 5.20 30.59 0.16 0.43 16 12 C -0.11 0.04 5.57 30.59 0.17 0.21 16 13 C 0.10 -0.09 3.47 30.59 0.11 0.01 16 14 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 15 O -0.59 -0.99 13.32 -148.98 -1.98 -2.98 16 16 C -0.14 0.45 5.55 30.61 0.17 0.62 16 17 C -0.11 0.32 5.11 30.61 0.16 0.48 16 18 C -0.01 0.01 9.61 22.53 0.22 0.23 16 19 C -0.17 0.68 8.64 22.24 0.19 0.87 16 20 C -0.04 0.08 5.36 -19.83 -0.11 -0.02 16 21 C -0.09 0.36 2.79 71.24 0.20 0.56 16 22 O -0.55 0.33 12.83 -148.98 -1.91 -1.58 16 23 Si 0.77 -4.26 29.86 68.60 2.05 -2.21 16 24 C -0.20 -0.15 8.65 22.34 0.19 0.04 16 25 H 0.07 -0.18 7.65 -2.39 -0.02 -0.20 16 26 H 0.07 -0.26 7.67 -2.39 -0.02 -0.27 16 27 H 0.11 -0.27 8.14 -2.39 -0.02 -0.29 16 28 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 29 H 0.07 0.18 8.14 -2.38 -0.02 0.17 16 30 H 0.08 -0.25 8.14 -2.38 -0.02 -0.27 16 31 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 32 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 33 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 34 H 0.39 -2.46 9.08 -74.06 -0.67 -3.13 16 35 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 36 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 37 H 0.07 -0.20 8.14 -2.38 -0.02 -0.22 16 38 H 0.08 -0.21 7.82 -2.39 -0.02 -0.23 16 39 H 0.17 -0.96 7.61 -2.91 -0.02 -0.98 16 40 H 0.16 -1.44 4.81 -2.91 -0.01 -1.45 16 41 H 0.13 -0.78 7.96 -2.39 -0.02 -0.80 16 42 H 0.39 -2.35 8.70 -74.05 -0.64 -2.99 16 43 H -0.30 -0.88 7.11 99.48 0.71 -0.17 16 44 H -0.27 0.69 7.00 99.48 0.70 1.39 16 45 H 0.15 -0.23 6.30 -2.91 -0.02 -0.25 16 Total: 0.00 -20.75 365.48 0.66 -20.08 By element: Atomic # 1 Polarization: -10.27 SS G_CDS: -0.28 Total: -10.54 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: 3.48 Total: 10.40 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: -4.59 Total: -17.74 kcal Atomic # 14 Polarization: -4.26 SS G_CDS: 2.05 Total: -2.21 kcal Total: -20.75 0.66 -20.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13470092_16737258.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.605 kcal (2) G-P(sol) polarization free energy of solvation -20.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds