Wall clock time and date at job start Sat Mar 6 2021 03:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35641 * 116.99915 * 2 1 4 4 C 1.40195 * 120.15347 * 179.97438 * 3 2 1 5 5 C 1.47395 * 120.19691 * 359.95947 * 4 3 2 6 6 O 1.21514 * 120.00183 * 359.97438 * 5 4 3 7 7 O 1.34752 * 120.00189 * 179.97438 * 5 4 3 8 8 C 1.45201 * 117.00270 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.46950 * 180.02562 * 8 7 5 10 10 H 1.09000 * 112.91223 * 43.74661 * 9 8 7 11 11 C 1.53788 * 113.61258 * 175.00180 * 9 8 7 12 12 C 1.53780 * 87.17276 * 89.07238 * 11 9 8 13 13 O 1.42906 * 113.61476 * 270.92461 * 12 11 9 14 14 C 1.42898 * 113.99825 * 294.70428 * 13 12 11 15 15 C 1.52997 * 113.61365 * 140.02423 * 12 11 9 16 16 F 1.39902 * 109.47331 * 54.77576 * 15 12 11 17 17 F 1.39905 * 109.47281 * 174.77511 * 15 12 11 18 18 F 1.39899 * 109.47368 * 294.77353 * 15 12 11 19 19 C 1.53786 * 113.61050 * 272.49640 * 9 8 7 20 20 C 1.39770 * 119.60406 * 180.23084 * 4 3 2 21 21 C 1.37761 * 119.90055 * 359.44743 * 20 4 3 22 22 C 1.38566 * 120.31095 * 0.58425 * 21 20 4 23 23 C 1.50694 * 119.79831 * 179.71883 * 22 21 20 24 24 O 1.42906 * 109.46883 * 244.97198 * 23 22 21 25 25 Si 1.86302 * 109.47391 * 4.97103 * 23 22 21 26 26 C 1.38050 * 120.39932 * 359.68766 * 22 21 20 27 27 H 1.09003 * 109.47000 * 300.00107 * 1 2 3 28 28 H 1.08996 * 109.47042 * 59.99664 * 1 2 3 29 29 H 1.08995 * 109.47051 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46721 * 60.00060 * 8 7 5 31 31 H 1.08996 * 109.46861 * 300.00135 * 8 7 5 32 32 H 1.08999 * 113.61115 * 203.66074 * 11 9 8 33 33 H 1.08998 * 113.61148 * 334.47752 * 11 9 8 34 34 H 1.09001 * 109.47107 * 177.13427 * 14 13 12 35 35 H 1.08995 * 109.47184 * 297.13981 * 14 13 12 36 36 H 1.09006 * 109.47107 * 57.13958 * 14 13 12 37 37 H 1.08987 * 113.61739 * 25.43381 * 19 9 8 38 38 H 1.09000 * 113.61087 * 156.33880 * 19 9 8 39 39 H 1.08000 * 120.05009 * 179.75326 * 20 4 3 40 40 H 1.08007 * 119.84444 * 180.29402 * 21 20 4 41 41 H 1.09006 * 109.47396 * 124.97389 * 23 22 21 42 42 H 0.96700 * 113.99867 * 179.97438 * 24 23 22 43 43 H 1.48500 * 109.99896 * 178.68020 * 25 23 22 44 44 H 1.48493 * 109.99955 * 300.00332 * 25 23 22 45 45 H 1.08002 * 119.95124 * 180.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 3.4446 1.2857 0.0005 5 6 4.2549 0.0545 0.0020 6 8 3.7100 -1.0316 0.0032 7 8 5.6002 0.1332 0.0020 8 6 6.3339 -1.1198 0.0041 9 6 7.8364 -0.8309 0.0044 10 1 8.1158 -0.0376 0.6977 11 6 8.7062 -2.0929 0.1293 12 6 8.6688 -2.1782 -1.4057 13 8 7.5633 -2.9301 -1.9104 14 6 7.5980 -4.3166 -1.5667 15 6 10.0037 -2.5905 -2.0293 16 9 10.4313 -3.7955 -1.4615 17 9 9.8424 -2.7564 -3.4090 18 9 10.9581 -1.5966 -1.7876 19 6 8.4303 -0.6563 -1.4033 20 6 4.0672 2.5371 0.0054 21 6 3.3039 3.6839 -0.0018 22 6 1.9206 3.6033 -0.0018 23 6 1.0969 4.8652 -0.0034 24 8 0.3591 4.9539 1.2173 25 14 2.2227 6.3415 -0.1573 26 6 1.2925 2.3739 -0.0010 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 6.0741 -1.6943 -0.8850 31 1 6.0740 -1.6915 0.8949 32 1 9.7006 -1.8997 0.5317 33 1 8.2028 -2.9228 0.6252 34 1 6.7002 -4.8069 -1.9431 35 1 8.4787 -4.7794 -2.0120 36 1 7.6416 -4.4212 -0.4825 37 1 7.7038 -0.3270 -2.1460 38 1 9.3493 -0.0704 -1.4199 39 1 5.1450 2.6049 0.0099 40 1 3.7859 4.6504 -0.0029 41 1 0.4050 4.8464 -0.8455 42 1 -0.1945 5.7438 1.2857 43 1 1.4203 7.5906 -0.1921 44 1 3.1708 6.3785 0.9849 45 1 0.2138 2.3195 -0.0013 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13470092_17321610.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 03:55:04 Heat of formation + Delta-G solvation = -272.285060 kcal Electronic energy + Delta-G solvation = -35565.574014 eV Core-core repulsion = 30102.591825 eV Total energy + Delta-G solvation = -5462.982189 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 377.126 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -51.24278 -48.77344 -48.71617 -42.01003 -41.43685 -40.55568 -39.09515 -37.71823 -37.47937 -36.81955 -33.29607 -31.41495 -30.71540 -28.57742 -28.32710 -27.93187 -26.89413 -26.72640 -23.83364 -23.48831 -23.16874 -21.95070 -20.66257 -19.80938 -19.53726 -19.29063 -19.17739 -18.60680 -18.48572 -17.96094 -17.55821 -17.17355 -17.11311 -16.73421 -16.50002 -16.23924 -15.89528 -15.83894 -15.65291 -15.59708 -15.57822 -15.21284 -15.09672 -14.90835 -14.83506 -14.71553 -14.55496 -14.22312 -14.08422 -14.02217 -13.76333 -13.51950 -13.26055 -13.12473 -12.90647 -12.76442 -12.71277 -12.41250 -12.31746 -12.10764 -12.01349 -11.76410 -11.64548 -11.64277 -11.42074 -10.79982 -10.57772 -10.13834 -9.45043 -4.87927 -0.48986 0.25460 1.27584 1.42573 1.49331 1.54351 1.64767 1.98251 2.09602 2.16463 2.52963 2.57420 2.63924 2.89653 3.20352 3.31365 3.31684 3.45873 3.56763 3.67443 3.70649 3.86253 4.03313 4.09348 4.20597 4.21540 4.24465 4.27937 4.28615 4.34929 4.38610 4.45307 4.49550 4.53468 4.63009 4.65025 4.70693 4.72669 4.78257 4.85276 4.92165 5.02586 5.08203 5.25591 5.36600 5.54294 5.71531 6.20087 6.55994 6.72337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.312 6.312 3 C 0.176 3.824 4 C -0.185 4.185 5 C 0.510 3.490 6 O -0.524 6.524 7 O -0.346 6.346 8 C 0.078 3.922 9 C -0.091 4.091 10 H 0.127 0.873 11 C -0.136 4.136 12 C 0.030 3.970 13 O -0.348 6.348 14 C 0.006 3.994 15 C 0.434 3.566 16 F -0.185 7.185 17 F -0.188 7.188 18 F -0.174 7.174 19 C -0.110 4.110 20 C -0.009 4.009 21 C -0.169 4.169 22 C -0.001 4.001 23 C -0.095 4.095 24 O -0.556 6.556 25 Si 0.771 3.229 26 C -0.201 4.201 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.113 0.887 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.130 0.870 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.048 0.952 36 H 0.068 0.932 37 H 0.091 0.909 38 H 0.133 0.867 39 H 0.173 0.827 40 H 0.159 0.841 41 H 0.104 0.896 42 H 0.398 0.602 43 H -0.287 1.287 44 H -0.290 1.290 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.045 5.101 -0.116 5.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.224 6.224 3 C 0.128 3.872 4 C -0.186 4.186 5 C 0.356 3.644 6 O -0.414 6.414 7 O -0.263 6.263 8 C 0.004 3.996 9 C -0.109 4.109 10 H 0.145 0.855 11 C -0.173 4.173 12 C -0.013 4.013 13 O -0.266 6.266 14 C -0.089 4.089 15 C 0.380 3.620 16 F -0.167 7.167 17 F -0.170 7.170 18 F -0.155 7.155 19 C -0.146 4.146 20 C -0.027 4.027 21 C -0.187 4.187 22 C -0.002 4.002 23 C -0.203 4.203 24 O -0.367 6.367 25 Si 0.675 3.325 26 C -0.220 4.220 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.132 0.868 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.148 0.852 33 H 0.118 0.882 34 H 0.126 0.874 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.110 0.890 38 H 0.151 0.849 39 H 0.190 0.810 40 H 0.176 0.824 41 H 0.121 0.879 42 H 0.249 0.751 43 H -0.214 1.214 44 H -0.217 1.217 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -0.663 4.769 0.220 4.820 hybrid contribution -1.001 -0.663 0.559 1.324 sum -1.664 4.106 0.779 4.498 Atomic orbital electron populations 1.23443 0.76317 1.05669 1.02666 1.86300 1.23404 1.26110 1.86591 1.19279 0.90915 0.85501 0.91491 1.18647 0.89590 0.92560 1.17852 1.21071 0.81377 0.89210 0.72751 1.90878 1.73259 1.30728 1.46570 1.86455 1.18533 1.37129 1.84222 1.23054 0.90105 0.83133 1.03278 1.22038 0.90675 0.99707 0.98460 0.85547 1.23654 1.03302 0.99235 0.91083 1.24324 0.82789 0.97390 0.96782 1.88086 1.40779 1.21864 1.75913 1.23242 1.03877 0.80058 1.01751 1.21459 0.88893 0.74927 0.76734 1.93181 1.91665 1.47150 1.84678 1.93189 1.95735 1.95366 1.32682 1.93172 1.67001 1.61278 1.94044 1.23406 1.04345 0.88587 0.98307 1.21509 1.02019 0.88748 0.90384 1.21150 0.92538 0.99676 1.05307 1.19626 0.93832 0.93717 0.92979 1.25172 1.01541 1.03637 0.89986 1.86541 1.62838 1.49095 1.38215 0.93934 0.78748 0.72587 0.87215 1.21185 1.01245 0.90555 1.09011 0.91485 0.90790 0.86834 0.90479 0.90944 0.85217 0.88157 0.87432 0.93370 0.91342 0.89006 0.84933 0.81007 0.82398 0.87855 0.75068 1.21390 1.21750 0.83113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.00 9.81 113.37 1.11 1.12 16 2 O -0.31 -2.93 8.57 -68.62 -0.59 -3.52 16 3 C 0.18 1.27 6.70 22.86 0.15 1.42 16 4 C -0.18 -1.22 5.88 -20.02 -0.12 -1.34 16 5 C 0.51 5.02 7.89 70.23 0.55 5.58 16 6 O -0.52 -8.59 14.95 26.79 0.40 -8.19 16 7 O -0.35 -1.59 9.47 -56.63 -0.54 -2.13 16 8 C 0.08 0.16 5.06 71.98 0.36 0.53 16 9 C -0.09 0.36 4.21 -10.26 -0.04 0.32 16 10 H 0.13 -0.92 8.14 -2.39 -0.02 -0.94 16 11 C -0.14 0.65 6.50 31.12 0.20 0.86 16 12 C 0.03 -0.01 0.85 -10.18 -0.01 -0.01 16 13 O -0.35 -1.08 8.36 -148.98 -1.25 -2.33 16 14 C 0.01 0.00 10.34 113.37 1.17 1.17 16 15 C 0.43 1.19 2.52 71.98 0.18 1.37 16 16 F -0.19 -0.64 15.38 44.97 0.69 0.05 16 17 F -0.19 -1.31 17.10 44.97 0.77 -0.54 16 18 F -0.17 -0.32 15.83 44.97 0.71 0.39 16 19 C -0.11 0.33 6.90 31.22 0.22 0.54 16 20 C -0.01 0.00 9.61 22.53 0.22 0.21 16 21 C -0.17 0.25 8.64 22.23 0.19 0.44 16 22 C 0.00 0.00 5.39 -19.83 -0.11 -0.11 16 23 C -0.10 0.35 2.78 71.23 0.20 0.54 16 24 O -0.56 0.42 12.81 -148.98 -1.91 -1.49 16 25 Si 0.77 -4.06 29.83 68.60 2.05 -2.01 16 26 C -0.20 -0.54 8.65 22.34 0.19 -0.35 16 27 H 0.07 -0.11 7.66 -2.39 -0.02 -0.13 16 28 H 0.07 -0.24 7.66 -2.39 -0.02 -0.25 16 29 H 0.11 -0.23 8.14 -2.39 -0.02 -0.25 16 30 H 0.08 0.42 6.12 -2.39 -0.01 0.40 16 31 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 32 H 0.13 -1.02 8.06 -2.39 -0.02 -1.04 16 33 H 0.10 -0.56 6.64 -2.39 -0.02 -0.58 16 34 H 0.11 -0.21 8.14 -2.39 -0.02 -0.23 16 35 H 0.05 0.03 6.59 -2.39 -0.02 0.01 16 36 H 0.07 -0.23 6.60 -2.38 -0.02 -0.25 16 37 H 0.09 -0.11 8.10 -2.39 -0.02 -0.13 16 38 H 0.13 -0.82 7.02 -2.39 -0.02 -0.83 16 39 H 0.17 -0.85 7.61 -2.91 -0.02 -0.88 16 40 H 0.16 -0.99 4.83 -2.91 -0.01 -1.00 16 41 H 0.10 -0.82 7.96 -2.38 -0.02 -0.84 16 42 H 0.40 -3.50 8.74 -74.06 -0.65 -4.14 16 43 H -0.29 0.21 7.11 99.48 0.71 0.92 16 44 H -0.29 -0.37 7.04 99.48 0.70 0.33 16 45 H 0.15 -0.06 6.30 -2.91 -0.02 -0.08 16 Total: 0.00 -22.51 380.66 5.28 -17.23 By element: Atomic # 1 Polarization: -10.20 SS G_CDS: 0.46 Total: -9.74 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: 4.48 Total: 12.28 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -3.88 Total: -17.65 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 2.17 Total: -0.10 kcal Atomic # 14 Polarization: -4.06 SS G_CDS: 2.05 Total: -2.01 kcal Total: -22.51 5.28 -17.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13470092_17321610.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -255.053 kcal (2) G-P(sol) polarization free energy of solvation -22.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -277.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -272.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds