Wall clock time and date at job start Sat Mar 6 2021 04:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35638 * 117.00396 * 2 1 4 4 C 1.38674 * 120.15037 * 359.72881 * 3 2 1 5 5 C 1.38092 * 120.08344 * 179.71817 * 4 3 2 6 6 C 1.50701 * 119.79663 * 180.27893 * 5 4 3 7 7 O 1.42907 * 109.47133 * 300.27580 * 6 5 4 8 8 Si 1.86302 * 109.47475 * 180.27700 * 6 5 4 9 9 H 1.48497 * 109.46759 * 59.99954 * 8 6 5 10 10 H 1.48502 * 109.47242 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47012 * 299.99878 * 8 6 5 12 12 C 1.38517 * 120.40549 * 0.55505 * 5 4 3 13 13 C 1.37800 * 120.30691 * 359.72624 * 12 5 4 14 14 C 1.39724 * 119.90600 * 359.97438 * 13 12 5 15 15 C 1.47398 * 120.20163 * 179.97438 * 14 13 12 16 16 O 1.21510 * 120.00135 * 180.02562 * 15 14 13 17 17 O 1.34757 * 119.99853 * 0.02562 * 15 14 13 18 18 C 1.45197 * 116.99806 * 179.97438 * 17 15 14 19 19 Si 1.86296 * 109.47131 * 75.00563 * 18 17 15 20 20 C 1.86304 * 109.47057 * 59.99765 * 19 18 17 21 21 C 1.86304 * 109.47498 * 179.97438 * 19 18 17 22 22 C 1.86298 * 109.47344 * 300.00052 * 19 18 17 23 23 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46938 * 59.99691 * 1 2 3 25 25 H 1.09004 * 109.46926 * 299.99812 * 1 2 3 26 26 H 1.08000 * 119.95490 * 0.02562 * 4 3 2 27 27 H 1.09006 * 109.47435 * 60.27604 * 6 5 4 28 28 H 0.96698 * 113.99746 * 300.00100 * 7 6 5 29 29 H 1.08006 * 119.84316 * 179.70058 * 12 5 4 30 30 H 1.08005 * 120.04628 * 179.97438 * 13 12 5 31 31 H 1.09003 * 109.47267 * 195.00114 * 18 17 15 32 32 H 1.08996 * 109.47585 * 315.00348 * 18 17 15 33 33 H 1.09002 * 109.47421 * 59.99736 * 20 19 18 34 34 H 1.09003 * 109.47629 * 180.02562 * 20 19 18 35 35 H 1.09004 * 109.47001 * 300.00029 * 20 19 18 36 36 H 1.09000 * 109.46566 * 59.99932 * 21 19 18 37 37 H 1.08995 * 109.47209 * 180.02562 * 21 19 18 38 38 H 1.09002 * 109.46754 * 300.00126 * 21 19 18 39 39 H 1.09000 * 109.46997 * 59.99202 * 22 19 18 40 40 H 1.08999 * 109.47380 * 180.02562 * 22 19 18 41 41 H 1.09000 * 109.46814 * 300.00126 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2085 0.0000 4 6 1.2928 2.3735 -0.0057 5 6 1.9212 3.6032 0.0002 6 6 1.0975 4.8651 0.0004 7 8 0.2729 4.8959 -1.1665 8 14 2.2288 6.3453 0.0005 9 1 3.0855 6.3135 -1.2121 10 1 1.4170 7.5888 0.0012 11 1 3.0856 6.3134 1.2129 12 6 3.3040 3.6838 0.0002 13 6 4.0674 2.5366 0.0000 14 6 3.4451 1.2856 0.0004 15 6 4.2554 0.0543 -0.0004 16 8 3.7103 -1.0317 -0.0005 17 8 5.6006 0.1331 -0.0009 18 6 6.3342 -1.1200 -0.0010 19 14 6.2552 -1.8856 -1.6976 20 6 7.0128 -0.7222 -2.9398 21 6 7.1971 -3.4930 -1.6981 22 6 4.4772 -2.2069 -2.1517 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 0.2142 2.3191 -0.0097 27 1 0.4685 4.8885 0.8904 28 1 0.7668 4.8776 -1.9976 29 1 3.7860 4.6503 0.0000 30 1 5.1454 2.6044 -0.0004 31 1 7.3745 -0.9320 0.2646 32 1 5.8910 -1.8006 0.7258 33 1 8.0531 -0.5341 -2.6742 34 1 6.9662 -1.1699 -3.9326 35 1 6.4621 0.2185 -2.9397 36 1 6.7541 -4.1738 -0.9712 37 1 7.1512 -3.9407 -2.6908 38 1 8.2373 -3.3046 -1.4326 39 1 3.9265 -1.2663 -2.1515 40 1 4.4310 -2.6553 -3.1441 41 1 4.0339 -2.8876 -1.4248 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_13470092_4858416.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 04:47:08 Heat of formation + Delta-G solvation = -156.071833 kcal Electronic energy + Delta-G solvation = -22794.402057 eV Core-core repulsion = 19378.135646 eV Total energy + Delta-G solvation = -3416.266411 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.124 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.83320 -40.61070 -39.14725 -37.43170 -37.03913 -33.12192 -31.41140 -29.68237 -28.60695 -28.53567 -28.40916 -28.26310 -26.82079 -23.71424 -23.36792 -21.80582 -19.34089 -18.68768 -18.21952 -17.72364 -17.31665 -16.77892 -16.68897 -16.26136 -16.05260 -15.83658 -15.24701 -14.70913 -14.54196 -14.42426 -14.11199 -13.91641 -13.78216 -13.65007 -13.53982 -13.36726 -13.20671 -13.03679 -12.99233 -12.83230 -12.67190 -12.34993 -12.32626 -12.20094 -12.12941 -11.70665 -11.22556 -10.86270 -10.69338 -10.61854 -10.30609 -10.10078 -9.40079 -0.41562 0.24583 1.02375 1.36061 1.43034 1.48102 1.59314 1.68219 1.83104 1.90180 2.09949 2.16356 2.58168 2.63897 3.24831 3.43314 3.66752 3.82615 3.94614 4.06059 4.19417 4.20208 4.28243 4.35019 4.45417 4.57585 4.67400 4.69242 4.70009 4.72550 4.76927 4.80373 4.94041 4.98172 5.03298 5.03956 5.20440 5.44865 5.49677 5.52874 5.54467 5.83673 6.23975 6.39291 6.99794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.281 6.281 3 C 0.192 3.808 4 C -0.195 4.195 5 C -0.045 4.045 6 C -0.089 4.089 7 O -0.535 6.535 8 Si 0.953 3.047 9 H -0.248 1.248 10 H -0.252 1.252 11 H -0.248 1.248 12 C -0.180 4.180 13 C -0.018 4.018 14 C -0.159 4.159 15 C 0.492 3.508 16 O -0.471 6.471 17 O -0.337 6.337 18 C -0.236 4.236 19 Si 0.997 3.003 20 C -0.445 4.445 21 C -0.446 4.446 22 C -0.434 4.434 23 H 0.106 0.894 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.145 0.855 27 H 0.123 0.877 28 H 0.379 0.621 29 H 0.131 0.869 30 H 0.149 0.851 31 H 0.108 0.892 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.060 0.940 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.496 2.080 -0.500 2.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.192 6.192 3 C 0.144 3.856 4 C -0.214 4.214 5 C -0.045 4.045 6 C -0.199 4.199 7 O -0.341 6.341 8 Si 0.775 3.225 9 H -0.172 1.172 10 H -0.176 1.176 11 H -0.171 1.171 12 C -0.198 4.198 13 C -0.036 4.036 14 C -0.161 4.161 15 C 0.336 3.664 16 O -0.358 6.358 17 O -0.254 6.254 18 C -0.354 4.354 19 Si 1.193 2.807 20 C -0.553 4.553 21 C -0.554 4.554 22 C -0.543 4.543 23 H 0.124 0.876 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.162 0.838 27 H 0.141 0.859 28 H 0.226 0.774 29 H 0.148 0.852 30 H 0.167 0.833 31 H 0.127 0.873 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.508 2.266 -0.003 2.322 hybrid contribution -0.058 -0.450 -0.172 0.485 sum 0.450 1.816 -0.175 1.879 Atomic orbital electron populations 1.23250 0.77853 1.04784 1.01691 1.86345 1.21525 1.25091 1.86243 1.19046 0.90504 0.85296 0.90729 1.21068 1.00908 0.90633 1.08806 1.20396 0.93789 0.95535 0.94809 1.25148 1.00768 1.01610 0.92381 1.86531 1.35362 1.96887 1.15280 0.85619 0.77869 0.76914 0.82147 1.17152 1.17639 1.17119 1.20925 0.93058 0.98976 1.06832 1.21287 1.00912 0.89839 0.91612 1.18480 0.89553 0.92239 1.15791 1.20807 0.81525 0.89284 0.74818 1.90888 1.72378 1.28857 1.43718 1.86449 1.19031 1.35509 1.84386 1.28302 0.97856 0.89129 1.20162 0.79736 0.68678 0.67157 0.65171 1.26057 1.07038 1.10790 1.11428 1.26041 1.08375 1.16071 1.04928 1.26227 1.17928 1.05530 1.04573 0.87587 0.92112 0.92219 0.83776 0.85889 0.77397 0.85169 0.83317 0.87330 0.90168 0.91108 0.91035 0.91082 0.90977 0.90706 0.91096 0.91452 0.92105 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 9.81 101.05 0.99 0.98 16 2 O -0.28 -0.89 8.57 -40.49 -0.35 -1.24 16 3 C 0.19 0.47 6.70 -38.67 -0.26 0.21 16 4 C -0.20 -0.10 8.57 -39.47 -0.34 -0.44 16 5 C -0.04 0.01 5.40 -104.57 -0.56 -0.55 16 6 C -0.09 0.14 2.82 36.01 0.10 0.24 16 7 O -0.54 0.50 12.76 -35.23 -0.45 0.05 16 8 Si 0.95 -1.61 25.05 -169.99 -4.26 -5.86 16 9 H -0.25 0.39 7.11 56.52 0.40 0.79 16 10 H -0.25 0.03 7.11 56.52 0.40 0.43 16 11 H -0.25 0.29 7.11 56.52 0.40 0.69 16 12 C -0.18 0.07 8.64 -39.64 -0.34 -0.27 16 13 C -0.02 -0.01 9.61 -39.19 -0.38 -0.38 16 14 C -0.16 -0.42 5.88 -104.87 -0.62 -1.03 16 15 C 0.49 1.85 6.67 34.46 0.23 2.08 16 16 O -0.47 -2.62 10.87 -26.60 -0.29 -2.91 16 17 O -0.34 -0.77 9.16 -40.65 -0.37 -1.14 16 18 C -0.24 -0.11 5.40 101.05 0.55 0.44 16 19 Si 1.00 -0.66 12.12 -169.99 -2.06 -2.72 16 20 C -0.45 0.17 8.65 101.05 0.87 1.04 16 21 C -0.45 0.35 8.65 101.05 0.87 1.22 16 22 C -0.43 -0.89 7.10 101.05 0.72 -0.17 16 23 H 0.11 -0.19 8.14 -51.93 -0.42 -0.61 16 24 H 0.06 -0.11 7.65 -51.93 -0.40 -0.51 16 25 H 0.06 -0.11 7.67 -51.93 -0.40 -0.51 16 26 H 0.14 -0.12 6.30 -52.49 -0.33 -0.45 16 27 H 0.12 -0.30 7.96 -51.93 -0.41 -0.72 16 28 H 0.38 -1.52 8.70 45.56 0.40 -1.13 16 29 H 0.13 -0.27 4.85 -52.48 -0.25 -0.52 16 30 H 0.15 -0.20 7.61 -52.48 -0.40 -0.60 16 31 H 0.11 -0.18 7.96 -51.93 -0.41 -0.59 16 32 H 0.08 0.08 7.52 -51.93 -0.39 -0.31 16 33 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 34 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 35 H 0.07 0.01 7.96 -51.93 -0.41 -0.40 16 36 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 37 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 38 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 39 H 0.07 0.24 6.28 -51.93 -0.33 -0.08 16 40 H 0.06 0.08 7.96 -51.93 -0.41 -0.34 16 41 H 0.08 0.25 7.42 -51.93 -0.39 -0.13 16 LS Contribution 337.57 15.07 5.09 5.09 Total: 0.00 -6.43 337.57 -6.28 -12.71 By element: Atomic # 1 Polarization: -1.93 SS G_CDS: -5.43 Total: -7.35 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: 1.84 Total: 3.38 kcal Atomic # 8 Polarization: -3.78 SS G_CDS: -1.46 Total: -5.23 kcal Atomic # 14 Polarization: -2.27 SS G_CDS: -6.32 Total: -8.58 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -6.43 -6.28 -12.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13470092_4858416.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.364 kcal (2) G-P(sol) polarization free energy of solvation -6.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds