Wall clock time and date at job start Sat Mar 6 2021 04:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35638 * 117.00396 * 2 1 4 4 C 1.38674 * 120.15037 * 359.72881 * 3 2 1 5 5 C 1.38092 * 120.08344 * 179.71817 * 4 3 2 6 6 C 1.50701 * 119.79663 * 180.27893 * 5 4 3 7 7 O 1.42907 * 109.47133 * 300.27580 * 6 5 4 8 8 Si 1.86302 * 109.47475 * 180.27700 * 6 5 4 9 9 H 1.48497 * 109.46759 * 59.99954 * 8 6 5 10 10 H 1.48502 * 109.47242 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47012 * 299.99878 * 8 6 5 12 12 C 1.38517 * 120.40549 * 0.55505 * 5 4 3 13 13 C 1.37800 * 120.30691 * 359.72624 * 12 5 4 14 14 C 1.39724 * 119.90600 * 359.97438 * 13 12 5 15 15 C 1.47398 * 120.20163 * 179.97438 * 14 13 12 16 16 O 1.21510 * 120.00135 * 180.02562 * 15 14 13 17 17 O 1.34757 * 119.99853 * 0.02562 * 15 14 13 18 18 C 1.45197 * 116.99806 * 179.97438 * 17 15 14 19 19 Si 1.86296 * 109.47131 * 75.00563 * 18 17 15 20 20 C 1.86304 * 109.47057 * 59.99765 * 19 18 17 21 21 C 1.86304 * 109.47498 * 179.97438 * 19 18 17 22 22 C 1.86298 * 109.47344 * 300.00052 * 19 18 17 23 23 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46938 * 59.99691 * 1 2 3 25 25 H 1.09004 * 109.46926 * 299.99812 * 1 2 3 26 26 H 1.08000 * 119.95490 * 0.02562 * 4 3 2 27 27 H 1.09006 * 109.47435 * 60.27604 * 6 5 4 28 28 H 0.96698 * 113.99746 * 300.00100 * 7 6 5 29 29 H 1.08006 * 119.84316 * 179.70058 * 12 5 4 30 30 H 1.08005 * 120.04628 * 179.97438 * 13 12 5 31 31 H 1.09003 * 109.47267 * 195.00114 * 18 17 15 32 32 H 1.08996 * 109.47585 * 315.00348 * 18 17 15 33 33 H 1.09002 * 109.47421 * 59.99736 * 20 19 18 34 34 H 1.09003 * 109.47629 * 180.02562 * 20 19 18 35 35 H 1.09004 * 109.47001 * 300.00029 * 20 19 18 36 36 H 1.09000 * 109.46566 * 59.99932 * 21 19 18 37 37 H 1.08995 * 109.47209 * 180.02562 * 21 19 18 38 38 H 1.09002 * 109.46754 * 300.00126 * 21 19 18 39 39 H 1.09000 * 109.46997 * 59.99202 * 22 19 18 40 40 H 1.08999 * 109.47380 * 180.02562 * 22 19 18 41 41 H 1.09000 * 109.46814 * 300.00126 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2085 0.0000 4 6 1.2928 2.3735 -0.0057 5 6 1.9212 3.6032 0.0002 6 6 1.0975 4.8651 0.0004 7 8 0.2729 4.8959 -1.1665 8 14 2.2288 6.3453 0.0005 9 1 3.0855 6.3135 -1.2121 10 1 1.4170 7.5888 0.0012 11 1 3.0856 6.3134 1.2129 12 6 3.3040 3.6838 0.0002 13 6 4.0674 2.5366 0.0000 14 6 3.4451 1.2856 0.0004 15 6 4.2554 0.0543 -0.0004 16 8 3.7103 -1.0317 -0.0005 17 8 5.6006 0.1331 -0.0009 18 6 6.3342 -1.1200 -0.0010 19 14 6.2552 -1.8856 -1.6976 20 6 7.0128 -0.7222 -2.9398 21 6 7.1971 -3.4930 -1.6981 22 6 4.4772 -2.2069 -2.1517 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 0.2142 2.3191 -0.0097 27 1 0.4685 4.8885 0.8904 28 1 0.7668 4.8776 -1.9976 29 1 3.7860 4.6503 0.0000 30 1 5.1454 2.6044 -0.0004 31 1 7.3745 -0.9320 0.2646 32 1 5.8910 -1.8006 0.7258 33 1 8.0531 -0.5341 -2.6742 34 1 6.9662 -1.1699 -3.9326 35 1 6.4621 0.2185 -2.9397 36 1 6.7541 -4.1738 -0.9712 37 1 7.1512 -3.9407 -2.6908 38 1 8.2373 -3.3046 -1.4326 39 1 3.9265 -1.2663 -2.1515 40 1 4.4310 -2.6553 -3.1441 41 1 4.0339 -2.8876 -1.4248 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13470092_4858416.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 04:47:08 Heat of formation + Delta-G solvation = -149.852726 kcal Electronic energy + Delta-G solvation = -22794.132376 eV Core-core repulsion = 19378.135646 eV Total energy + Delta-G solvation = -3415.996730 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.124 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.93394 -40.74106 -39.15440 -37.39691 -37.22737 -33.14588 -31.43139 -29.69072 -28.59665 -28.54822 -28.36448 -28.35521 -26.80853 -23.73150 -23.39832 -21.90830 -19.40800 -18.73856 -18.22874 -17.82341 -17.47345 -16.81446 -16.73861 -16.16747 -15.99509 -15.83809 -15.18673 -14.67686 -14.60920 -14.49617 -14.10197 -13.93204 -13.80554 -13.63231 -13.53330 -13.39169 -13.23345 -13.06923 -13.03851 -12.86382 -12.62930 -12.46911 -12.25419 -12.15941 -12.05888 -11.64161 -11.41327 -10.84940 -10.76248 -10.54165 -10.37190 -10.11063 -9.45440 -0.48441 0.22337 1.15666 1.39216 1.50931 1.54716 1.56143 1.62831 1.89537 1.94904 2.09101 2.16642 2.54568 2.58608 3.34076 3.55516 3.67117 3.82391 3.97368 4.05430 4.25755 4.28321 4.29990 4.36229 4.55700 4.66189 4.70095 4.72610 4.74888 4.77462 4.80817 4.81769 4.82738 4.87598 4.92734 5.02279 5.20245 5.35171 5.51921 5.52400 5.60265 5.64175 6.21080 6.66020 6.79935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.310 6.310 3 C 0.177 3.823 4 C -0.197 4.197 5 C -0.040 4.040 6 C -0.087 4.087 7 O -0.549 6.549 8 Si 0.983 3.017 9 H -0.246 1.246 10 H -0.276 1.276 11 H -0.252 1.252 12 C -0.180 4.180 13 C -0.016 4.016 14 C -0.184 4.184 15 C 0.488 3.512 16 O -0.499 6.499 17 O -0.337 6.337 18 C -0.255 4.255 19 Si 1.055 2.945 20 C -0.451 4.451 21 C -0.449 4.449 22 C -0.454 4.454 23 H 0.112 0.888 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.155 0.845 27 H 0.133 0.867 28 H 0.391 0.609 29 H 0.149 0.851 30 H 0.165 0.835 31 H 0.134 0.866 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.046 0.954 40 H 0.063 0.937 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.437 2.994 -0.664 3.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.222 6.222 3 C 0.129 3.871 4 C -0.215 4.215 5 C -0.041 4.041 6 C -0.197 4.197 7 O -0.356 6.356 8 Si 0.807 3.193 9 H -0.169 1.169 10 H -0.201 1.201 11 H -0.175 1.175 12 C -0.197 4.197 13 C -0.034 4.034 14 C -0.186 4.186 15 C 0.333 3.667 16 O -0.389 6.389 17 O -0.253 6.253 18 C -0.372 4.372 19 Si 1.247 2.753 20 C -0.559 4.559 21 C -0.558 4.558 22 C -0.558 4.558 23 H 0.130 0.870 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.173 0.827 27 H 0.150 0.850 28 H 0.240 0.760 29 H 0.167 0.833 30 H 0.182 0.818 31 H 0.152 0.848 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.426 3.181 -0.175 3.491 hybrid contribution -0.405 -0.710 -0.127 0.827 sum 1.021 2.471 -0.302 2.691 Atomic orbital electron populations 1.23445 0.76349 1.05597 1.02747 1.86304 1.23311 1.26018 1.86521 1.19286 0.90778 0.85659 0.91404 1.21195 1.01388 0.90329 1.08633 1.20608 0.94080 0.95720 0.93695 1.25223 1.00881 1.00860 0.92703 1.86505 1.36162 1.96811 1.16095 0.85181 0.76997 0.75297 0.81845 1.16928 1.20125 1.17547 1.21161 0.93088 0.99452 1.06045 1.21490 1.01819 0.89241 0.90878 1.18689 0.89850 0.92625 1.17455 1.21126 0.81954 0.89442 0.74154 1.90867 1.72885 1.29882 1.45251 1.86436 1.18431 1.36374 1.84063 1.28663 0.98792 0.88653 1.21109 0.78867 0.65600 0.66943 0.63873 1.26104 1.07693 1.10462 1.11604 1.26056 1.09046 1.15598 1.05087 1.26540 1.20920 1.04037 1.04340 0.86999 0.91098 0.91039 0.82723 0.84978 0.75951 0.83326 0.81760 0.84832 0.91093 0.89905 0.90731 0.91699 0.91255 0.90433 0.89816 0.93428 0.91794 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.00 9.81 113.37 1.11 1.11 16 2 O -0.31 -2.63 8.57 -68.60 -0.59 -3.22 16 3 C 0.18 1.13 6.70 22.86 0.15 1.28 16 4 C -0.20 -0.27 8.57 22.34 0.19 -0.08 16 5 C -0.04 0.04 5.40 -19.83 -0.11 -0.06 16 6 C -0.09 0.34 2.82 71.24 0.20 0.55 16 7 O -0.55 1.43 12.76 -148.98 -1.90 -0.47 16 8 Si 0.98 -4.19 25.05 68.60 1.72 -2.47 16 9 H -0.25 1.13 7.11 99.48 0.71 1.84 16 10 H -0.28 0.07 7.11 99.48 0.71 0.77 16 11 H -0.25 0.89 7.11 99.48 0.71 1.59 16 12 C -0.18 0.27 8.64 22.23 0.19 0.46 16 13 C -0.02 -0.02 9.61 22.53 0.22 0.20 16 14 C -0.18 -1.22 5.88 -20.02 -0.12 -1.34 16 15 C 0.49 4.61 6.67 70.23 0.47 5.08 16 16 O -0.50 -6.94 10.87 26.81 0.29 -6.65 16 17 O -0.34 -1.83 9.16 -56.68 -0.52 -2.35 16 18 C -0.25 -0.34 5.40 113.37 0.61 0.28 16 19 Si 1.06 -1.04 12.12 68.60 0.83 -0.21 16 20 C -0.45 0.59 8.65 113.37 0.98 1.58 16 21 C -0.45 0.98 8.65 113.37 0.98 1.96 16 22 C -0.45 -2.88 7.10 113.37 0.80 -2.08 16 23 H 0.11 -0.24 8.14 -2.39 -0.02 -0.26 16 24 H 0.07 -0.20 7.65 -2.39 -0.02 -0.22 16 25 H 0.07 -0.22 7.67 -2.38 -0.02 -0.24 16 26 H 0.16 -0.24 6.30 -2.91 -0.02 -0.25 16 27 H 0.13 -0.78 7.96 -2.38 -0.02 -0.80 16 28 H 0.39 -3.42 8.70 -74.06 -0.64 -4.07 16 29 H 0.15 -0.83 4.85 -2.91 -0.01 -0.84 16 30 H 0.16 -0.49 7.61 -2.91 -0.02 -0.51 16 31 H 0.13 -0.56 7.96 -2.39 -0.02 -0.58 16 32 H 0.07 0.24 7.52 -2.39 -0.02 0.22 16 33 H 0.08 -0.28 7.96 -2.39 -0.02 -0.30 16 34 H 0.07 -0.12 7.96 -2.39 -0.02 -0.14 16 35 H 0.06 0.02 7.96 -2.39 -0.02 0.00 16 36 H 0.07 -0.08 7.96 -2.39 -0.02 -0.10 16 37 H 0.08 -0.18 7.96 -2.39 -0.02 -0.20 16 38 H 0.08 -0.36 7.96 -2.39 -0.02 -0.38 16 39 H 0.05 0.48 6.28 -2.39 -0.01 0.47 16 40 H 0.06 0.29 7.96 -2.39 -0.02 0.27 16 41 H 0.06 0.57 7.42 -2.39 -0.02 0.55 16 Total: 0.00 -16.30 337.57 6.67 -9.63 By element: Atomic # 1 Polarization: -4.33 SS G_CDS: 1.14 Total: -3.18 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: 5.69 Total: 8.92 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: -2.72 Total: -12.69 kcal Atomic # 14 Polarization: -5.23 SS G_CDS: 2.55 Total: -2.68 kcal Total: -16.30 6.67 -9.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13470092_4858416.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.218 kcal (2) G-P(sol) polarization free energy of solvation -16.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds