Wall clock time and date at job start Sat Mar 6 2021 07:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35640 * 116.99635 * 2 1 4 4 C 1.38654 * 120.15959 * 0.02923 * 3 2 1 5 5 C 1.38095 * 120.09290 * 179.97438 * 4 3 2 6 6 C 1.50704 * 119.80007 * 180.02562 * 5 4 3 7 7 O 1.42904 * 109.46902 * 299.99236 * 6 5 4 8 8 Si 1.86307 * 109.47122 * 179.97438 * 6 5 4 9 9 H 1.48501 * 109.47054 * 59.99738 * 8 6 5 10 10 H 1.48503 * 109.46851 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47019 * 299.99637 * 8 6 5 12 12 C 1.38518 * 120.40492 * 359.97438 * 5 4 3 13 13 C 1.37808 * 120.30506 * 359.74643 * 12 5 4 14 14 C 1.39730 * 119.90102 * 0.51231 * 13 12 5 15 15 C 1.47402 * 120.20060 * 179.76898 * 14 13 12 16 16 O 1.21507 * 120.00098 * 179.72045 * 15 14 13 17 17 O 1.34751 * 119.99545 * 359.71975 * 15 14 13 18 18 C 1.45206 * 116.99792 * 180.02562 * 17 15 14 19 19 C 1.50699 * 109.47021 * 179.97438 * 18 17 15 20 20 C 1.38236 * 120.00277 * 269.72923 * 19 18 17 21 21 C 1.38231 * 120.00348 * 179.76818 * 20 19 18 22 22 C 1.38239 * 119.99843 * 0.50260 * 21 20 19 23 23 Si 1.86794 * 119.99903 * 179.72414 * 22 21 20 24 24 C 1.86302 * 109.47380 * 270.02395 * 23 22 21 25 25 C 1.86296 * 109.47212 * 30.02603 * 23 22 21 26 26 C 1.86303 * 109.47075 * 150.02146 * 23 22 21 27 27 C 1.38229 * 119.99704 * 359.75174 * 22 21 20 28 28 C 1.38234 * 120.00615 * 359.97438 * 27 22 21 29 29 H 1.08997 * 109.47015 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47046 * 299.99455 * 1 2 3 31 31 H 1.09004 * 109.47219 * 59.99790 * 1 2 3 32 32 H 1.08010 * 119.95513 * 359.95029 * 4 3 2 33 33 H 1.08996 * 109.47389 * 59.99458 * 6 5 4 34 34 H 0.96697 * 113.99889 * 179.97438 * 7 6 5 35 35 H 1.08002 * 119.84779 * 180.02562 * 12 5 4 36 36 H 1.08000 * 120.04893 * 180.27935 * 13 12 5 37 37 H 1.09000 * 109.47070 * 300.00009 * 18 17 15 38 38 H 1.09001 * 109.46626 * 60.00027 * 18 17 15 39 39 H 1.08004 * 119.99728 * 359.97438 * 20 19 18 40 40 H 1.08001 * 119.99970 * 180.22692 * 21 20 19 41 41 H 1.08993 * 109.47055 * 59.99900 * 24 23 22 42 42 H 1.09003 * 109.47023 * 180.02562 * 24 23 22 43 43 H 1.09000 * 109.46948 * 300.00020 * 24 23 22 44 44 H 1.09003 * 109.47404 * 59.99804 * 25 23 22 45 45 H 1.09003 * 109.47567 * 179.97438 * 25 23 22 46 46 H 1.09001 * 109.47166 * 299.99877 * 25 23 22 47 47 H 1.09005 * 109.46656 * 59.99811 * 26 23 22 48 48 H 1.08997 * 109.47190 * 179.97438 * 26 23 22 49 49 H 1.08993 * 109.47404 * 300.00753 * 26 23 22 50 50 H 1.08006 * 120.00063 * 179.97438 * 27 22 21 51 51 H 1.07993 * 120.00649 * 179.97438 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2086 0.0000 4 6 1.2927 2.3735 0.0006 5 6 1.9210 3.6032 0.0011 6 6 1.0972 4.8652 0.0024 7 8 0.2723 4.8966 -1.1641 8 14 2.2286 6.3454 0.0036 9 1 3.0853 6.3146 -1.2090 10 1 1.4168 7.5889 0.0042 11 1 3.0854 6.3125 1.2161 12 6 3.3039 3.6840 0.0016 13 6 4.0674 2.5368 0.0068 14 6 3.4450 1.2858 0.0008 15 6 4.2554 0.0544 0.0012 16 8 3.7103 -1.0315 0.0011 17 8 5.6006 0.1333 0.0016 18 6 6.3343 -1.1198 0.0014 19 6 7.8142 -0.8353 0.0013 20 6 8.4939 -0.7102 -1.1959 21 6 9.8505 -0.4445 -1.1960 22 6 10.5294 -0.3142 0.0011 23 14 12.3640 0.0372 0.0010 24 6 13.3044 -1.5711 0.0006 25 6 12.8085 1.0168 -1.5200 26 6 12.8088 1.0164 1.5222 27 6 9.8506 -0.4445 1.1982 28 6 8.4930 -0.7046 1.1984 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 0.2140 2.3191 0.0003 33 1 0.4687 4.8879 0.8926 34 1 -0.2869 5.6828 -1.2292 35 1 3.7859 4.6505 0.0024 36 1 5.1453 2.6046 0.0117 37 1 6.0742 -1.6933 0.8911 38 1 6.0747 -1.6926 -0.8889 39 1 7.9645 -0.8168 -2.1312 40 1 10.3808 -0.3432 -2.1314 41 1 13.0441 -2.1439 -0.8894 42 1 14.3749 -1.3659 0.0010 43 1 13.0443 -2.1442 0.8905 44 1 12.2583 1.9578 -1.5198 45 1 13.8790 1.2223 -1.5199 46 1 12.5482 0.4440 -2.4101 47 1 12.5487 0.4432 2.4121 48 1 13.8794 1.2210 1.5224 49 1 12.2586 1.9572 1.5225 50 1 10.3811 -0.3431 2.1336 51 1 7.9628 -0.8068 2.1337 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_13470092_9435856.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 07:18:52 Heat of formation + Delta-G solvation = -142.837383 kcal Electronic energy + Delta-G solvation = -30717.222421 eV Core-core repulsion = 26477.550100 eV Total energy + Delta-G solvation = -4239.672322 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 374.155 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.79586 -40.74820 -39.81344 -39.04069 -37.48105 -37.12618 -33.41898 -32.69599 -31.86452 -31.37107 -29.58871 -28.58770 -28.44376 -28.41253 -28.07378 -26.72727 -23.66653 -23.45596 -23.40602 -22.10697 -21.75615 -19.24320 -18.66783 -18.38728 -18.09512 -17.45152 -17.34414 -16.90229 -16.67931 -16.33921 -16.04615 -15.89097 -15.79435 -15.42394 -14.80742 -14.52690 -14.47133 -14.36078 -14.21034 -14.15185 -14.07068 -13.99259 -13.82643 -13.74519 -13.40139 -13.35513 -13.25795 -13.24513 -13.10138 -12.91918 -12.77785 -12.60815 -12.35506 -12.11676 -12.06170 -12.00662 -11.80096 -11.47818 -11.26696 -11.02218 -10.90570 -10.81750 -10.56556 -10.04812 -9.76078 -9.66341 -9.36118 -0.38145 0.16523 0.29820 0.56689 1.01267 1.35646 1.42020 1.62883 1.69979 1.75354 1.82384 1.85036 2.04188 2.19500 2.54478 2.62418 2.98661 3.17182 3.53540 3.70790 3.72898 3.87605 3.89944 4.01682 4.08429 4.13350 4.16372 4.22253 4.30291 4.30957 4.41260 4.50950 4.53032 4.59798 4.68440 4.70329 4.71750 4.71773 4.75538 4.75922 4.76827 4.78209 4.97937 5.02460 5.07052 5.17690 5.27363 5.39604 5.45385 5.50511 5.53493 5.53946 5.56491 5.63474 5.65649 6.13103 6.27042 6.42149 6.96833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.283 6.283 3 C 0.194 3.806 4 C -0.194 4.194 5 C 0.002 3.998 6 C -0.091 4.091 7 O -0.542 6.542 8 Si 0.948 3.052 9 H -0.244 1.244 10 H -0.255 1.255 11 H -0.247 1.247 12 C -0.178 4.178 13 C -0.014 4.014 14 C -0.161 4.161 15 C 0.509 3.491 16 O -0.487 6.487 17 O -0.350 6.350 18 C 0.111 3.889 19 C -0.089 4.089 20 C -0.106 4.106 21 C -0.092 4.092 22 C -0.361 4.361 23 Si 1.060 2.940 24 C -0.450 4.450 25 C -0.450 4.450 26 C -0.450 4.450 27 C -0.092 4.092 28 C -0.106 4.106 29 H 0.106 0.894 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.144 0.856 33 H 0.083 0.917 34 H 0.383 0.617 35 H 0.131 0.869 36 H 0.150 0.850 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.069 0.931 48 H 0.071 0.929 49 H 0.070 0.930 50 H 0.123 0.877 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.054 3.910 1.108 4.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.193 6.193 3 C 0.145 3.855 4 C -0.212 4.212 5 C 0.002 3.998 6 C -0.201 4.201 7 O -0.349 6.349 8 Si 0.770 3.230 9 H -0.167 1.167 10 H -0.179 1.179 11 H -0.170 1.170 12 C -0.196 4.196 13 C -0.032 4.032 14 C -0.163 4.163 15 C 0.353 3.647 16 O -0.374 6.374 17 O -0.268 6.268 18 C 0.038 3.962 19 C -0.089 4.089 20 C -0.124 4.124 21 C -0.110 4.110 22 C -0.403 4.403 23 Si 1.252 2.748 24 C -0.557 4.557 25 C -0.557 4.557 26 C -0.557 4.557 27 C -0.110 4.110 28 C -0.124 4.124 29 H 0.124 0.876 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.161 0.839 33 H 0.101 0.899 34 H 0.231 0.769 35 H 0.148 0.852 36 H 0.167 0.833 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.090 0.910 49 H 0.090 0.910 50 H 0.141 0.859 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.766 3.457 0.998 3.679 hybrid contribution -1.144 0.069 0.107 1.151 sum -0.379 3.525 1.105 3.714 Atomic orbital electron populations 1.23249 0.77848 1.04774 1.01697 1.86343 1.21577 1.25135 1.86293 1.19016 0.90464 0.85247 0.90727 1.21025 1.00827 0.90610 1.08760 1.19322 0.92963 0.93607 0.93923 1.24871 0.99877 1.03931 0.91416 1.86500 1.58575 1.47966 1.41831 0.85690 0.79365 0.75700 0.82220 1.16703 1.17929 1.17013 1.20856 0.92826 0.99038 1.06901 1.21247 1.00867 0.89694 0.91441 1.18448 0.89481 0.92120 1.16255 1.20786 0.80954 0.89191 0.73722 1.90903 1.72588 1.29291 1.44645 1.86592 1.19190 1.36431 1.84602 1.21836 0.87199 0.83625 1.03587 1.19497 0.93027 1.02284 0.94077 1.21168 0.95012 0.98960 0.97251 1.21078 0.93888 0.97757 0.98228 1.27475 1.16747 1.01875 0.94180 0.78177 0.62094 0.67236 0.67331 1.26126 1.08399 1.16517 1.04640 1.26136 1.05492 1.09063 1.15048 1.26134 1.05491 1.09059 1.15046 1.21075 0.93876 0.97792 0.98222 1.21164 0.94998 0.98992 0.97243 0.87580 0.92229 0.92072 0.83860 0.89914 0.76879 0.85155 0.83253 0.90156 0.90164 0.86071 0.85881 0.91158 0.91029 0.91164 0.91033 0.90956 0.91161 0.91168 0.90956 0.91031 0.85887 0.86079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.00 9.81 101.05 0.99 0.99 16 2 O -0.28 -1.18 8.57 -40.50 -0.35 -1.53 16 3 C 0.19 0.69 6.70 -38.68 -0.26 0.43 16 4 C -0.19 -0.32 8.58 -39.48 -0.34 -0.66 16 5 C 0.00 0.00 5.43 -104.57 -0.57 -0.57 16 6 C -0.09 0.11 2.80 36.01 0.10 0.21 16 7 O -0.54 0.43 12.74 -35.23 -0.45 -0.02 16 8 Si 0.95 -1.35 25.05 -169.99 -4.26 -5.61 16 9 H -0.24 -0.01 7.11 56.52 0.40 0.39 16 10 H -0.26 0.33 7.11 56.52 0.40 0.73 16 11 H -0.25 0.24 7.11 56.52 0.40 0.64 16 12 C -0.18 -0.17 8.64 -39.64 -0.34 -0.51 16 13 C -0.01 -0.02 9.61 -39.18 -0.38 -0.40 16 14 C -0.16 -0.61 5.89 -104.86 -0.62 -1.23 16 15 C 0.51 2.63 7.89 34.46 0.27 2.91 16 16 O -0.49 -3.75 14.95 -26.59 -0.40 -4.15 16 17 O -0.35 -1.32 9.45 -40.63 -0.38 -1.70 16 18 C 0.11 0.28 5.60 36.01 0.20 0.48 16 19 C -0.09 -0.19 5.52 -104.62 -0.58 -0.76 16 20 C -0.11 -0.17 9.70 -39.58 -0.38 -0.55 16 21 C -0.09 -0.06 9.29 -39.58 -0.37 -0.42 16 22 C -0.36 0.00 4.59 -39.58 -0.18 -0.18 16 23 Si 1.06 -2.58 12.32 -169.99 -2.09 -4.67 16 24 C -0.45 0.63 8.65 101.05 0.87 1.50 16 25 C -0.45 0.78 8.53 101.05 0.86 1.64 16 26 C -0.45 0.79 8.53 101.05 0.86 1.65 16 27 C -0.09 -0.05 9.29 -39.59 -0.37 -0.42 16 28 C -0.11 -0.16 9.70 -39.58 -0.38 -0.54 16 29 H 0.11 -0.14 8.14 -51.93 -0.42 -0.57 16 30 H 0.06 -0.09 7.66 -51.93 -0.40 -0.49 16 31 H 0.06 -0.07 7.66 -51.93 -0.40 -0.46 16 32 H 0.14 0.00 6.30 -52.48 -0.33 -0.33 16 33 H 0.08 -0.26 7.96 -51.93 -0.41 -0.68 16 34 H 0.38 -2.00 8.74 45.56 0.40 -1.60 16 35 H 0.13 -0.10 4.85 -52.49 -0.25 -0.35 16 36 H 0.15 0.00 7.61 -52.49 -0.40 -0.40 16 37 H 0.08 0.17 8.08 -51.93 -0.42 -0.25 16 38 H 0.08 0.18 8.08 -51.93 -0.42 -0.24 16 39 H 0.12 0.05 8.06 -52.48 -0.42 -0.38 16 40 H 0.12 -0.17 7.43 -52.49 -0.39 -0.56 16 41 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 42 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 43 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 44 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 45 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 46 H 0.07 -0.13 7.69 -51.93 -0.40 -0.53 16 47 H 0.07 -0.13 7.69 -51.93 -0.40 -0.53 16 48 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 49 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 50 H 0.12 -0.17 7.43 -52.48 -0.39 -0.56 16 51 H 0.12 0.03 8.06 -52.49 -0.42 -0.39 16 LS Contribution 426.35 15.07 6.42 6.42 Total: 0.00 -8.62 426.35 -9.28 -17.90 By element: Atomic # 1 Polarization: -3.03 SS G_CDS: -7.17 Total: -10.20 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -0.60 Total: 3.57 kcal Atomic # 8 Polarization: -5.83 SS G_CDS: -1.58 Total: -7.41 kcal Atomic # 14 Polarization: -3.93 SS G_CDS: -6.35 Total: -10.28 kcal Total LS contribution 6.42 Total: 6.42 kcal Total: -8.62 -9.28 -17.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13470092_9435856.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.940 kcal (2) G-P(sol) polarization free energy of solvation -8.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds