Wall clock time and date at job start Sat Mar 6 2021 07:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35640 * 116.99635 * 2 1 4 4 C 1.38654 * 120.15959 * 0.02923 * 3 2 1 5 5 C 1.38095 * 120.09290 * 179.97438 * 4 3 2 6 6 C 1.50704 * 119.80007 * 180.02562 * 5 4 3 7 7 O 1.42904 * 109.46902 * 299.99236 * 6 5 4 8 8 Si 1.86307 * 109.47122 * 179.97438 * 6 5 4 9 9 H 1.48501 * 109.47054 * 59.99738 * 8 6 5 10 10 H 1.48503 * 109.46851 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47019 * 299.99637 * 8 6 5 12 12 C 1.38518 * 120.40492 * 359.97438 * 5 4 3 13 13 C 1.37808 * 120.30506 * 359.74643 * 12 5 4 14 14 C 1.39730 * 119.90102 * 0.51231 * 13 12 5 15 15 C 1.47402 * 120.20060 * 179.76898 * 14 13 12 16 16 O 1.21507 * 120.00098 * 179.72045 * 15 14 13 17 17 O 1.34751 * 119.99545 * 359.71975 * 15 14 13 18 18 C 1.45206 * 116.99792 * 180.02562 * 17 15 14 19 19 C 1.50699 * 109.47021 * 179.97438 * 18 17 15 20 20 C 1.38236 * 120.00277 * 269.72923 * 19 18 17 21 21 C 1.38231 * 120.00348 * 179.76818 * 20 19 18 22 22 C 1.38239 * 119.99843 * 0.50260 * 21 20 19 23 23 Si 1.86794 * 119.99903 * 179.72414 * 22 21 20 24 24 C 1.86302 * 109.47380 * 270.02395 * 23 22 21 25 25 C 1.86296 * 109.47212 * 30.02603 * 23 22 21 26 26 C 1.86303 * 109.47075 * 150.02146 * 23 22 21 27 27 C 1.38229 * 119.99704 * 359.75174 * 22 21 20 28 28 C 1.38234 * 120.00615 * 359.97438 * 27 22 21 29 29 H 1.08997 * 109.47015 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47046 * 299.99455 * 1 2 3 31 31 H 1.09004 * 109.47219 * 59.99790 * 1 2 3 32 32 H 1.08010 * 119.95513 * 359.95029 * 4 3 2 33 33 H 1.08996 * 109.47389 * 59.99458 * 6 5 4 34 34 H 0.96697 * 113.99889 * 179.97438 * 7 6 5 35 35 H 1.08002 * 119.84779 * 180.02562 * 12 5 4 36 36 H 1.08000 * 120.04893 * 180.27935 * 13 12 5 37 37 H 1.09000 * 109.47070 * 300.00009 * 18 17 15 38 38 H 1.09001 * 109.46626 * 60.00027 * 18 17 15 39 39 H 1.08004 * 119.99728 * 359.97438 * 20 19 18 40 40 H 1.08001 * 119.99970 * 180.22692 * 21 20 19 41 41 H 1.08993 * 109.47055 * 59.99900 * 24 23 22 42 42 H 1.09003 * 109.47023 * 180.02562 * 24 23 22 43 43 H 1.09000 * 109.46948 * 300.00020 * 24 23 22 44 44 H 1.09003 * 109.47404 * 59.99804 * 25 23 22 45 45 H 1.09003 * 109.47567 * 179.97438 * 25 23 22 46 46 H 1.09001 * 109.47166 * 299.99877 * 25 23 22 47 47 H 1.09005 * 109.46656 * 59.99811 * 26 23 22 48 48 H 1.08997 * 109.47190 * 179.97438 * 26 23 22 49 49 H 1.08993 * 109.47404 * 300.00753 * 26 23 22 50 50 H 1.08006 * 120.00063 * 179.97438 * 27 22 21 51 51 H 1.07993 * 120.00649 * 179.97438 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2086 0.0000 4 6 1.2927 2.3735 0.0006 5 6 1.9210 3.6032 0.0011 6 6 1.0972 4.8652 0.0024 7 8 0.2723 4.8966 -1.1641 8 14 2.2286 6.3454 0.0036 9 1 3.0853 6.3146 -1.2090 10 1 1.4168 7.5889 0.0042 11 1 3.0854 6.3125 1.2161 12 6 3.3039 3.6840 0.0016 13 6 4.0674 2.5368 0.0068 14 6 3.4450 1.2858 0.0008 15 6 4.2554 0.0544 0.0012 16 8 3.7103 -1.0315 0.0011 17 8 5.6006 0.1333 0.0016 18 6 6.3343 -1.1198 0.0014 19 6 7.8142 -0.8353 0.0013 20 6 8.4939 -0.7102 -1.1959 21 6 9.8505 -0.4445 -1.1960 22 6 10.5294 -0.3142 0.0011 23 14 12.3640 0.0372 0.0010 24 6 13.3044 -1.5711 0.0006 25 6 12.8085 1.0168 -1.5200 26 6 12.8088 1.0164 1.5222 27 6 9.8506 -0.4445 1.1982 28 6 8.4930 -0.7046 1.1984 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 0.2140 2.3191 0.0003 33 1 0.4687 4.8879 0.8926 34 1 -0.2869 5.6828 -1.2292 35 1 3.7859 4.6505 0.0024 36 1 5.1453 2.6046 0.0117 37 1 6.0742 -1.6933 0.8911 38 1 6.0747 -1.6926 -0.8889 39 1 7.9645 -0.8168 -2.1312 40 1 10.3808 -0.3432 -2.1314 41 1 13.0441 -2.1439 -0.8894 42 1 14.3749 -1.3659 0.0010 43 1 13.0443 -2.1442 0.8905 44 1 12.2583 1.9578 -1.5198 45 1 13.8790 1.2223 -1.5199 46 1 12.5482 0.4440 -2.4101 47 1 12.5487 0.4432 2.4121 48 1 13.8794 1.2210 1.5224 49 1 12.2586 1.9572 1.5225 50 1 10.3811 -0.3431 2.1336 51 1 7.9628 -0.8068 2.1337 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13470092_9435856.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 07:18:51 Heat of formation + Delta-G solvation = -134.926687 kcal Electronic energy + Delta-G solvation = -30716.879388 eV Core-core repulsion = 26477.550100 eV Total energy + Delta-G solvation = -4239.329288 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 374.155 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.01543 -40.94937 -39.91610 -39.10382 -37.52993 -37.37622 -33.53983 -32.77932 -31.90127 -31.47568 -29.44286 -28.59150 -28.27774 -28.26339 -28.17530 -26.81274 -23.78951 -23.50780 -23.49880 -22.19806 -21.94711 -19.43520 -18.62990 -18.58335 -18.17799 -17.63247 -17.49389 -17.04826 -16.78974 -16.37515 -15.98586 -15.93307 -15.92903 -15.51129 -14.77863 -14.57390 -14.50139 -14.38867 -14.20997 -14.15513 -14.04349 -13.96181 -13.77489 -13.71625 -13.53624 -13.37732 -13.14328 -13.09598 -12.95153 -12.93569 -12.74258 -12.66713 -12.40541 -12.13711 -12.08987 -12.01749 -11.75519 -11.72866 -11.55988 -10.91294 -10.78689 -10.74289 -10.49859 -10.10134 -9.82317 -9.70990 -9.50042 -0.55196 0.08945 0.18568 0.50586 1.13279 1.34027 1.48909 1.55499 1.57421 1.84443 1.93576 2.04187 2.12617 2.14371 2.47781 2.67511 2.92896 3.23670 3.47749 3.62218 3.69692 3.75354 3.76695 3.95318 4.06871 4.11557 4.19967 4.20047 4.26180 4.30055 4.32936 4.45793 4.52234 4.64179 4.68454 4.69374 4.85890 4.86092 4.86985 4.90205 4.91113 4.91567 4.92052 4.95897 4.97106 5.14649 5.18223 5.20767 5.39668 5.46932 5.55523 5.58005 5.60710 5.69281 5.72331 6.10147 6.17324 6.62404 6.78559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.312 6.312 3 C 0.180 3.820 4 C -0.195 4.195 5 C -0.001 4.001 6 C -0.090 4.090 7 O -0.560 6.560 8 Si 0.978 3.022 9 H -0.268 1.268 10 H -0.253 1.253 11 H -0.252 1.252 12 C -0.182 4.182 13 C -0.012 4.012 14 C -0.187 4.187 15 C 0.509 3.491 16 O -0.522 6.522 17 O -0.349 6.349 18 C 0.110 3.890 19 C -0.103 4.103 20 C -0.120 4.120 21 C -0.101 4.101 22 C -0.371 4.371 23 Si 1.129 2.871 24 C -0.464 4.464 25 C -0.462 4.462 26 C -0.462 4.462 27 C -0.101 4.101 28 C -0.120 4.120 29 H 0.114 0.886 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.160 0.840 33 H 0.108 0.892 34 H 0.402 0.598 35 H 0.147 0.853 36 H 0.161 0.839 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.126 0.874 40 H 0.142 0.858 41 H 0.066 0.934 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.075 0.925 46 H 0.071 0.929 47 H 0.072 0.928 48 H 0.075 0.925 49 H 0.068 0.932 50 H 0.143 0.857 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.315 5.410 1.381 5.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.223 6.223 3 C 0.132 3.868 4 C -0.213 4.213 5 C -0.002 4.002 6 C -0.200 4.200 7 O -0.369 6.369 8 Si 0.801 3.199 9 H -0.192 1.192 10 H -0.177 1.177 11 H -0.176 1.176 12 C -0.200 4.200 13 C -0.030 4.030 14 C -0.189 4.189 15 C 0.356 3.644 16 O -0.412 6.412 17 O -0.266 6.266 18 C 0.037 3.963 19 C -0.104 4.104 20 C -0.139 4.139 21 C -0.119 4.119 22 C -0.410 4.410 23 Si 1.316 2.684 24 C -0.570 4.570 25 C -0.570 4.570 26 C -0.569 4.569 27 C -0.118 4.118 28 C -0.138 4.138 29 H 0.132 0.868 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.177 0.823 33 H 0.126 0.874 34 H 0.253 0.747 35 H 0.164 0.836 36 H 0.179 0.821 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.144 0.856 40 H 0.160 0.840 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.094 0.906 46 H 0.091 0.909 47 H 0.091 0.909 48 H 0.094 0.906 49 H 0.088 0.912 50 H 0.160 0.840 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.001 4.975 1.275 5.233 hybrid contribution -1.226 -0.363 0.002 1.279 sum -0.225 4.613 1.278 4.792 Atomic orbital electron populations 1.23483 0.76058 1.05783 1.02896 1.86303 1.23643 1.25936 1.86466 1.19252 0.90622 0.85746 0.91166 1.21206 1.01540 0.90143 1.08448 1.19710 0.93383 0.94491 0.92579 1.24911 1.00245 1.02430 0.92376 1.86453 1.59025 1.49507 1.41961 0.85274 0.78520 0.75490 0.80606 1.19219 1.17716 1.17615 1.21104 0.93090 0.99403 1.06382 1.21394 1.01562 0.89200 0.90804 1.18607 0.89845 0.92201 1.18232 1.21136 0.81214 0.89365 0.72731 1.90868 1.73149 1.30558 1.46626 1.86595 1.18745 1.37052 1.84248 1.21899 0.87701 0.83269 1.03417 1.19533 0.92542 1.03517 0.94766 1.21367 0.95806 0.99366 0.97312 1.21394 0.93618 0.97417 0.99425 1.28125 1.18481 1.00687 0.93740 0.77142 0.59308 0.65704 0.66207 1.26298 1.08993 1.17312 1.04396 1.26279 1.05763 1.09208 1.15709 1.26270 1.05763 1.09201 1.15675 1.21398 0.93614 0.97398 0.99413 1.21369 0.95780 0.99308 0.97307 0.86787 0.90672 0.91129 0.82280 0.87410 0.74672 0.83573 0.82122 0.90280 0.90411 0.85621 0.84038 0.91445 0.90621 0.91416 0.91252 0.90612 0.90940 0.90894 0.90612 0.91230 0.83967 0.85504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.00 9.81 113.37 1.11 1.12 16 2 O -0.31 -3.16 8.57 -68.61 -0.59 -3.74 16 3 C 0.18 1.54 6.70 22.86 0.15 1.69 16 4 C -0.19 -0.67 8.58 22.33 0.19 -0.48 16 5 C 0.00 0.00 5.43 -19.83 -0.11 -0.11 16 6 C -0.09 0.34 2.80 71.24 0.20 0.54 16 7 O -0.56 1.64 12.74 -148.98 -1.90 -0.26 16 8 Si 0.98 -3.78 25.05 68.60 1.72 -2.06 16 9 H -0.27 0.00 7.11 99.48 0.71 0.71 16 10 H -0.25 1.05 7.11 99.48 0.71 1.75 16 11 H -0.25 0.75 7.11 99.48 0.71 1.46 16 12 C -0.18 -0.35 8.64 22.23 0.19 -0.15 16 13 C -0.01 -0.05 9.61 22.53 0.22 0.17 16 14 C -0.19 -1.75 5.89 -20.02 -0.12 -1.87 16 15 C 0.51 6.56 7.89 70.24 0.55 7.11 16 16 O -0.52 -9.61 14.95 26.81 0.40 -9.21 16 17 O -0.35 -3.41 9.45 -56.62 -0.54 -3.95 16 18 C 0.11 0.82 5.60 71.24 0.40 1.22 16 19 C -0.10 -0.60 5.52 -19.87 -0.11 -0.71 16 20 C -0.12 -0.52 9.70 22.27 0.22 -0.30 16 21 C -0.10 -0.14 9.29 22.27 0.21 0.06 16 22 C -0.37 0.06 4.59 22.27 0.10 0.17 16 23 Si 1.13 -6.42 12.32 68.60 0.85 -5.58 16 24 C -0.46 1.59 8.65 113.37 0.98 2.57 16 25 C -0.46 1.99 8.53 113.37 0.97 2.96 16 26 C -0.46 2.06 8.53 113.37 0.97 3.03 16 27 C -0.10 -0.12 9.29 22.27 0.21 0.08 16 28 C -0.12 -0.49 9.70 22.27 0.22 -0.27 16 29 H 0.11 -0.22 8.14 -2.39 -0.02 -0.24 16 30 H 0.07 -0.24 7.66 -2.39 -0.02 -0.26 16 31 H 0.07 -0.14 7.66 -2.39 -0.02 -0.16 16 32 H 0.16 -0.11 6.30 -2.91 -0.02 -0.12 16 33 H 0.11 -0.93 7.96 -2.39 -0.02 -0.95 16 34 H 0.40 -4.84 8.74 -74.06 -0.65 -5.48 16 35 H 0.15 -0.28 4.85 -2.91 -0.01 -0.29 16 36 H 0.16 0.14 7.61 -2.91 -0.02 0.12 16 37 H 0.08 0.56 8.08 -2.39 -0.02 0.54 16 38 H 0.08 0.57 8.08 -2.39 -0.02 0.55 16 39 H 0.13 0.29 8.06 -2.91 -0.02 0.27 16 40 H 0.14 -0.44 7.43 -2.91 -0.02 -0.46 16 41 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 42 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 43 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 44 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 45 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 46 H 0.07 -0.33 7.69 -2.39 -0.02 -0.35 16 47 H 0.07 -0.35 7.69 -2.38 -0.02 -0.37 16 48 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 49 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 50 H 0.14 -0.48 7.43 -2.91 -0.02 -0.51 16 51 H 0.13 0.23 8.06 -2.91 -0.02 0.21 16 Total: 0.00 -21.13 426.35 7.54 -13.60 By element: Atomic # 1 Polarization: -6.66 SS G_CDS: 1.05 Total: -5.62 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: 6.55 Total: 16.83 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -2.62 Total: -17.16 kcal Atomic # 14 Polarization: -10.21 SS G_CDS: 2.56 Total: -7.64 kcal Total: -21.13 7.54 -13.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13470092_9435856.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.329 kcal (2) G-P(sol) polarization free energy of solvation -21.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds