Wall clock time and date at job start Sat Mar 6 2021 04:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34231 * 116.99779 * 2 1 4 4 O 1.20824 * 120.00095 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99786 * 179.97438 * 3 2 1 6 6 H 1.09002 * 112.84685 * 48.81123 * 5 3 2 7 7 C 1.53780 * 113.61495 * 180.02562 * 5 3 2 8 8 C 1.53773 * 87.08100 * 140.06820 * 7 5 3 9 9 H 1.09009 * 113.61580 * 89.20075 * 8 7 5 10 10 C 1.50700 * 113.61589 * 220.01947 * 8 7 5 11 11 O 1.20822 * 119.99958 * 359.97438 * 10 8 7 12 12 O 1.34234 * 120.00068 * 180.02562 * 10 8 7 13 13 C 1.45196 * 116.99938 * 179.97438 * 12 10 8 14 14 C 1.50704 * 109.47016 * 179.97438 * 13 12 10 15 15 C 1.38935 * 120.03928 * 180.02562 * 14 13 12 16 16 O 1.34879 * 120.99514 * 359.97438 * 15 14 13 17 17 C 1.33718 * 122.41442 * 179.97438 * 16 15 14 18 18 C 1.34541 * 122.85592 * 359.97438 * 17 16 15 19 19 C 1.50703 * 120.20210 * 180.02562 * 18 17 16 20 20 O 1.42902 * 109.46854 * 250.00356 * 19 18 17 21 21 Si 1.86298 * 109.47132 * 9.99931 * 19 18 17 22 22 C 1.41995 * 119.59561 * 0.02575 * 18 17 16 23 23 O 1.21914 * 121.41007 * 180.02562 * 22 18 17 24 24 C 1.40457 * 119.33370 * 179.97438 * 15 14 13 25 25 C 1.39342 * 120.24155 * 359.97438 * 24 15 14 26 26 C 1.37882 * 119.52693 * 0.02562 * 25 24 15 27 27 Br 1.89098 * 119.86614 * 179.97438 * 26 25 24 28 28 C 1.37873 * 120.04013 * 359.72388 * 14 13 12 29 29 C 1.53779 * 113.69475 * 277.54110 * 5 3 2 30 30 H 1.09000 * 109.47322 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47314 * 299.99706 * 1 2 3 32 32 H 1.09003 * 109.47221 * 59.99373 * 1 2 3 33 33 H 1.08997 * 113.61550 * 25.52060 * 7 5 3 34 34 H 1.09001 * 113.61563 * 254.61678 * 7 5 3 35 35 H 1.08996 * 109.47465 * 299.99911 * 13 12 10 36 36 H 1.08999 * 109.47008 * 59.99921 * 13 12 10 37 37 H 1.07998 * 118.57416 * 180.02562 * 17 16 15 38 38 H 1.08997 * 109.47247 * 130.00511 * 19 18 17 39 39 H 0.96695 * 114.00527 * 59.99603 * 20 19 18 40 40 H 1.48497 * 109.99955 * 180.02562 * 21 19 18 41 41 H 1.48498 * 110.00040 * 301.32025 * 21 19 18 42 42 H 1.08004 * 120.23797 * 179.97438 * 25 24 15 43 43 H 1.08000 * 119.64564 * 359.97438 * 28 14 13 44 44 H 1.08995 * 113.61581 * 105.45960 * 29 5 3 45 45 H 1.09002 * 113.60898 * 334.55147 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0238 0.6363 -0.7550 7 6 4.1077 2.7142 0.0011 8 6 5.1820 2.2261 0.9872 9 1 6.0819 1.8491 0.5011 10 6 5.4805 3.2088 2.0900 11 8 4.8933 4.2639 2.1343 12 8 6.3995 2.9125 3.0224 13 6 6.6357 3.9063 4.0543 14 6 7.6910 3.4024 5.0049 15 6 8.0874 4.1849 6.0823 16 8 7.5415 5.3996 6.2966 17 6 7.9013 6.1759 7.3242 18 6 8.8322 5.8104 8.2242 19 6 9.1915 6.7329 9.3605 20 8 10.5098 7.2461 9.1587 21 14 7.9779 8.1451 9.4214 22 6 9.4741 4.5503 8.0969 23 8 10.3218 4.1856 8.8937 24 6 9.0717 3.7004 6.9593 25 6 9.6432 2.4471 6.7495 26 6 9.2359 1.6859 5.6743 27 35 10.0056 -0.0161 5.3800 28 6 8.2596 2.1616 4.8101 29 6 4.1925 1.1230 1.3968 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 3.4177 3.4401 0.4313 34 1 4.5098 3.0299 -0.9616 35 1 6.9742 4.8346 3.5941 36 1 5.7110 4.0884 4.6019 37 1 7.4233 7.1377 7.4371 38 1 9.1558 6.1824 10.3006 39 1 10.6152 7.7483 8.3392 40 1 8.3217 9.0624 10.5374 41 1 7.9940 8.8844 8.1336 42 1 10.4004 2.0748 7.4237 43 1 7.9444 1.5548 3.9741 44 1 4.6631 0.1537 1.5612 45 1 3.5256 1.4141 2.2084 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13604712_484008.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 04:51:21 Heat of formation + Delta-G solvation = -172.325427 kcal Electronic energy + Delta-G solvation = -35396.867417 eV Core-core repulsion = 30167.570019 eV Total energy + Delta-G solvation = -5229.297398 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 453.033 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -43.34330 -42.24354 -41.41572 -40.17386 -39.96347 -39.13853 -38.03060 -37.59310 -37.29496 -34.64880 -33.68421 -33.14498 -30.72942 -30.11366 -28.66538 -27.53436 -27.48696 -26.81608 -25.88492 -24.47389 -24.14887 -22.44711 -21.76897 -20.74692 -20.41205 -19.64853 -19.32631 -18.94564 -18.47514 -17.99218 -17.94061 -17.66764 -17.52987 -17.39416 -17.00350 -16.67611 -16.39268 -16.31784 -16.18241 -16.04677 -15.68727 -15.30419 -15.23297 -14.98693 -14.59736 -14.43528 -14.35646 -14.04811 -13.99897 -13.88901 -13.67431 -13.33125 -13.28590 -12.94464 -12.79229 -12.56098 -12.52040 -12.31872 -12.25997 -11.85911 -11.83996 -11.81267 -11.64186 -11.51401 -11.47736 -11.36763 -11.30967 -10.70763 -10.56973 -10.41226 -9.58034 -5.00168 -0.84371 -0.69522 0.03929 0.35636 0.97504 1.02029 1.13381 1.15751 1.33103 1.41042 1.46452 1.80222 1.95136 2.28120 2.68811 2.86896 3.17727 3.20848 3.23755 3.29763 3.37649 3.49017 3.56327 3.66725 3.74078 3.83564 3.97955 3.98948 4.06309 4.11605 4.13955 4.28111 4.29459 4.29514 4.32522 4.52269 4.56818 4.60643 4.63188 4.65224 4.66306 4.70733 4.79297 4.88400 4.94076 5.04290 5.25034 5.30195 5.36696 5.75172 6.32229 6.47175 6.62700 6.67329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.360 6.360 3 C 0.465 3.535 4 O -0.543 6.543 5 C -0.104 4.104 6 H 0.170 0.830 7 C -0.111 4.111 8 C -0.098 4.098 9 H 0.174 0.826 10 C 0.476 3.524 11 O -0.531 6.531 12 O -0.347 6.347 13 C 0.116 3.884 14 C -0.097 4.097 15 C 0.165 3.835 16 O -0.202 6.202 17 C 0.170 3.830 18 C -0.334 4.334 19 C -0.072 4.072 20 O -0.550 6.550 21 Si 0.783 3.217 22 C 0.424 3.576 23 O -0.495 6.495 24 C -0.226 4.226 25 C -0.009 4.009 26 C -0.120 4.120 27 Br -0.023 7.023 28 C -0.005 4.005 29 C -0.097 4.097 30 H 0.130 0.870 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.241 0.759 38 H 0.105 0.895 39 H 0.386 0.614 40 H -0.300 1.300 41 H -0.240 1.240 42 H 0.144 0.856 43 H 0.180 0.820 44 H 0.131 0.869 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.584 -2.719 -5.410 7.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.276 6.276 3 C 0.309 3.691 4 O -0.432 6.432 5 C -0.123 4.123 6 H 0.187 0.813 7 C -0.148 4.148 8 C -0.117 4.117 9 H 0.192 0.808 10 C 0.320 3.680 11 O -0.420 6.420 12 O -0.263 6.263 13 C 0.042 3.958 14 C -0.099 4.099 15 C 0.119 3.881 16 O -0.105 6.105 17 C 0.105 3.895 18 C -0.336 4.336 19 C -0.178 4.178 20 O -0.358 6.358 21 Si 0.683 3.317 22 C 0.311 3.689 23 O -0.378 6.378 24 C -0.229 4.229 25 C -0.029 4.029 26 C -0.200 4.200 27 Br 0.062 6.938 28 C -0.025 4.025 29 C -0.135 4.135 30 H 0.148 0.852 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.125 0.875 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.256 0.744 38 H 0.123 0.877 39 H 0.235 0.765 40 H -0.227 1.227 41 H -0.165 1.165 42 H 0.162 0.838 43 H 0.198 0.802 44 H 0.149 0.851 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.415 -2.340 -4.718 6.872 hybrid contribution 0.952 0.807 0.189 1.263 sum -3.463 -1.533 -4.529 5.904 Atomic orbital electron populations 1.23517 0.75251 1.05621 1.02283 1.86516 1.24559 1.33007 1.83475 1.24215 0.92953 0.80952 0.70950 1.90694 1.68094 1.37729 1.46725 1.22673 0.85548 1.01106 1.02927 0.81308 1.22988 0.96157 0.94915 1.00735 1.22662 1.01644 0.94746 0.92603 0.80827 1.23994 0.75272 0.86909 0.81798 1.90728 1.49718 1.26876 1.74666 1.86407 1.55920 1.47077 1.36913 1.21563 0.97367 0.90315 0.86522 1.18841 1.01200 0.94525 0.95312 1.18894 0.91950 0.83500 0.93792 1.83171 1.57826 1.25248 1.44248 1.24502 0.90367 0.93502 0.81123 1.21878 1.06305 1.00546 1.04909 1.25218 0.91789 1.03467 0.97306 1.86658 1.29651 1.72938 1.46561 0.94453 0.83663 0.74542 0.79015 1.18764 0.81051 0.86264 0.82857 1.90750 1.29641 1.74897 1.42535 1.20723 1.02718 0.98815 1.00636 1.21121 0.96100 0.90986 0.94731 1.21866 1.02703 0.95474 0.99964 1.96847 1.82219 1.18497 1.96210 1.21265 0.90390 0.93434 0.97382 1.22880 0.95864 1.00548 0.94190 0.85193 0.92328 0.92169 0.90343 0.87525 0.88198 0.88180 0.74376 0.87714 0.76507 1.22717 1.16518 0.83795 0.80240 0.85116 0.90434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.06 10.56 113.37 1.20 1.14 16 2 O -0.36 -0.18 10.57 -51.43 -0.54 -0.73 16 3 C 0.46 0.89 7.49 71.24 0.53 1.42 16 4 O -0.54 -5.42 15.65 21.97 0.34 -5.08 16 5 C -0.10 0.70 4.26 -11.02 -0.05 0.66 16 6 H 0.17 -2.27 8.14 -2.39 -0.02 -2.29 16 7 C -0.11 0.47 6.73 31.12 0.21 0.68 16 8 C -0.10 0.85 4.26 -11.03 -0.05 0.80 16 9 H 0.17 -2.75 8.14 -2.38 -0.02 -2.77 16 10 C 0.48 -1.06 7.48 71.24 0.53 -0.53 16 11 O -0.53 -2.93 15.65 21.98 0.34 -2.58 16 12 O -0.35 1.61 8.68 -51.46 -0.45 1.17 16 13 C 0.12 -0.52 5.38 71.24 0.38 -0.14 16 14 C -0.10 0.32 5.89 -19.78 -0.12 0.21 16 15 C 0.16 -0.21 6.74 22.98 0.15 -0.05 16 16 O -0.20 1.01 9.21 -2.71 -0.03 0.99 16 17 C 0.17 -1.19 9.99 66.97 0.67 -0.52 16 18 C -0.33 -0.06 5.32 -19.78 -0.11 -0.16 16 19 C -0.07 -0.05 2.46 71.24 0.17 0.12 16 20 O -0.55 -3.05 12.88 -148.98 -1.92 -4.97 16 21 Si 0.78 -5.29 30.06 68.60 2.06 -3.23 16 22 C 0.42 3.19 6.98 25.67 0.18 3.36 16 23 O -0.50 -7.92 16.93 -5.04 -0.09 -8.00 16 24 C -0.23 -0.81 5.89 -20.00 -0.12 -0.92 16 25 C -0.01 -0.03 9.40 22.45 0.21 0.18 16 26 C -0.12 -0.01 6.22 22.32 0.14 0.13 16 27 Br -0.02 0.00 33.69 -20.37 -0.69 -0.68 16 28 C -0.01 0.02 9.10 22.32 0.20 0.22 16 29 C -0.10 0.89 7.18 31.11 0.22 1.11 16 30 H 0.13 -1.04 8.14 -2.39 -0.02 -1.06 16 31 H 0.06 -0.07 8.13 -2.39 -0.02 -0.09 16 32 H 0.06 -0.08 8.13 -2.39 -0.02 -0.10 16 33 H 0.08 0.30 6.73 -2.39 -0.02 0.28 16 34 H 0.11 -0.78 8.14 -2.39 -0.02 -0.80 16 35 H 0.10 -0.50 8.13 -2.39 -0.02 -0.52 16 36 H 0.10 -0.50 8.13 -2.39 -0.02 -0.52 16 37 H 0.24 -3.59 4.61 -2.91 -0.01 -3.60 16 38 H 0.10 0.39 7.96 -2.39 -0.02 0.37 16 39 H 0.39 -1.06 8.70 -74.06 -0.64 -1.71 16 40 H -0.30 -0.78 7.11 99.48 0.71 -0.08 16 41 H -0.24 2.00 6.86 99.48 0.68 2.68 16 42 H 0.14 0.74 7.81 -2.91 -0.02 0.72 16 43 H 0.18 -1.28 6.96 -2.91 -0.02 -1.30 16 44 H 0.13 -1.90 8.14 -2.39 -0.02 -1.92 16 45 H 0.08 -0.40 8.05 -2.39 -0.02 -0.42 16 Total: 0.00 -32.43 412.64 3.88 -28.55 By element: Atomic # 1 Polarization: -13.60 SS G_CDS: 0.46 Total: -13.14 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: 4.38 Total: 7.71 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -2.33 Total: -19.21 kcal Atomic # 14 Polarization: -5.29 SS G_CDS: 2.06 Total: -3.23 kcal Atomic # 35 Polarization: 0.00 SS G_CDS: -0.69 Total: -0.68 kcal Total: -32.43 3.88 -28.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13604712_484008.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.777 kcal (2) G-P(sol) polarization free energy of solvation -32.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds