Wall clock time and date at job start Sat Mar 6 2021 05:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86298 * 109.47082 * 2 1 4 4 C 1.50700 * 109.46723 * 119.99597 * 2 1 3 5 5 C 1.34541 * 120.20434 * 249.97773 * 4 2 1 6 6 O 1.33711 * 122.85884 * 180.02562 * 5 4 2 7 7 C 1.34885 * 122.41201 * 359.95902 * 6 5 4 8 8 C 1.38930 * 120.98880 * 180.02562 * 7 6 5 9 9 C 1.50710 * 120.03982 * 0.02562 * 8 7 6 10 10 O 1.45196 * 109.46800 * 179.97438 * 9 8 7 11 11 C 1.34233 * 116.99767 * 179.97438 * 10 9 8 12 12 O 1.20825 * 119.99721 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99970 * 180.02562 * 11 10 9 14 14 H 1.09002 * 109.47179 * 60.00357 * 13 11 10 15 15 C 1.53009 * 109.46852 * 180.02562 * 13 11 10 16 16 C 1.53003 * 109.46749 * 180.02562 * 15 13 11 17 17 C 1.53005 * 109.46712 * 299.99460 * 16 15 13 18 18 H 1.09003 * 109.46536 * 180.02562 * 17 16 15 19 19 N 1.46496 * 109.47285 * 300.00125 * 17 16 15 20 20 C 1.36335 * 125.63944 * 329.85083 * 19 17 16 21 21 C 1.34849 * 108.21966 * 179.83106 * 20 19 17 22 22 C 1.40889 * 107.41740 * 0.41895 * 21 20 19 23 23 C 1.34853 * 107.41709 * 359.74048 * 22 21 20 24 24 C 1.53000 * 109.47155 * 60.00929 * 17 16 15 25 25 C 1.53000 * 109.46727 * 299.99496 * 24 17 16 26 26 C 1.37870 * 119.92060 * 180.29543 * 8 7 6 27 27 C 1.38786 * 120.69961 * 359.49312 * 26 8 7 28 28 Br 1.89106 * 119.86084 * 180.23912 * 27 26 8 29 29 C 1.37887 * 120.27789 * 0.48712 * 27 26 8 30 30 C 1.39344 * 119.52413 * 359.77338 * 29 27 26 31 31 C 1.42003 * 120.20510 * 70.00473 * 4 2 1 32 32 O 1.21921 * 121.40211 * 359.94837 * 31 4 2 33 33 H 0.96703 * 114.00376 * 300.00252 * 1 2 3 34 34 H 1.09000 * 109.47379 * 239.99321 * 2 1 3 35 35 H 1.48499 * 109.99871 * 299.99729 * 3 2 1 36 36 H 1.48498 * 110.00188 * 61.31514 * 3 2 1 37 37 H 1.07998 * 118.56860 * 0.04710 * 5 4 2 38 38 H 1.08999 * 109.46553 * 60.00004 * 9 8 7 39 39 H 1.08993 * 109.46870 * 300.00106 * 9 8 7 40 40 H 1.08992 * 109.47325 * 59.99963 * 15 13 11 41 41 H 1.09000 * 109.46891 * 299.99642 * 15 13 11 42 42 H 1.09004 * 109.46684 * 180.02562 * 16 15 13 43 43 H 1.08992 * 109.47539 * 59.99724 * 16 15 13 44 44 H 1.07999 * 125.88763 * 359.96099 * 20 19 17 45 45 H 1.08003 * 126.29468 * 180.16566 * 21 20 19 46 46 H 1.08003 * 126.29148 * 179.73093 * 22 21 20 47 47 H 1.07996 * 125.89146 * 180.02562 * 23 22 21 48 48 H 1.09002 * 109.47214 * 59.99014 * 24 17 16 49 49 H 1.09000 * 109.46972 * 179.97438 * 24 17 16 50 50 H 1.09000 * 109.47100 * 180.02562 * 25 24 17 51 51 H 1.09002 * 109.47178 * 300.00181 * 25 24 17 52 52 H 1.08002 * 119.65025 * 179.69925 * 26 8 7 53 53 H 1.08004 * 120.23928 * 179.74882 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9312 -0.7103 1.2305 5 6 2.5321 -0.0169 2.2145 6 8 2.9977 -0.5926 3.3279 7 6 2.8993 -1.9192 3.5513 8 6 3.3931 -2.4864 4.7195 9 6 4.0501 -1.6174 5.7609 10 8 4.4774 -2.4404 6.8783 11 6 5.0858 -1.8148 7.8982 12 8 5.2553 -0.6191 7.8588 13 6 5.5575 -2.6037 9.0924 14 1 6.2836 -3.3504 8.7708 15 6 6.2109 -1.6582 10.1025 16 6 6.6904 -2.4594 11.3146 17 6 5.4967 -3.1583 11.9685 18 1 5.8383 -3.7287 12.8323 19 7 4.5204 -2.1554 12.4011 20 6 4.8104 -0.8832 12.7964 21 6 3.6541 -0.2665 13.1142 22 6 2.6129 -1.1949 12.9168 23 6 3.1721 -2.3418 12.4804 24 6 4.8434 -4.1038 10.9585 25 6 4.3639 -3.3027 9.7463 26 6 3.2862 -3.8459 4.9225 27 6 2.6794 -4.6582 3.9748 28 35 2.5397 -6.5192 4.2806 29 6 2.1826 -4.1149 2.8090 30 6 2.2898 -2.7428 2.5907 31 6 1.7736 -2.1158 1.3585 32 8 1.2338 -2.7764 0.4874 33 1 -0.3934 0.4417 0.7650 34 1 1.7923 -0.5139 -0.8899 35 1 1.5614 2.4678 -1.2085 36 1 1.5878 2.4586 1.2242 37 1 2.6429 1.0513 2.1002 38 1 3.3386 -0.8700 6.1118 39 1 4.9155 -1.1188 5.3246 40 1 5.4847 -0.9118 10.4240 41 1 7.0616 -1.1606 9.6368 42 1 7.1555 -1.7857 12.0344 43 1 7.4168 -3.2055 10.9928 44 1 5.7961 -0.4444 12.8445 45 1 3.5463 0.7507 13.4607 46 1 1.5604 -1.0202 13.0844 47 1 2.6432 -3.2510 12.2355 48 1 5.5698 -4.8500 10.6366 49 1 3.9932 -4.6021 11.4245 50 1 3.8981 -3.9762 9.0269 51 1 3.6375 -2.5565 10.0682 52 1 3.6759 -4.2828 5.8300 53 1 1.7141 -4.7482 2.0701 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13654636_484008.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:04:34 Heat of formation + Delta-G solvation = -61.953247 kcal Electronic energy + Delta-G solvation = -41374.346741 eV Core-core repulsion = 35998.708775 eV Total energy + Delta-G solvation = -5375.637966 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 488.076 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -43.36062 -42.54079 -41.66874 -40.18549 -39.93668 -38.81737 -38.03848 -37.59406 -34.68061 -33.83599 -33.54959 -33.10756 -32.24382 -30.74402 -30.11165 -29.31499 -28.28509 -27.49864 -26.01711 -25.09563 -24.44864 -23.83213 -22.70833 -22.29228 -21.30125 -20.98992 -20.69247 -20.21760 -19.58968 -19.12430 -18.56565 -18.15070 -17.90747 -17.81583 -17.58517 -17.28479 -16.94833 -16.72298 -16.43848 -16.27365 -16.06508 -15.69673 -15.36233 -15.31723 -15.23672 -15.08171 -14.77061 -14.55886 -14.52002 -14.38584 -14.28895 -14.01500 -13.96790 -13.77922 -13.46862 -13.26833 -13.18506 -13.03876 -13.01914 -12.82032 -12.74723 -12.55013 -12.29313 -12.16581 -12.05324 -11.86566 -11.83824 -11.63085 -11.53076 -11.36299 -11.28526 -11.18959 -10.72185 -10.57712 -10.43708 -9.59938 -9.39299 -8.96960 -5.00596 -0.86268 -0.71496 0.02264 0.33139 0.96022 1.09259 1.15277 1.36870 1.39296 1.46274 1.47804 1.94773 2.14591 2.19209 2.26353 2.66985 2.84472 3.17213 3.28504 3.35318 3.40069 3.47510 3.64204 3.65935 3.72594 3.82009 3.88664 3.95277 3.95870 4.04006 4.09948 4.10875 4.21861 4.23810 4.27622 4.30556 4.35906 4.40559 4.46944 4.58132 4.60324 4.63783 4.68429 4.73163 4.77547 4.82912 4.86629 4.92442 5.01534 5.04195 5.09661 5.11328 5.20439 5.29023 5.34368 5.46233 5.51842 5.73674 6.14104 6.30867 6.39952 6.46500 6.61258 6.63434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.072 4.072 3 Si 0.784 3.216 4 C -0.333 4.333 5 C 0.170 3.830 6 O -0.203 6.203 7 C 0.165 3.835 8 C -0.097 4.097 9 C 0.117 3.883 10 O -0.350 6.350 11 C 0.470 3.530 12 O -0.532 6.532 13 C -0.072 4.072 14 H 0.141 0.859 15 C -0.107 4.107 16 C -0.122 4.122 17 C 0.125 3.875 18 H 0.101 0.899 19 N -0.434 5.434 20 C -0.015 4.015 21 C -0.234 4.234 22 C -0.234 4.234 23 C -0.013 4.013 24 C -0.122 4.122 25 C -0.112 4.112 26 C -0.006 4.006 27 C -0.120 4.120 28 Br -0.023 7.023 29 C -0.009 4.009 30 C -0.226 4.226 31 C 0.425 3.575 32 O -0.494 6.494 33 H 0.386 0.614 34 H 0.105 0.895 35 H -0.299 1.299 36 H -0.241 1.241 37 H 0.241 0.759 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.054 0.946 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.113 0.887 44 H 0.171 0.829 45 H 0.128 0.872 46 H 0.130 0.870 47 H 0.177 0.823 48 H 0.115 0.885 49 H 0.084 0.916 50 H 0.093 0.907 51 H 0.054 0.946 52 H 0.178 0.822 53 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.741 -0.536 4.944 9.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.178 4.178 3 Si 0.684 3.316 4 C -0.336 4.336 5 C 0.105 3.895 6 O -0.105 6.105 7 C 0.119 3.881 8 C -0.099 4.099 9 C 0.044 3.956 10 O -0.266 6.266 11 C 0.314 3.686 12 O -0.420 6.420 13 C -0.091 4.091 14 H 0.159 0.841 15 C -0.144 4.144 16 C -0.159 4.159 17 C 0.024 3.976 18 H 0.119 0.881 19 N -0.110 5.110 20 C -0.146 4.146 21 C -0.259 4.259 22 C -0.259 4.259 23 C -0.144 4.144 24 C -0.159 4.159 25 C -0.150 4.150 26 C -0.025 4.025 27 C -0.200 4.200 28 Br 0.063 6.937 29 C -0.029 4.029 30 C -0.228 4.228 31 C 0.311 3.689 32 O -0.378 6.378 33 H 0.235 0.765 34 H 0.123 0.877 35 H -0.227 1.227 36 H -0.166 1.166 37 H 0.256 0.744 38 H 0.113 0.887 39 H 0.121 0.879 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.098 0.902 43 H 0.131 0.869 44 H 0.189 0.811 45 H 0.146 0.854 46 H 0.148 0.852 47 H 0.194 0.806 48 H 0.133 0.867 49 H 0.102 0.898 50 H 0.112 0.888 51 H 0.072 0.928 52 H 0.195 0.805 53 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 7.689 -0.878 4.088 8.753 hybrid contribution -1.823 0.410 -0.244 1.884 sum 5.866 -0.468 3.844 7.029 Atomic orbital electron populations 1.86658 1.18830 1.80478 1.49826 1.25225 0.83360 1.12790 0.96415 0.94451 0.89096 0.69192 0.78836 1.21883 1.13229 0.95984 1.02471 1.24506 0.85686 0.98997 0.80349 1.83172 1.68210 1.20578 1.38574 1.18885 0.95275 0.80596 0.93348 1.18832 1.03752 0.94068 0.93245 1.21533 1.00192 0.90772 0.83128 1.86393 1.69751 1.42229 1.28257 1.24297 0.73495 0.87195 0.83572 1.90708 1.53759 1.17646 1.79933 1.21247 1.00306 0.98352 0.89178 0.84123 1.21444 1.00675 0.97361 0.94946 1.21882 0.96627 1.00799 0.96624 1.21789 0.88520 0.88757 0.98553 0.88101 1.44404 1.06357 1.10773 1.49420 1.21905 0.99909 0.85740 1.07018 1.21101 0.93309 1.00513 1.10981 1.21102 0.99280 0.95007 1.10496 1.21955 0.83336 1.00772 1.08308 1.21891 1.02702 0.97342 0.93977 1.21562 0.95720 0.99582 0.98127 1.21229 0.92056 0.90766 0.98461 1.21859 1.07076 0.92975 0.98077 1.96845 1.97476 1.03201 1.96214 1.21127 0.93056 0.93276 0.95431 1.20727 1.08259 0.95375 0.98479 1.18758 0.76429 0.89214 0.84517 1.90752 1.37174 1.67644 1.42180 0.76512 0.87665 1.22684 1.16608 0.74363 0.88736 0.87935 0.92686 0.90965 0.90237 0.86852 0.81143 0.85392 0.85243 0.80603 0.86693 0.89761 0.88806 0.92756 0.80478 0.83718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -3.11 12.88 -148.98 -1.92 -5.03 16 2 C -0.07 -0.06 2.46 71.24 0.17 0.12 16 3 Si 0.78 -5.27 30.06 68.60 2.06 -3.21 16 4 C -0.33 -0.10 5.32 -19.78 -0.11 -0.21 16 5 C 0.17 -1.14 9.99 66.97 0.67 -0.47 16 6 O -0.20 0.93 9.21 -2.71 -0.03 0.91 16 7 C 0.16 -0.13 6.74 22.98 0.15 0.02 16 8 C -0.10 0.26 5.89 -19.78 -0.12 0.14 16 9 C 0.12 -0.42 5.38 71.24 0.38 -0.04 16 10 O -0.35 1.20 8.58 -51.45 -0.44 0.76 16 11 C 0.47 -0.48 7.26 71.24 0.52 0.04 16 12 O -0.53 -3.22 15.73 21.97 0.35 -2.88 16 13 C -0.07 0.50 2.63 -11.54 -0.03 0.47 16 14 H 0.14 -1.74 8.14 -2.39 -0.02 -1.76 16 15 C -0.11 0.51 4.27 30.60 0.13 0.64 16 16 C -0.12 1.16 5.03 30.60 0.15 1.31 16 17 C 0.12 -1.01 3.55 44.99 0.16 -0.85 16 18 H 0.10 -0.97 8.14 -2.39 -0.02 -0.99 16 19 N -0.43 0.59 2.26 -502.01 -1.13 -0.54 16 20 C -0.02 -0.03 9.04 83.21 0.75 0.72 16 21 C -0.23 -1.42 10.86 22.14 0.24 -1.18 16 22 C -0.23 -1.30 10.86 22.14 0.24 -1.06 16 23 C -0.01 -0.01 9.04 83.21 0.75 0.74 16 24 C -0.12 1.36 5.03 30.59 0.15 1.51 16 25 C -0.11 0.89 4.92 30.59 0.15 1.04 16 26 C -0.01 0.02 9.10 22.31 0.20 0.22 16 27 C -0.12 -0.05 6.22 22.32 0.14 0.09 16 28 Br -0.02 0.00 33.69 -20.37 -0.69 -0.69 16 29 C -0.01 -0.03 9.40 22.45 0.21 0.18 16 30 C -0.23 -0.87 5.89 -20.01 -0.12 -0.98 16 31 C 0.42 3.25 6.98 25.67 0.18 3.43 16 32 O -0.49 -7.94 16.93 -5.06 -0.09 -8.03 16 33 H 0.39 -0.99 8.70 -74.06 -0.64 -1.63 16 34 H 0.11 0.38 7.96 -2.39 -0.02 0.36 16 35 H -0.30 -0.78 7.11 99.48 0.71 -0.07 16 36 H -0.24 1.97 6.86 99.48 0.68 2.65 16 37 H 0.24 -3.54 4.61 -2.91 -0.01 -3.55 16 38 H 0.09 -0.31 8.13 -2.39 -0.02 -0.33 16 39 H 0.10 -0.48 8.13 -2.39 -0.02 -0.50 16 40 H 0.05 0.09 6.34 -2.39 -0.02 0.07 16 41 H 0.07 -0.25 8.10 -2.39 -0.02 -0.27 16 42 H 0.08 -0.70 7.09 -2.39 -0.02 -0.71 16 43 H 0.11 -1.59 8.14 -2.39 -0.02 -1.61 16 44 H 0.17 -0.31 7.14 -2.91 -0.02 -0.33 16 45 H 0.13 0.67 8.06 -2.91 -0.02 0.65 16 46 H 0.13 0.58 8.06 -2.91 -0.02 0.56 16 47 H 0.18 -0.68 7.14 -2.91 -0.02 -0.70 16 48 H 0.11 -1.79 8.14 -2.39 -0.02 -1.81 16 49 H 0.08 -0.94 7.09 -2.39 -0.02 -0.96 16 50 H 0.09 -0.92 8.11 -2.39 -0.02 -0.94 16 51 H 0.05 -0.12 6.38 -2.39 -0.02 -0.14 16 52 H 0.18 -1.12 6.96 -2.91 -0.02 -1.14 16 53 H 0.15 0.77 7.81 -2.91 -0.02 0.75 16 Total: 0.00 -28.72 447.52 3.47 -25.25 By element: Atomic # 1 Polarization: -12.77 SS G_CDS: 0.36 Total: -12.41 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 5.00 Total: 5.87 kcal Atomic # 7 Polarization: 0.59 SS G_CDS: -1.13 Total: -0.54 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -2.13 Total: -14.27 kcal Atomic # 14 Polarization: -5.27 SS G_CDS: 2.06 Total: -3.21 kcal Atomic # 35 Polarization: 0.00 SS G_CDS: -0.69 Total: -0.69 kcal Total: -28.72 3.47 -25.25 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13654636_484008.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.706 kcal (2) G-P(sol) polarization free energy of solvation -28.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds