Wall clock time and date at job start Sat Mar 6 2021 05:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 111.76655 * 2 1 4 4 C 1.56948 * 112.02943 * 126.66560 * 2 1 3 5 5 C 1.55926 * 100.65044 * 63.17055 * 4 2 1 6 6 C 1.56529 * 104.82230 * 34.05367 * 5 4 2 7 7 C 1.55930 * 103.72553 * 359.59560 * 6 5 4 8 8 C 1.50696 * 115.91900 * 199.69843 * 7 6 5 9 9 O 1.20837 * 120.00005 * 117.94244 * 8 7 6 10 10 O 1.34224 * 120.00332 * 297.93645 * 8 7 6 11 11 C 1.45202 * 117.00181 * 180.02562 * 10 8 7 12 12 C 1.50704 * 109.47307 * 180.02562 * 11 10 8 13 13 C 1.38930 * 120.04513 * 179.97438 * 12 11 10 14 14 O 1.34890 * 120.98261 * 0.02562 * 13 12 11 15 15 C 1.33717 * 122.40707 * 180.02562 * 14 13 12 16 16 C 1.34531 * 122.85616 * 359.95934 * 15 14 13 17 17 C 1.50707 * 120.19613 * 180.02562 * 16 15 14 18 18 O 1.42903 * 109.46781 * 249.97081 * 17 16 15 19 19 Si 1.86293 * 109.47242 * 9.97620 * 17 16 15 20 20 C 1.41999 * 119.60165 * 0.02562 * 16 15 14 21 21 O 1.21918 * 121.40845 * 179.97438 * 20 16 15 22 22 C 1.40446 * 119.34453 * 180.02562 * 13 12 11 23 23 C 1.39350 * 120.23833 * 359.97438 * 22 13 12 24 24 C 1.37891 * 119.52014 * 359.97438 * 23 22 13 25 25 Br 1.89104 * 119.86092 * 180.02562 * 24 23 22 26 26 C 1.37873 * 120.03718 * 359.72392 * 12 11 10 27 27 C 1.55919 * 104.49606 * 70.81793 * 7 6 5 28 28 C 1.54585 * 104.64482 * 288.91348 * 27 7 6 29 29 H 1.08997 * 109.46911 * 294.79317 * 1 2 3 30 30 H 1.09009 * 109.46829 * 54.78588 * 1 2 3 31 31 H 1.09001 * 109.47382 * 174.78499 * 1 2 3 32 32 H 1.08991 * 109.47374 * 185.21111 * 3 2 1 33 33 H 1.08999 * 109.47081 * 305.21512 * 3 2 1 34 34 H 1.09004 * 109.47072 * 65.21055 * 3 2 1 35 35 H 1.09004 * 116.86718 * 296.74342 * 4 2 1 36 36 H 1.09001 * 110.40654 * 152.57059 * 5 4 2 37 37 H 1.09003 * 110.40731 * 274.99255 * 5 4 2 38 38 H 1.09003 * 110.38284 * 241.32598 * 6 5 4 39 39 H 1.09003 * 111.30364 * 118.30984 * 6 5 4 40 40 H 1.08997 * 109.46910 * 299.99670 * 11 10 8 41 41 H 1.08993 * 109.47167 * 60.00025 * 11 10 8 42 42 H 1.08004 * 118.56836 * 179.97438 * 15 14 13 43 43 H 1.09001 * 109.47088 * 129.97665 * 17 16 15 44 44 H 0.96705 * 113.99386 * 60.00963 * 18 17 16 45 45 H 1.48496 * 110.00275 * 58.68371 * 19 17 16 46 46 H 1.48503 * 109.99702 * 180.02562 * 19 17 16 47 47 H 1.07998 * 120.24147 * 180.02562 * 23 22 13 48 48 H 1.07998 * 119.65289 * 359.97438 * 26 12 11 49 49 H 1.09001 * 110.40387 * 170.12503 * 27 7 6 50 50 H 1.08999 * 110.50860 * 47.75503 * 27 7 6 51 51 H 1.08999 * 110.40122 * 241.21400 * 28 27 7 52 52 H 1.08994 * 110.50342 * 118.84258 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0974 1.4209 0.0000 4 6 2.1187 -0.8688 1.1670 5 6 1.5856 -2.2801 0.7728 6 6 1.5906 -2.2872 -0.7924 7 6 2.1187 -0.8687 -1.1672 8 6 1.8120 -0.4000 -2.5662 9 8 1.1310 0.5831 -2.7384 10 8 2.2955 -1.0746 -3.6211 11 6 1.9603 -0.5656 -4.9390 12 6 2.5853 -1.4451 -5.9912 13 6 2.4026 -1.1560 -7.3377 14 8 1.6697 -0.0923 -7.7263 15 6 1.4750 0.2120 -9.0138 16 6 1.9923 -0.5137 -10.0216 17 6 1.7350 -0.1156 -11.4522 18 8 0.8651 -1.0706 -12.0632 19 14 0.9375 1.5675 -11.4946 20 6 2.7821 -1.6570 -9.7293 21 8 3.2665 -2.3384 -10.6167 22 6 2.9913 -1.9858 -8.3059 23 6 3.7513 -3.0874 -7.9176 24 6 3.9215 -3.3565 -6.5760 25 35 4.9515 -4.8485 -6.0383 26 6 3.3435 -2.5347 -5.6185 27 6 3.6269 -0.8971 -0.7730 28 6 3.6270 -0.8971 0.7728 29 1 -0.3633 0.4309 0.9329 30 1 -0.3633 0.5926 -0.8397 31 1 -0.3634 -1.0234 -0.0934 32 1 3.1824 1.3789 -0.0933 33 1 1.6817 1.9781 -0.8396 34 1 1.8319 1.9182 0.9330 35 1 1.8978 -0.5429 2.1835 36 1 2.2493 -3.0568 1.1527 37 1 0.5742 -2.4241 1.1528 38 1 0.5797 -2.4296 -1.1746 39 1 2.2571 -3.0562 -1.1829 40 1 0.8775 -0.5644 -5.0635 41 1 2.3392 0.4511 -5.0430 42 1 0.8766 1.0781 -9.2550 43 1 2.6791 -0.0841 -11.9960 44 1 0.0041 -1.1517 -11.6304 45 1 1.8183 2.5637 -10.8338 46 1 0.6780 1.9712 -12.8999 47 1 4.2043 -3.7253 -8.6621 48 1 3.4865 -2.7529 -4.5705 49 1 4.1357 -0.0111 -1.1530 50 1 4.1040 -1.8004 -1.1530 51 1 4.1357 -0.0112 1.1528 52 1 4.1026 -1.8005 1.1545 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13758428_484008.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:21:20 Heat of formation + Delta-G solvation = -107.931662 kcal Electronic energy + Delta-G solvation = -38887.916154 eV Core-core repulsion = 33832.162606 eV Total energy + Delta-G solvation = -5055.753548 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 463.081 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -43.35916 -42.50111 -40.87727 -40.18256 -39.78329 -37.91133 -37.58583 -34.65036 -33.71198 -33.20829 -32.93148 -31.99436 -31.13750 -30.72105 -28.22618 -27.48547 -27.46726 -25.97361 -25.33126 -24.45706 -23.38976 -23.14031 -22.36180 -20.85934 -20.39999 -19.53299 -19.49388 -18.90721 -18.18404 -17.97572 -17.61219 -17.42547 -17.35343 -16.78579 -16.60783 -16.47641 -16.22447 -16.08779 -15.79380 -15.59227 -15.48293 -15.29791 -14.86835 -14.76114 -14.55896 -14.31339 -14.13038 -14.03746 -13.72491 -13.63425 -13.43604 -13.21473 -13.08716 -12.85068 -12.83783 -12.76139 -12.61386 -12.43791 -12.24356 -12.12765 -12.10079 -11.88976 -11.82289 -11.54127 -11.53620 -11.42697 -11.31643 -11.26269 -10.88739 -10.83989 -10.71409 -10.45650 -10.42380 -9.60055 -5.14376 -0.86782 -0.71869 0.02505 0.32142 0.95973 1.07276 1.15479 1.36075 1.38659 1.58408 1.96178 2.26067 2.66702 2.84220 3.12358 3.19402 3.30835 3.41849 3.43271 3.48093 3.62688 3.64923 3.77583 3.87365 3.95751 4.09654 4.10267 4.11746 4.16257 4.19653 4.26249 4.28724 4.38472 4.42379 4.49365 4.49987 4.52549 4.54925 4.56993 4.62687 4.67435 4.77047 4.82942 4.93845 4.95889 5.00836 5.02957 5.08457 5.11247 5.19408 5.20339 5.24272 5.27188 5.36526 5.46069 5.49946 5.53443 5.73649 6.30342 6.65721 6.75598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.042 4.042 3 C -0.142 4.142 4 C -0.091 4.091 5 C -0.117 4.117 6 C -0.103 4.103 7 C -0.080 4.080 8 C 0.498 3.502 9 O -0.515 6.515 10 O -0.351 6.351 11 C 0.116 3.884 12 C -0.096 4.096 13 C 0.167 3.833 14 O -0.201 6.201 15 C 0.178 3.822 16 C -0.340 4.340 17 C -0.063 4.063 18 O -0.558 6.558 19 Si 0.802 3.198 20 C 0.424 3.576 21 O -0.497 6.497 22 C -0.226 4.226 23 C -0.009 4.009 24 C -0.120 4.120 25 Br -0.025 7.025 26 C -0.007 4.007 27 C -0.103 4.103 28 C -0.118 4.118 29 H 0.064 0.936 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.047 0.953 34 H 0.064 0.936 35 H 0.113 0.887 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.247 0.753 43 H 0.089 0.911 44 H 0.395 0.605 45 H -0.259 1.259 46 H -0.296 1.296 47 H 0.144 0.856 48 H 0.175 0.825 49 H 0.063 0.937 50 H 0.086 0.914 51 H 0.070 0.930 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.760 2.832 8.096 9.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.042 4.042 3 C -0.200 4.200 4 C -0.109 4.109 5 C -0.154 4.154 6 C -0.140 4.140 7 C -0.081 4.081 8 C 0.341 3.659 9 O -0.403 6.403 10 O -0.267 6.267 11 C 0.043 3.957 12 C -0.098 4.098 13 C 0.121 3.879 14 O -0.104 6.104 15 C 0.113 3.887 16 C -0.343 4.343 17 C -0.170 4.170 18 O -0.366 6.366 19 Si 0.703 3.297 20 C 0.310 3.690 21 O -0.380 6.380 22 C -0.229 4.229 23 C -0.029 4.029 24 C -0.200 4.200 25 Br 0.061 6.939 26 C -0.027 4.027 27 C -0.141 4.141 28 C -0.155 4.155 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.131 0.869 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.106 0.894 40 H 0.121 0.879 41 H 0.118 0.882 42 H 0.262 0.738 43 H 0.107 0.893 44 H 0.245 0.755 45 H -0.185 1.185 46 H -0.224 1.224 47 H 0.162 0.838 48 H 0.192 0.808 49 H 0.082 0.918 50 H 0.104 0.896 51 H 0.089 0.911 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.826 3.053 7.273 8.379 hybrid contribution 0.613 -0.307 -1.218 1.398 sum -2.212 2.746 6.055 7.007 Atomic orbital electron populations 1.21784 0.93933 1.02241 1.01955 1.22384 0.95196 0.94192 0.92397 1.21789 1.01083 0.95121 1.01961 1.23638 0.94892 0.94596 0.97747 1.22958 1.01997 0.96828 0.93640 1.22961 1.01358 0.92773 0.96929 1.22695 1.00042 0.99164 0.86167 1.23123 0.75605 0.80441 0.86710 1.90673 1.36553 1.26490 1.86580 1.86410 1.70053 1.55130 1.15149 1.21578 1.01077 0.96258 0.76773 1.18833 1.02806 0.98737 0.89408 1.18844 0.91176 0.85768 0.92135 1.83172 1.59754 1.40989 1.26456 1.24422 0.90596 0.95610 0.78084 1.21966 1.10664 1.02443 0.99246 1.25211 0.98036 1.05535 0.88169 1.86553 1.30145 1.62947 1.56921 0.94433 0.83872 0.69658 0.81688 1.18786 0.78705 0.84486 0.87012 1.90751 1.45872 1.51471 1.49906 1.20732 1.06404 1.00176 0.95548 1.21119 0.92694 0.94011 0.95118 1.21852 1.04720 0.98583 0.94811 1.96842 1.68834 1.37176 1.91025 1.21215 0.90425 0.89875 1.01158 1.22606 0.91469 1.02971 0.97026 1.22637 0.96114 1.02895 0.93879 0.91745 0.93396 0.91743 0.91823 0.93436 0.91713 0.86935 0.90203 0.90987 0.91645 0.89418 0.87870 0.88167 0.73812 0.89300 0.75549 1.18469 1.22369 0.83784 0.80813 0.91778 0.89584 0.91120 0.90132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.10 8.34 71.98 0.60 0.70 16 2 C -0.04 0.09 0.56 -49.41 -0.03 0.06 16 3 C -0.14 0.07 8.33 71.98 0.60 0.67 16 4 C -0.09 0.48 4.51 -7.38 -0.03 0.45 16 5 C -0.12 0.71 5.58 32.84 0.18 0.90 16 6 C -0.10 0.49 5.35 32.84 0.18 0.67 16 7 C -0.08 0.19 0.83 -49.52 -0.04 0.15 16 8 C 0.50 0.45 7.12 71.23 0.51 0.96 16 9 O -0.52 -2.90 13.82 21.93 0.30 -2.60 16 10 O -0.35 0.56 8.68 -51.36 -0.45 0.11 16 11 C 0.12 -0.38 5.38 71.24 0.38 0.00 16 12 C -0.10 0.20 5.89 -19.78 -0.12 0.09 16 13 C 0.17 -0.11 6.74 22.97 0.15 0.05 16 14 O -0.20 1.04 9.21 -2.82 -0.03 1.01 16 15 C 0.18 -1.33 9.99 66.97 0.67 -0.66 16 16 C -0.34 -0.13 5.32 -19.78 -0.11 -0.24 16 17 C -0.06 -0.06 2.46 71.24 0.17 0.11 16 18 O -0.56 -1.98 12.88 -148.98 -1.92 -3.90 16 19 Si 0.80 -5.47 29.86 68.60 2.05 -3.42 16 20 C 0.42 3.47 6.98 25.67 0.18 3.65 16 21 O -0.50 -8.37 16.93 -5.05 -0.09 -8.46 16 22 C -0.23 -0.98 5.89 -20.01 -0.12 -1.10 16 23 C -0.01 -0.04 9.40 22.46 0.21 0.17 16 24 C -0.12 -0.18 6.22 22.32 0.14 -0.04 16 25 Br -0.02 -0.03 33.69 -20.37 -0.69 -0.72 16 26 C -0.01 0.01 9.10 22.32 0.20 0.21 16 27 C -0.10 0.47 5.19 32.14 0.17 0.64 16 28 C -0.12 0.70 5.55 32.15 0.18 0.88 16 29 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 30 H 0.05 0.16 7.06 -2.38 -0.02 0.15 16 31 H 0.06 -0.12 5.46 -2.39 -0.01 -0.13 16 32 H 0.06 -0.10 5.42 -2.39 -0.01 -0.11 16 33 H 0.05 0.17 7.07 -2.39 -0.02 0.15 16 34 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 35 H 0.11 -0.72 8.14 -2.38 -0.02 -0.74 16 36 H 0.08 -0.59 7.84 -2.39 -0.02 -0.61 16 37 H 0.07 -0.43 7.52 -2.39 -0.02 -0.45 16 38 H 0.06 -0.25 7.33 -2.39 -0.02 -0.26 16 39 H 0.09 -0.56 7.83 -2.39 -0.02 -0.58 16 40 H 0.10 -0.47 8.13 -2.39 -0.02 -0.49 16 41 H 0.10 -0.41 8.13 -2.39 -0.02 -0.43 16 42 H 0.25 -4.18 4.77 -2.91 -0.01 -4.20 16 43 H 0.09 0.56 7.96 -2.39 -0.02 0.54 16 44 H 0.39 -2.77 8.70 -74.05 -0.64 -3.42 16 45 H -0.26 1.25 7.11 99.48 0.71 1.96 16 46 H -0.30 -0.65 7.11 99.48 0.71 0.06 16 47 H 0.14 0.89 7.81 -2.91 -0.02 0.87 16 48 H 0.17 -0.74 6.96 -2.91 -0.02 -0.76 16 49 H 0.06 -0.22 7.29 -2.39 -0.02 -0.24 16 50 H 0.09 -0.53 7.82 -2.39 -0.02 -0.55 16 51 H 0.07 -0.41 7.52 -2.39 -0.02 -0.42 16 52 H 0.08 -0.59 7.84 -2.39 -0.02 -0.60 16 Total: 0.00 -23.85 426.88 3.66 -20.18 By element: Atomic # 1 Polarization: -10.91 SS G_CDS: 0.39 Total: -10.52 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 4.08 Total: 8.31 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: -2.17 Total: -13.84 kcal Atomic # 14 Polarization: -5.47 SS G_CDS: 2.05 Total: -3.42 kcal Atomic # 35 Polarization: -0.03 SS G_CDS: -0.69 Total: -0.72 kcal Total: -23.85 3.66 -20.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13758428_484008.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.747 kcal (2) G-P(sol) polarization free energy of solvation -23.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds