Wall clock time and date at job start Sat Mar 6 2021 05:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21279 * 120.00662 * 2 1 4 4 N 1.34777 * 119.99779 * 180.02562 * 2 1 3 5 5 C 1.46508 * 120.00013 * 179.97438 * 4 2 1 6 6 H 1.08996 * 109.46770 * 35.00050 * 5 4 2 7 7 C 1.53003 * 109.46692 * 154.99917 * 5 4 2 8 8 C 1.53000 * 109.47298 * 60.00343 * 7 5 4 9 9 C 1.53005 * 109.47148 * 59.99365 * 8 7 5 10 10 H 1.09003 * 109.46727 * 60.00443 * 9 8 7 11 11 C 1.50703 * 109.47031 * 180.02562 * 9 8 7 12 12 O 1.20822 * 119.99880 * 359.97438 * 11 9 8 13 13 O 1.34222 * 119.99989 * 180.02562 * 11 9 8 14 14 C 1.45200 * 117.00098 * 179.97438 * 13 11 9 15 15 C 1.50706 * 109.46954 * 179.97438 * 14 13 11 16 16 C 1.38940 * 120.03567 * 179.97438 * 15 14 13 17 17 O 1.34885 * 120.98616 * 359.95600 * 16 15 14 18 18 C 1.33713 * 122.40361 * 179.97438 * 17 16 15 19 19 C 1.34538 * 122.86210 * 0.05000 * 18 17 16 20 20 C 1.50701 * 120.20343 * 179.97438 * 19 18 17 21 21 O 1.42905 * 109.46956 * 249.97318 * 20 19 18 22 22 Si 1.86296 * 109.47178 * 9.97493 * 20 19 18 23 23 C 1.42002 * 119.59228 * 359.97177 * 19 18 17 24 24 O 1.21923 * 121.40229 * 179.97438 * 23 19 18 25 25 C 1.40449 * 119.33382 * 179.97438 * 16 15 14 26 26 C 1.39346 * 120.24223 * 0.02562 * 25 16 15 27 27 C 1.37885 * 119.52405 * 359.97438 * 26 25 16 28 28 Br 1.89102 * 119.86165 * 179.97438 * 27 26 25 29 29 C 1.37865 * 120.04194 * 359.72653 * 15 14 13 30 30 C 1.52996 * 109.47221 * 300.00163 * 9 8 7 31 31 C 1.52995 * 109.46907 * 274.99826 * 5 4 2 32 32 H 1.09002 * 109.47358 * 240.00051 * 1 2 3 33 33 H 1.09007 * 109.46819 * 0.02562 * 1 2 3 34 34 H 1.08997 * 109.46934 * 119.99441 * 1 2 3 35 35 H 0.97005 * 120.00175 * 0.02562 * 4 2 1 36 36 H 1.08999 * 109.47271 * 300.00055 * 7 5 4 37 37 H 1.09003 * 109.46181 * 180.02562 * 7 5 4 38 38 H 1.09003 * 109.46945 * 299.99941 * 8 7 5 39 39 H 1.08998 * 109.47020 * 179.97438 * 8 7 5 40 40 H 1.09000 * 109.46633 * 59.99864 * 14 13 11 41 41 H 1.09000 * 109.47147 * 299.99661 * 14 13 11 42 42 H 1.07999 * 118.56811 * 180.02562 * 18 17 16 43 43 H 1.08999 * 109.46942 * 129.97180 * 20 19 18 44 44 H 0.96697 * 113.99737 * 180.02562 * 21 20 19 45 45 H 1.48503 * 109.99863 * 300.00198 * 22 20 19 46 46 H 1.48500 * 110.00242 * 61.31794 * 22 20 19 47 47 H 1.08008 * 120.24158 * 180.02562 * 26 25 16 48 48 H 1.07999 * 119.65075 * 0.02562 * 29 15 14 49 49 H 1.08999 * 109.46952 * 179.97438 * 30 9 8 50 50 H 1.08994 * 109.47190 * 299.99807 * 30 9 8 51 51 H 1.09003 * 109.47168 * 60.00560 * 31 5 4 52 52 H 1.09003 * 109.47145 * 179.97438 * 31 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6459 -1.1673 -0.0011 6 1 4.0094 -0.3256 0.5884 7 6 4.1560 -2.4748 0.6081 8 6 3.6456 -3.6563 -0.2194 9 6 4.1551 -3.5302 -1.6566 10 1 5.2451 -3.5303 -1.6570 11 6 3.6519 -4.6936 -2.4718 12 8 2.9575 -5.5372 -1.9560 13 8 3.9760 -4.7931 -3.7705 14 6 3.4565 -5.9401 -4.4935 15 6 3.9203 -5.8829 -5.9263 16 6 3.5474 -6.8807 -6.8184 17 8 2.7713 -7.9107 -6.4234 18 6 2.3953 -8.8857 -7.2577 19 6 2.7593 -8.9193 -8.5525 20 6 2.3013 -10.0480 -9.4397 21 8 3.4168 -10.8787 -9.7678 22 14 1.0163 -11.0583 -8.5459 23 6 3.5777 -7.8846 -9.0779 24 8 3.9275 -7.8825 -10.2459 25 6 3.9876 -6.8124 -8.1503 26 6 4.7906 -5.7541 -8.5708 27 6 5.1495 -4.7739 -7.6699 28 35 6.2395 -3.3337 -8.2300 29 6 4.7108 -4.8378 -6.3546 30 6 3.6449 -2.2227 -2.2657 31 6 4.1553 -1.0413 -1.4382 32 1 -0.3634 -0.5138 0.8900 33 1 -0.3633 1.0277 -0.0005 34 1 -0.3633 -0.5137 -0.8900 35 1 1.6958 -2.0073 -0.0013 36 1 3.7930 -2.5646 1.6319 37 1 5.2460 -2.4746 0.6080 38 1 2.5556 -3.6562 -0.2190 39 1 4.0094 -4.5877 0.2144 40 1 2.3670 -5.9252 -4.4638 41 1 3.8202 -6.8571 -4.0299 42 1 1.7726 -9.6809 -6.8754 43 1 1.8709 -9.6397 -10.3541 44 1 3.1953 -11.6273 -10.3384 45 1 1.5907 -11.6206 -7.2972 46 1 -0.1626 -10.2135 -8.2271 47 1 5.1288 -5.7014 -9.5952 48 1 4.9951 -4.0626 -5.6584 49 1 4.0083 -2.1328 -3.2894 50 1 2.5550 -2.2227 -2.2653 51 1 3.7919 -0.1098 -1.8722 52 1 5.2453 -1.0409 -1.4387 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13824706_484008.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:52:04 Heat of formation + Delta-G solvation = -163.766740 kcal Electronic energy + Delta-G solvation = -40242.560781 eV Core-core repulsion = 34800.277940 eV Total energy + Delta-G solvation = -5442.282841 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 480.075 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -43.46685 -42.02440 -40.99358 -40.26067 -39.96466 -38.96099 -37.83811 -37.63391 -34.94481 -34.76128 -33.80646 -33.26997 -32.02299 -31.84887 -30.80593 -29.77730 -28.33915 -27.52895 -26.11647 -24.96943 -24.39670 -23.73127 -22.62135 -22.26047 -21.78589 -20.75912 -20.18607 -19.73242 -18.87381 -18.59938 -18.52296 -18.08757 -17.95239 -17.74804 -17.51817 -16.90870 -16.80838 -16.57655 -16.48718 -16.36477 -15.76679 -15.68372 -15.56987 -15.37722 -15.27952 -15.13702 -14.83777 -14.71017 -14.64894 -14.34862 -14.11396 -13.92005 -13.78509 -13.65387 -13.57393 -13.26948 -13.22762 -13.04543 -12.99146 -12.89277 -12.72379 -12.33545 -12.18388 -12.07273 -12.03812 -11.89926 -11.63380 -11.56282 -11.42533 -11.26287 -11.17956 -10.93538 -10.81709 -10.51226 -10.32570 -10.05968 -9.67837 -5.00498 -0.97048 -0.80884 -0.10343 0.27096 0.83100 1.06687 1.16105 1.29897 1.33006 1.62064 1.65082 1.77015 2.16416 2.31147 2.56647 2.75821 2.99656 3.11222 3.36549 3.48547 3.55341 3.61698 3.65126 3.69150 3.83223 3.89966 3.91456 3.95670 4.00506 4.03982 4.04866 4.10634 4.13664 4.22236 4.34153 4.42168 4.44038 4.48584 4.51652 4.54080 4.57959 4.62701 4.65380 4.68751 4.80481 4.94247 4.96489 5.07548 5.08341 5.10563 5.14474 5.26694 5.29621 5.31382 5.57497 5.59753 6.18189 6.56461 6.58177 6.82832 7.27361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.504 3.496 3 O -0.599 6.599 4 N -0.715 5.715 5 C 0.137 3.863 6 H 0.071 0.929 7 C -0.116 4.116 8 C -0.103 4.103 9 C -0.073 4.073 10 H 0.135 0.865 11 C 0.472 3.528 12 O -0.527 6.527 13 O -0.351 6.351 14 C 0.118 3.882 15 C -0.098 4.098 16 C 0.160 3.840 17 O -0.205 6.205 18 C 0.149 3.851 19 C -0.293 4.293 20 C -0.073 4.073 21 O -0.567 6.567 22 Si 0.781 3.219 23 C 0.425 3.575 24 O -0.484 6.484 25 C -0.227 4.227 26 C -0.006 4.006 27 C -0.119 4.119 28 Br -0.020 7.020 29 C -0.004 4.004 30 C -0.103 4.103 31 C -0.124 4.124 32 H 0.108 0.892 33 H 0.082 0.918 34 H 0.107 0.893 35 H 0.411 0.589 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.220 0.780 43 H 0.074 0.926 44 H 0.403 0.597 45 H -0.260 1.260 46 H -0.265 1.265 47 H 0.149 0.851 48 H 0.180 0.820 49 H 0.085 0.915 50 H 0.064 0.936 51 H 0.052 0.948 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.134 -5.414 3.492 7.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.293 3.707 3 O -0.481 6.481 4 N -0.368 5.368 5 C 0.033 3.967 6 H 0.089 0.911 7 C -0.154 4.154 8 C -0.140 4.140 9 C -0.092 4.092 10 H 0.152 0.848 11 C 0.317 3.683 12 O -0.416 6.416 13 O -0.267 6.267 14 C 0.045 3.955 15 C -0.099 4.099 16 C 0.114 3.886 17 O -0.109 6.109 18 C 0.084 3.916 19 C -0.295 4.295 20 C -0.180 4.180 21 O -0.377 6.377 22 Si 0.680 3.320 23 C 0.311 3.689 24 O -0.367 6.367 25 C -0.230 4.230 26 C -0.026 4.026 27 C -0.199 4.199 28 Br 0.066 6.934 29 C -0.024 4.024 30 C -0.141 4.141 31 C -0.163 4.163 32 H 0.127 0.873 33 H 0.101 0.899 34 H 0.125 0.875 35 H 0.249 0.751 36 H 0.100 0.900 37 H 0.116 0.884 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.236 0.764 43 H 0.092 0.908 44 H 0.254 0.746 45 H -0.186 1.186 46 H -0.190 1.190 47 H 0.167 0.833 48 H 0.197 0.803 49 H 0.103 0.897 50 H 0.082 0.918 51 H 0.071 0.929 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.537 -4.061 4.123 6.782 hybrid contribution -0.030 -0.256 -0.736 0.780 sum -3.566 -4.317 3.387 6.544 Atomic orbital electron populations 1.21952 0.89290 1.05744 1.06173 1.21424 0.91933 0.83174 0.74181 1.90716 1.72065 1.33329 1.51943 1.46178 1.07399 1.08732 1.74508 1.21027 0.79872 0.99085 0.96761 0.91070 1.21788 1.02874 0.91340 0.99367 1.21442 1.01503 0.99328 0.91767 1.21262 1.04317 0.89959 0.93680 0.84766 1.24244 0.76864 0.87060 0.80176 1.90705 1.36523 1.42482 1.71862 1.86408 1.69792 1.46312 1.24216 1.21512 0.99915 0.88201 0.85902 1.18855 1.02427 0.94089 0.94538 1.18980 0.91014 0.86920 0.91684 1.83127 1.57694 1.29544 1.40487 1.24117 0.91851 0.87439 0.88182 1.21276 1.09319 1.02608 0.96311 1.24815 0.96910 0.93682 1.02597 1.86447 1.34480 1.43540 1.73262 0.93022 0.74482 0.84423 0.80075 1.18682 0.78753 0.83882 0.87581 1.90723 1.51157 1.76151 1.18637 1.20717 1.06845 1.01010 0.94443 1.21137 0.91407 0.89613 1.00399 1.21886 1.04248 0.97421 0.96366 1.96854 1.65115 1.40778 1.90645 1.21257 0.90949 0.96428 0.93718 1.21447 1.01166 0.91378 1.00079 1.21865 1.02247 0.97593 0.94581 0.87302 0.89884 0.87480 0.75095 0.90018 0.88374 0.91217 0.90354 0.88247 0.88350 0.76446 0.90753 0.74589 1.18597 1.18999 0.83291 0.80293 0.89677 0.91773 0.92876 0.88904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.85 10.32 71.23 0.74 1.59 16 2 C 0.50 1.06 7.90 87.66 0.69 1.75 16 3 O -0.60 -7.61 16.75 -3.03 -0.05 -7.67 16 4 N -0.71 2.68 4.23 -442.53 -1.87 0.80 16 5 C 0.14 -0.51 2.78 44.99 0.13 -0.39 16 6 H 0.07 0.09 7.58 -2.39 -0.02 0.07 16 7 C -0.12 0.97 5.61 30.60 0.17 1.14 16 8 C -0.10 0.78 4.32 30.60 0.13 0.91 16 9 C -0.07 0.55 2.63 -11.54 -0.03 0.52 16 10 H 0.13 -1.47 8.14 -2.39 -0.02 -1.49 16 11 C 0.47 -1.17 7.25 71.24 0.52 -0.65 16 12 O -0.53 -1.70 15.73 21.98 0.35 -1.35 16 13 O -0.35 1.17 8.58 -51.34 -0.44 0.73 16 14 C 0.12 -0.33 5.38 71.24 0.38 0.05 16 15 C -0.10 0.08 5.89 -19.78 -0.12 -0.04 16 16 C 0.16 0.36 6.74 22.98 0.15 0.52 16 17 O -0.21 -0.03 9.21 -2.73 -0.03 -0.06 16 18 C 0.15 -0.03 9.99 66.97 0.67 0.64 16 19 C -0.29 -1.44 5.35 -19.78 -0.11 -1.55 16 20 C -0.07 -0.06 2.45 71.24 0.17 0.12 16 21 O -0.57 -1.60 12.86 -148.98 -1.92 -3.51 16 22 Si 0.78 -5.55 30.02 68.60 2.06 -3.49 16 23 C 0.43 4.43 6.98 25.67 0.18 4.61 16 24 O -0.48 -8.15 16.93 -5.06 -0.09 -8.23 16 25 C -0.23 -1.46 5.89 -20.01 -0.12 -1.58 16 26 C -0.01 -0.03 9.40 22.45 0.21 0.18 16 27 C -0.12 -0.22 6.22 22.32 0.14 -0.08 16 28 Br -0.02 -0.03 33.69 -20.37 -0.69 -0.71 16 29 C 0.00 0.01 9.10 22.31 0.20 0.21 16 30 C -0.10 0.69 4.98 30.59 0.15 0.85 16 31 C -0.12 0.56 5.60 30.59 0.17 0.73 16 32 H 0.11 -0.98 8.14 -2.39 -0.02 -0.99 16 33 H 0.08 -0.19 8.12 -2.38 -0.02 -0.21 16 34 H 0.11 -0.94 8.14 -2.39 -0.02 -0.96 16 35 H 0.41 -3.44 6.87 -92.70 -0.64 -4.08 16 36 H 0.08 -0.67 8.14 -2.39 -0.02 -0.69 16 37 H 0.10 -1.03 8.14 -2.39 -0.02 -1.05 16 38 H 0.07 -0.49 6.46 -2.39 -0.02 -0.50 16 39 H 0.08 -0.50 8.10 -2.39 -0.02 -0.52 16 40 H 0.10 -0.35 8.13 -2.39 -0.02 -0.37 16 41 H 0.10 -0.31 8.13 -2.39 -0.02 -0.33 16 42 H 0.22 -1.32 4.64 -2.91 -0.01 -1.33 16 43 H 0.07 0.08 7.96 -2.39 -0.02 0.06 16 44 H 0.40 -3.21 8.74 -74.06 -0.65 -3.86 16 45 H -0.26 1.10 6.91 99.48 0.69 1.79 16 46 H -0.26 1.05 7.11 99.48 0.71 1.76 16 47 H 0.15 0.90 7.81 -2.91 -0.02 0.88 16 48 H 0.18 -0.88 6.96 -2.91 -0.02 -0.90 16 49 H 0.08 -0.62 8.11 -2.39 -0.02 -0.64 16 50 H 0.06 -0.35 7.60 -2.39 -0.02 -0.37 16 51 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 52 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 Total: 0.00 -29.85 449.02 1.52 -28.33 By element: Atomic # 1 Polarization: -14.13 SS G_CDS: -0.25 Total: -14.38 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 4.44 Total: 9.54 kcal Atomic # 7 Polarization: 2.68 SS G_CDS: -1.87 Total: 0.80 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -2.17 Total: -20.09 kcal Atomic # 14 Polarization: -5.55 SS G_CDS: 2.06 Total: -3.49 kcal Atomic # 35 Polarization: -0.03 SS G_CDS: -0.69 Total: -0.71 kcal Total: -29.85 1.52 -28.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13824706_484008.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.436 kcal (2) G-P(sol) polarization free energy of solvation -29.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds