Wall clock time and date at job start Sat Mar 6 2021 06:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21273 * 120.00361 * 2 1 4 4 N 1.34780 * 119.99941 * 180.02562 * 2 1 3 5 5 C 1.46492 * 120.00132 * 179.97438 * 4 2 1 6 6 H 1.09000 * 109.47152 * 34.99769 * 5 4 2 7 7 C 1.53006 * 109.47363 * 154.99846 * 5 4 2 8 8 C 1.52997 * 109.47164 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47415 * 300.00027 * 8 7 5 10 10 H 1.08996 * 109.46550 * 300.00288 * 9 8 7 11 11 C 1.50697 * 109.47106 * 179.97438 * 9 8 7 12 12 O 1.20828 * 120.00136 * 0.02562 * 11 9 8 13 13 O 1.34234 * 119.99749 * 179.97438 * 11 9 8 14 14 C 1.45198 * 116.99943 * 180.02562 * 13 11 9 15 15 C 1.50696 * 109.47024 * 180.02562 * 14 13 11 16 16 C 1.38944 * 120.03940 * 180.02562 * 15 14 13 17 17 O 1.34884 * 120.99112 * 0.02562 * 16 15 14 18 18 C 1.33721 * 122.40614 * 179.97438 * 17 16 15 19 19 C 1.34534 * 122.86230 * 0.02562 * 18 17 16 20 20 C 1.50698 * 120.20277 * 179.97438 * 19 18 17 21 21 O 1.42898 * 109.47064 * 249.99866 * 20 19 18 22 22 Si 1.86297 * 109.47263 * 9.99879 * 20 19 18 23 23 C 1.41999 * 119.59144 * 359.97438 * 19 18 17 24 24 O 1.21924 * 121.40679 * 180.02562 * 23 19 18 25 25 C 1.40455 * 119.33691 * 180.02562 * 16 15 14 26 26 C 1.39343 * 120.23717 * 359.96624 * 25 16 15 27 27 C 1.37889 * 119.52854 * 0.02562 * 26 25 16 28 28 Br 1.89100 * 119.86393 * 180.02562 * 27 26 25 29 29 C 1.37864 * 120.04339 * 359.71717 * 15 14 13 30 30 C 1.52996 * 109.46972 * 59.99860 * 9 8 7 31 31 C 1.52997 * 109.47165 * 300.00293 * 30 9 8 32 32 H 1.09007 * 109.47167 * 239.99505 * 1 2 3 33 33 H 1.08995 * 109.47358 * 359.97438 * 1 2 3 34 34 H 1.09000 * 109.47591 * 119.99535 * 1 2 3 35 35 H 0.97006 * 119.99905 * 359.97438 * 4 2 1 36 36 H 1.09001 * 109.46998 * 299.99569 * 7 5 4 37 37 H 1.09000 * 109.47050 * 59.99860 * 7 5 4 38 38 H 1.09000 * 109.47140 * 60.00051 * 8 7 5 39 39 H 1.09001 * 109.47230 * 179.97438 * 8 7 5 40 40 H 1.09004 * 109.46685 * 300.00182 * 14 13 11 41 41 H 1.09002 * 109.47319 * 59.99602 * 14 13 11 42 42 H 1.08002 * 118.56513 * 180.02562 * 18 17 16 43 43 H 1.09004 * 109.47304 * 130.00476 * 20 19 18 44 44 H 0.96698 * 114.00411 * 59.99783 * 21 20 19 45 45 H 1.48500 * 109.99839 * 58.68199 * 22 20 19 46 46 H 1.48504 * 110.00044 * 179.97438 * 22 20 19 47 47 H 1.08009 * 120.23521 * 179.97438 * 26 25 16 48 48 H 1.08002 * 119.64474 * 0.02562 * 29 15 14 49 49 H 1.09000 * 109.47054 * 60.00300 * 30 9 8 50 50 H 1.09001 * 109.46997 * 180.02562 * 30 9 8 51 51 H 1.09000 * 109.47140 * 299.99954 * 31 30 9 52 52 H 1.09002 * 109.47045 * 180.02562 * 31 30 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6458 -1.1673 -0.0011 6 1 4.0094 -0.3256 0.5884 7 6 4.1560 -2.4748 0.6081 8 6 5.6860 -2.4751 0.6069 9 6 6.1950 -2.3494 -0.8305 10 1 5.8310 -3.1911 -1.4196 11 6 7.7020 -2.3490 -0.8315 12 8 8.3069 -2.4404 0.2104 13 8 8.3722 -2.2482 -1.9902 14 6 9.8223 -2.2550 -1.9156 15 6 10.3972 -2.1335 -3.3032 16 6 11.7744 -2.1182 -3.4867 17 8 12.6160 -2.2114 -2.4367 18 6 13.9454 -2.2001 -2.5806 19 6 14.5491 -2.0949 -3.7782 20 6 16.0532 -2.0877 -3.8709 21 8 16.5010 -0.7839 -4.2472 22 14 16.7796 -2.5403 -2.2162 23 6 13.7604 -1.9907 -4.9544 24 8 14.2728 -1.8943 -6.0565 25 6 12.2943 -2.0039 -4.7864 26 6 11.4357 -1.9076 -5.8797 27 6 10.0720 -1.9248 -5.6763 28 35 8.8981 -1.7954 -7.1532 29 6 9.5574 -2.0438 -4.3929 30 6 5.6848 -1.0419 -1.4396 31 6 4.1548 -1.0417 -1.4384 32 1 -0.3634 -0.5139 0.8900 33 1 -0.3634 1.0276 0.0005 34 1 -0.3634 -0.5137 -0.8900 35 1 1.6958 -2.0073 -0.0005 36 1 3.7932 -2.5645 1.6320 37 1 3.7925 -3.3165 0.0186 38 1 6.0500 -1.6334 1.1961 39 1 6.0495 -3.4064 1.0413 40 1 10.1588 -1.4146 -1.3084 41 1 10.1585 -3.1878 -1.4629 42 1 14.5612 -2.2789 -1.6968 43 1 16.3746 -2.8122 -4.6193 44 1 16.2502 -0.0872 -3.6253 45 1 16.2962 -3.8810 -1.7989 46 1 18.2626 -2.5374 -2.2945 47 1 11.8355 -1.8192 -6.8791 48 1 8.4876 -2.0607 -4.2456 49 1 6.0487 -0.2002 -0.8504 50 1 6.0470 -0.9526 -2.4638 51 1 3.7908 -1.8834 -2.0277 52 1 3.7913 -0.1104 -1.8728 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_13969758_484008.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 06:30:45 Heat of formation + Delta-G solvation = -172.404914 kcal Electronic energy + Delta-G solvation = -39716.816277 eV Core-core repulsion = 34274.158856 eV Total energy + Delta-G solvation = -5442.657421 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 480.075 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -43.34983 -41.90658 -40.86009 -40.17847 -39.91849 -38.93095 -37.90761 -37.58466 -35.28597 -34.62544 -33.68830 -33.15803 -31.90483 -31.78565 -30.73893 -29.69795 -28.18301 -27.48283 -25.95038 -24.76682 -24.41935 -23.78799 -22.55370 -22.04617 -21.50506 -20.86647 -20.61989 -19.55459 -19.06832 -18.52382 -18.00920 -17.89579 -17.74717 -17.55558 -17.41992 -17.31984 -16.76975 -16.45099 -16.26813 -16.20618 -16.07707 -15.54271 -15.50204 -15.33930 -15.27139 -15.14575 -14.78603 -14.64809 -14.49688 -14.23563 -14.12994 -13.98777 -13.90205 -13.66513 -13.45910 -13.25270 -13.22574 -12.96945 -12.78226 -12.59180 -12.43780 -12.34480 -12.26467 -12.14269 -12.09707 -11.81858 -11.54131 -11.53020 -11.47203 -11.31359 -11.27825 -10.87199 -10.70884 -10.45040 -10.41740 -10.03562 -9.59226 -5.14407 -0.85946 -0.71061 0.03242 0.33022 0.96699 1.11826 1.15506 1.39406 1.39787 1.58204 1.67413 1.96261 2.26760 2.29635 2.67519 2.85490 3.18725 3.31603 3.43880 3.51825 3.59033 3.63948 3.65577 3.73984 3.86133 3.95239 3.97443 4.00681 4.10337 4.12726 4.15179 4.19877 4.26886 4.31335 4.34115 4.37771 4.47635 4.53784 4.55018 4.61557 4.64163 4.68671 4.69864 4.77832 4.82463 4.96781 5.01992 5.08500 5.11803 5.13656 5.16455 5.29465 5.32176 5.37390 5.57884 5.74241 6.30793 6.62502 6.64039 6.75218 7.32326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.502 3.498 3 O -0.603 6.603 4 N -0.715 5.715 5 C 0.137 3.863 6 H 0.058 0.942 7 C -0.114 4.114 8 C -0.100 4.100 9 C -0.073 4.073 10 H 0.141 0.859 11 C 0.473 3.527 12 O -0.528 6.528 13 O -0.351 6.351 14 C 0.116 3.884 15 C -0.096 4.096 16 C 0.166 3.834 17 O -0.201 6.201 18 C 0.179 3.821 19 C -0.341 4.341 20 C -0.063 4.063 21 O -0.558 6.558 22 Si 0.802 3.198 23 C 0.423 3.577 24 O -0.498 6.498 25 C -0.227 4.227 26 C -0.010 4.010 27 C -0.121 4.121 28 Br -0.025 7.025 29 C -0.007 4.007 30 C -0.105 4.105 31 C -0.121 4.121 32 H 0.110 0.890 33 H 0.079 0.921 34 H 0.111 0.889 35 H 0.419 0.581 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.058 0.942 39 H 0.082 0.918 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.247 0.753 43 H 0.089 0.911 44 H 0.395 0.605 45 H -0.257 1.257 46 H -0.296 1.296 47 H 0.143 0.857 48 H 0.177 0.823 49 H 0.057 0.943 50 H 0.091 0.909 51 H 0.091 0.909 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.086 -4.881 7.245 11.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.291 3.709 3 O -0.484 6.484 4 N -0.367 5.367 5 C 0.032 3.968 6 H 0.076 0.924 7 C -0.151 4.151 8 C -0.138 4.138 9 C -0.092 4.092 10 H 0.158 0.842 11 C 0.317 3.683 12 O -0.417 6.417 13 O -0.268 6.268 14 C 0.043 3.957 15 C -0.098 4.098 16 C 0.120 3.880 17 O -0.103 6.103 18 C 0.113 3.887 19 C -0.344 4.344 20 C -0.170 4.170 21 O -0.366 6.366 22 Si 0.703 3.297 23 C 0.310 3.690 24 O -0.381 6.381 25 C -0.229 4.229 26 C -0.030 4.030 27 C -0.200 4.200 28 Br 0.061 6.939 29 C -0.027 4.027 30 C -0.143 4.143 31 C -0.159 4.159 32 H 0.129 0.871 33 H 0.098 0.902 34 H 0.130 0.870 35 H 0.256 0.744 36 H 0.099 0.901 37 H 0.117 0.883 38 H 0.077 0.923 39 H 0.101 0.899 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.262 0.738 43 H 0.107 0.893 44 H 0.244 0.756 45 H -0.183 1.183 46 H -0.224 1.224 47 H 0.161 0.839 48 H 0.195 0.805 49 H 0.075 0.925 50 H 0.110 0.890 51 H 0.110 0.890 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.035 -4.977 6.559 10.209 hybrid contribution 0.614 -0.192 -1.046 1.228 sum -5.421 -5.168 5.513 9.300 Atomic orbital electron populations 1.21940 0.88842 1.05683 1.06435 1.21526 0.92110 0.83155 0.74086 1.90721 1.72179 1.33554 1.51995 1.46035 1.07011 1.09073 1.74595 1.21027 0.79864 0.99127 0.96749 0.92356 1.21737 0.94423 0.96430 1.02552 1.21376 0.95146 1.03636 0.93662 1.21260 0.84703 1.02692 1.00525 0.84158 1.24182 0.92259 0.71132 0.80745 1.90707 1.70995 1.46062 1.33916 1.86403 1.21169 1.83721 1.35514 1.21575 0.76744 1.05182 0.92197 1.18857 0.88191 1.06518 0.96214 1.18868 0.88914 0.96000 0.84207 1.83171 1.16544 1.76410 1.34189 1.24427 0.79410 0.85690 0.99127 1.21964 0.99941 1.18190 0.94310 1.25216 0.89582 0.88830 1.13356 1.86549 1.78675 1.16929 1.54464 0.94450 0.78359 0.82195 0.74740 1.18800 0.87245 0.73477 0.89517 1.90752 1.76091 1.41558 1.29691 1.20730 0.96623 1.12150 0.93433 1.21113 0.91139 0.91402 0.99379 1.21861 0.93585 1.10226 0.94356 1.96844 1.60644 1.97197 1.39260 1.21242 1.02300 0.90982 0.88139 1.21459 0.95541 0.94936 1.02354 1.21839 0.94675 1.02891 0.96524 0.87148 0.90164 0.87017 0.74378 0.90130 0.88331 0.92295 0.89941 0.88033 0.87912 0.73769 0.89312 0.75564 1.18341 1.22359 0.83894 0.80522 0.92467 0.89012 0.89044 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 1.12 10.32 71.23 0.74 1.85 16 2 C 0.50 0.58 7.90 87.66 0.69 1.27 16 3 O -0.60 -7.64 16.75 -3.01 -0.05 -7.69 16 4 N -0.71 3.88 5.08 -442.55 -2.25 1.63 16 5 C 0.14 -0.54 2.46 44.99 0.11 -0.43 16 6 H 0.06 0.17 7.58 -2.39 -0.02 0.16 16 7 C -0.11 1.02 5.39 30.60 0.16 1.18 16 8 C -0.10 0.60 4.49 30.59 0.14 0.74 16 9 C -0.07 0.52 2.63 -11.54 -0.03 0.49 16 10 H 0.14 -1.69 8.14 -2.39 -0.02 -1.71 16 11 C 0.47 -1.04 7.25 71.23 0.52 -0.53 16 12 O -0.53 -2.05 15.73 21.96 0.35 -1.70 16 13 O -0.35 1.41 8.58 -51.45 -0.44 0.97 16 14 C 0.12 -0.54 5.38 71.23 0.38 -0.15 16 15 C -0.10 0.28 5.89 -19.79 -0.12 0.16 16 16 C 0.17 -0.18 6.74 22.98 0.15 -0.02 16 17 O -0.20 1.11 9.21 -2.79 -0.03 1.08 16 18 C 0.18 -1.37 9.99 66.97 0.67 -0.70 16 19 C -0.34 -0.12 5.32 -19.78 -0.11 -0.22 16 20 C -0.06 -0.06 2.46 71.24 0.17 0.11 16 21 O -0.56 -2.09 12.88 -148.98 -1.92 -4.01 16 22 Si 0.80 -5.49 29.86 68.60 2.05 -3.44 16 23 C 0.42 3.46 6.98 25.67 0.18 3.64 16 24 O -0.50 -8.43 16.93 -5.07 -0.09 -8.52 16 25 C -0.23 -0.95 5.89 -20.01 -0.12 -1.06 16 26 C -0.01 -0.05 9.40 22.45 0.21 0.17 16 27 C -0.12 -0.13 6.22 22.32 0.14 0.00 16 28 Br -0.03 -0.03 33.69 -20.37 -0.69 -0.72 16 29 C -0.01 0.02 9.10 22.31 0.20 0.22 16 30 C -0.10 0.59 5.13 30.59 0.16 0.75 16 31 C -0.12 0.59 5.49 30.59 0.17 0.75 16 32 H 0.11 -1.19 8.14 -2.38 -0.02 -1.21 16 33 H 0.08 -0.27 8.12 -2.39 -0.02 -0.29 16 34 H 0.11 -1.24 8.14 -2.39 -0.02 -1.26 16 35 H 0.42 -5.24 8.60 -92.70 -0.80 -6.04 16 36 H 0.08 -0.70 8.14 -2.39 -0.02 -0.72 16 37 H 0.10 -1.32 8.14 -2.39 -0.02 -1.34 16 38 H 0.06 -0.11 8.10 -2.39 -0.02 -0.13 16 39 H 0.08 -0.48 8.10 -2.39 -0.02 -0.50 16 40 H 0.10 -0.54 8.13 -2.39 -0.02 -0.56 16 41 H 0.10 -0.58 8.13 -2.39 -0.02 -0.60 16 42 H 0.25 -4.25 4.77 -2.91 -0.01 -4.27 16 43 H 0.09 0.56 7.96 -2.38 -0.02 0.55 16 44 H 0.39 -2.68 8.70 -74.06 -0.64 -3.32 16 45 H -0.26 1.30 7.11 99.48 0.71 2.01 16 46 H -0.30 -0.64 7.11 99.48 0.71 0.06 16 47 H 0.14 0.89 7.81 -2.91 -0.02 0.87 16 48 H 0.18 -1.00 6.96 -2.91 -0.02 -1.02 16 49 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 50 H 0.09 -0.66 8.11 -2.39 -0.02 -0.68 16 51 H 0.09 -0.81 8.14 -2.39 -0.02 -0.83 16 52 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 Total: 0.00 -36.09 453.57 0.97 -35.12 By element: Atomic # 1 Polarization: -20.56 SS G_CDS: -0.39 Total: -20.95 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: 4.43 Total: 8.22 kcal Atomic # 7 Polarization: 3.88 SS G_CDS: -2.25 Total: 1.63 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -2.18 Total: -19.86 kcal Atomic # 14 Polarization: -5.49 SS G_CDS: 2.05 Total: -3.44 kcal Atomic # 35 Polarization: -0.03 SS G_CDS: -0.69 Total: -0.72 kcal Total: -36.09 0.97 -35.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_13969758_484008.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.287 kcal (2) G-P(sol) polarization free energy of solvation -36.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds