Wall clock time and date at job start Sat Mar 6 2021 06:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86292 * 109.47183 * 2 1 4 4 C 1.50704 * 109.47130 * 120.00302 * 2 1 3 5 5 C 1.34530 * 120.20255 * 249.99847 * 4 2 1 6 6 O 1.33714 * 122.86571 * 180.02562 * 5 4 2 7 7 C 1.34889 * 122.40397 * 359.97438 * 6 5 4 8 8 C 1.38936 * 120.99007 * 179.97438 * 7 6 5 9 9 C 1.50704 * 120.04065 * 0.02562 * 8 7 6 10 10 O 1.45203 * 109.46795 * 180.02562 * 9 8 7 11 11 C 1.34227 * 116.99796 * 180.02562 * 10 9 8 12 12 O 1.20827 * 120.00038 * 0.02562 * 11 10 9 13 13 C 1.50701 * 120.00254 * 180.02562 * 11 10 9 14 14 H 1.09001 * 112.90356 * 48.74559 * 13 11 10 15 15 C 1.53773 * 113.61764 * 180.02562 * 13 11 10 16 16 C 1.53781 * 87.08257 * 139.98018 * 15 13 11 17 17 H 1.08999 * 113.61127 * 89.20266 * 16 15 13 18 18 C 1.50700 * 113.61244 * 220.01567 * 16 15 13 19 19 C 1.38235 * 120.00273 * 239.99701 * 18 16 15 20 20 C 1.38234 * 120.00220 * 179.97438 * 19 18 16 21 21 C 1.38233 * 120.00037 * 0.28719 * 20 19 18 22 22 C 1.38238 * 119.99747 * 359.50225 * 21 20 19 23 23 C 1.38234 * 120.00083 * 0.44989 * 22 21 20 24 24 C 1.53776 * 87.07857 * 334.56716 * 16 15 13 25 25 C 1.37872 * 119.91723 * 180.30549 * 8 7 6 26 26 C 1.38786 * 120.70291 * 359.48452 * 25 8 7 27 27 Br 1.89097 * 119.86363 * 180.28299 * 26 25 8 28 28 C 1.37895 * 120.27538 * 0.51289 * 26 25 8 29 29 C 1.39336 * 119.52447 * 359.75026 * 28 26 25 30 30 C 1.41995 * 120.20285 * 69.97503 * 4 2 1 31 31 O 1.21914 * 121.41083 * 0.02562 * 30 4 2 32 32 H 0.96703 * 114.00318 * 59.99436 * 1 2 3 33 33 H 1.09004 * 109.46856 * 239.99889 * 2 1 3 34 34 H 1.48498 * 110.00012 * 60.00302 * 3 2 1 35 35 H 1.48505 * 110.00080 * 181.32236 * 3 2 1 36 36 H 1.08007 * 118.56772 * 359.97438 * 5 4 2 37 37 H 1.09001 * 109.47013 * 60.00841 * 9 8 7 38 38 H 1.08996 * 109.47241 * 300.00777 * 9 8 7 39 39 H 1.09004 * 113.61287 * 25.43139 * 15 13 11 40 40 H 1.08998 * 113.69097 * 254.54292 * 15 13 11 41 41 H 1.07999 * 119.99770 * 359.97438 * 19 18 16 42 42 H 1.08002 * 119.99744 * 180.02562 * 20 19 18 43 43 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 44 44 H 1.07999 * 119.99927 * 180.28388 * 22 21 20 45 45 H 1.08002 * 120.00281 * 179.83134 * 23 22 21 46 46 H 1.09007 * 113.61390 * 139.98308 * 24 16 15 47 47 H 1.09000 * 113.61458 * 270.87808 * 24 16 15 48 48 H 1.07998 * 119.64524 * 179.74015 * 25 8 7 49 49 H 1.08003 * 120.23434 * 179.76830 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 1.2305 5 6 2.5319 -0.0171 2.2145 6 8 2.9976 -0.5928 3.3279 7 6 2.8999 -1.9195 3.5509 8 6 3.3947 -2.4870 4.7186 9 6 4.0520 -1.6183 5.7599 10 8 4.4815 -2.4417 6.8761 11 6 5.0895 -1.8162 7.8963 12 8 5.2569 -0.6202 7.8581 13 6 5.5634 -2.6056 9.0894 14 1 6.1392 -3.4886 8.8123 15 6 6.2377 -1.7440 10.1699 16 6 5.5066 -2.6123 11.2073 17 1 6.0680 -3.4961 11.5103 18 6 4.9695 -1.8303 12.3782 19 6 5.3984 -2.1222 13.6595 20 6 4.9061 -1.4045 14.7335 21 6 3.9805 -0.3988 14.5268 22 6 3.5549 -0.1040 13.2451 23 6 4.0479 -0.8210 12.1710 24 6 4.4568 -2.8904 10.1185 25 6 3.2887 -3.8467 4.9209 26 6 2.6816 -4.6589 3.9733 27 35 2.5419 -6.5198 4.2788 28 6 2.1841 -4.1152 2.8078 29 6 2.2904 -2.7431 2.5901 30 6 1.7733 -2.1158 1.3584 31 8 1.2342 -2.7765 0.4871 32 1 -0.3934 0.4418 -0.7650 33 1 1.7923 -0.5139 -0.8900 34 1 1.5616 2.4678 1.2085 35 1 3.5346 1.7702 -0.0322 36 1 2.6434 1.0511 2.0999 37 1 3.3405 -0.8713 6.1117 38 1 4.9169 -1.1190 5.3232 39 1 5.9126 -0.7035 10.1644 40 1 7.3222 -1.8483 10.1995 41 1 6.1180 -2.9111 13.8215 42 1 5.2415 -1.6324 15.7345 43 1 3.5926 0.1590 15.3663 44 1 2.8353 0.6848 13.0831 45 1 3.7134 -0.5925 11.1698 46 1 4.1035 -3.9215 10.1058 47 1 3.6448 -2.1635 10.0991 48 1 3.6785 -4.2837 5.8283 49 1 1.7152 -4.7484 2.0691 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_15070214_484008.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 06:37:51 Heat of formation + Delta-G solvation = -59.252426 kcal Electronic energy + Delta-G solvation = -37183.117739 eV Core-core repulsion = 32055.871898 eV Total energy + Delta-G solvation = -5127.245841 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 471.049 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -43.47371 -42.09781 -40.71961 -40.26722 -39.91107 -38.72714 -37.81537 -37.51348 -34.82961 -33.82205 -33.27773 -32.27465 -31.77492 -30.81038 -28.89335 -27.53348 -27.25127 -26.73560 -25.97628 -24.42912 -24.00955 -23.42544 -22.51417 -21.73783 -20.76793 -20.17503 -19.75707 -19.03686 -18.63226 -18.59287 -18.11424 -17.93762 -17.50915 -17.28120 -16.86366 -16.61011 -16.47957 -16.39142 -15.93803 -15.74945 -15.58041 -15.55647 -15.28701 -15.25261 -14.94248 -14.71652 -14.47892 -14.29313 -14.16512 -14.06343 -13.87815 -13.79180 -13.50520 -13.31525 -12.96087 -12.89497 -12.72275 -12.54711 -12.34737 -12.32420 -12.05085 -11.91289 -11.89387 -11.56728 -11.55862 -11.51342 -11.30541 -11.22846 -10.82235 -10.51705 -10.33234 -9.82943 -9.68235 -9.57210 -5.01816 -0.97535 -0.81258 -0.10944 0.26940 0.41450 0.49059 0.82593 1.03433 1.15217 1.29475 1.33169 1.61003 1.76366 2.15995 2.56266 2.75459 2.81975 2.98972 3.10371 3.30560 3.45562 3.45913 3.50773 3.63931 3.65839 3.82324 3.85176 3.90758 3.95145 3.95675 4.01604 4.03045 4.12893 4.13074 4.17222 4.21251 4.28204 4.50917 4.53036 4.54868 4.57491 4.60656 4.66901 4.68111 4.74793 4.80945 4.94245 4.95998 4.98922 5.12400 5.15980 5.23301 5.34880 5.57869 5.59270 5.63484 5.73354 6.11697 6.17538 6.57535 6.82478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.567 6.567 2 C -0.072 4.072 3 Si 0.780 3.220 4 C -0.292 4.292 5 C 0.148 3.852 6 O -0.207 6.207 7 C 0.159 3.841 8 C -0.098 4.098 9 C 0.117 3.883 10 O -0.349 6.349 11 C 0.476 3.524 12 O -0.532 6.532 13 C -0.104 4.104 14 H 0.158 0.842 15 C -0.113 4.113 16 C -0.066 4.066 17 H 0.127 0.873 18 C -0.080 4.080 19 C -0.123 4.123 20 C -0.130 4.130 21 C -0.137 4.137 22 C -0.133 4.133 23 C -0.129 4.129 24 C -0.112 4.112 25 C -0.004 4.004 26 C -0.119 4.119 27 Br -0.018 7.018 28 C -0.005 4.005 29 C -0.227 4.227 30 C 0.426 3.574 31 O -0.483 6.483 32 H 0.403 0.597 33 H 0.076 0.924 34 H -0.261 1.261 35 H -0.265 1.265 36 H 0.219 0.781 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.140 0.860 42 H 0.136 0.864 43 H 0.132 0.868 44 H 0.129 0.871 45 H 0.120 0.880 46 H 0.104 0.896 47 H 0.080 0.920 48 H 0.180 0.820 49 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.913 2.118 1.760 4.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.377 6.377 2 C -0.179 4.179 3 Si 0.680 3.320 4 C -0.295 4.295 5 C 0.083 3.917 6 O -0.110 6.110 7 C 0.113 3.887 8 C -0.100 4.100 9 C 0.043 3.957 10 O -0.265 6.265 11 C 0.320 3.680 12 O -0.420 6.420 13 C -0.123 4.123 14 H 0.175 0.825 15 C -0.150 4.150 16 C -0.084 4.084 17 H 0.145 0.855 18 C -0.080 4.080 19 C -0.141 4.141 20 C -0.147 4.147 21 C -0.155 4.155 22 C -0.151 4.151 23 C -0.147 4.147 24 C -0.150 4.150 25 C -0.023 4.023 26 C -0.199 4.199 27 Br 0.068 6.932 28 C -0.025 4.025 29 C -0.230 4.230 30 C 0.312 3.688 31 O -0.366 6.366 32 H 0.254 0.746 33 H 0.094 0.906 34 H -0.187 1.187 35 H -0.191 1.191 36 H 0.235 0.765 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.096 0.904 40 H 0.111 0.889 41 H 0.158 0.842 42 H 0.154 0.846 43 H 0.150 0.850 44 H 0.147 0.853 45 H 0.138 0.862 46 H 0.123 0.877 47 H 0.098 0.902 48 H 0.198 0.802 49 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 3.283 1.818 2.518 4.520 hybrid contribution -0.425 -0.006 -0.498 0.655 sum 2.858 1.812 2.020 3.941 Atomic orbital electron populations 1.86447 1.17469 1.82834 1.50961 1.24797 0.86021 1.12248 0.94848 0.93060 0.78483 0.73834 0.86627 1.21279 1.11007 0.96020 1.01175 1.24114 0.88256 0.98080 0.81229 1.83130 1.68633 1.21169 1.38060 1.18991 0.95663 0.80244 0.93758 1.18845 1.03799 0.94232 0.93124 1.21508 1.00025 0.90822 0.83317 1.86423 1.69741 1.42153 1.28197 1.24179 0.73388 0.87189 0.83220 1.90700 1.53971 1.17601 1.79774 1.22755 1.00933 1.00831 0.87739 0.82458 1.23052 1.01236 0.98657 0.92083 1.21533 0.97365 0.98712 0.90764 0.85503 1.19856 0.96811 0.96485 0.94832 1.21361 1.00377 1.00398 0.91979 1.21471 0.97243 0.96057 0.99970 1.21439 0.98116 0.98420 0.97481 1.21392 1.00481 1.00122 0.93127 1.21161 0.98000 0.96475 0.99081 1.23071 0.95590 1.04343 0.91962 1.21264 0.91899 0.90568 0.98557 1.21882 1.06837 0.93219 0.97940 1.96848 1.97451 1.02694 1.96208 1.21146 0.92870 0.92918 0.95539 1.20715 1.08244 0.95590 0.98439 1.18662 0.76563 0.88801 0.84819 1.90719 1.36599 1.67316 1.41922 0.74567 0.90650 1.18714 1.19061 0.76527 0.88602 0.88356 0.90405 0.88944 0.84173 0.84588 0.85002 0.85346 0.86192 0.87724 0.90159 0.80228 0.83166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -1.87 12.86 -148.98 -1.92 -3.79 16 2 C -0.07 -0.10 2.45 71.24 0.17 0.08 16 3 Si 0.78 -4.95 30.02 68.60 2.06 -2.89 16 4 C -0.29 -1.65 5.35 -19.78 -0.11 -1.76 16 5 C 0.15 0.12 9.99 66.97 0.67 0.79 16 6 O -0.21 -0.30 9.21 -2.79 -0.03 -0.32 16 7 C 0.16 0.53 6.74 22.98 0.15 0.69 16 8 C -0.10 -0.04 5.89 -19.78 -0.12 -0.16 16 9 C 0.12 -0.09 5.38 71.24 0.38 0.29 16 10 O -0.35 0.43 8.68 -51.38 -0.45 -0.01 16 11 C 0.48 0.21 7.48 71.24 0.53 0.74 16 12 O -0.53 -3.77 15.65 21.96 0.34 -3.43 16 13 C -0.10 0.56 4.26 -11.02 -0.05 0.51 16 14 H 0.16 -1.68 8.14 -2.39 -0.02 -1.70 16 15 C -0.11 0.37 6.87 31.12 0.21 0.58 16 16 C -0.07 0.32 3.98 -11.02 -0.04 0.28 16 17 H 0.13 -1.12 8.09 -2.39 -0.02 -1.14 16 18 C -0.08 0.00 5.29 -19.87 -0.11 -0.10 16 19 C -0.12 0.03 9.71 22.27 0.22 0.25 16 20 C -0.13 -0.09 10.05 22.27 0.22 0.14 16 21 C -0.14 -0.23 10.05 22.27 0.22 -0.01 16 22 C -0.13 -0.32 10.05 22.27 0.22 -0.10 16 23 C -0.13 -0.27 8.61 22.27 0.19 -0.08 16 24 C -0.11 0.64 7.00 31.12 0.22 0.86 16 25 C 0.00 0.00 9.10 22.31 0.20 0.20 16 26 C -0.12 -0.26 6.22 22.32 0.14 -0.12 16 27 Br -0.02 -0.02 33.69 -20.37 -0.69 -0.71 16 28 C 0.00 -0.03 9.40 22.45 0.21 0.18 16 29 C -0.23 -1.61 5.89 -20.01 -0.12 -1.72 16 30 C 0.43 4.67 6.98 25.67 0.18 4.85 16 31 O -0.48 -8.29 16.93 -5.03 -0.09 -8.37 16 32 H 0.40 -3.05 8.74 -74.06 -0.65 -3.69 16 33 H 0.08 0.11 7.96 -2.39 -0.02 0.09 16 34 H -0.26 0.86 6.91 99.48 0.69 1.55 16 35 H -0.27 0.82 7.11 99.48 0.71 1.53 16 36 H 0.22 -1.07 4.64 -2.91 -0.01 -1.08 16 37 H 0.10 -0.08 8.13 -2.39 -0.02 -0.10 16 38 H 0.10 -0.13 8.13 -2.39 -0.02 -0.15 16 39 H 0.08 0.14 7.02 -2.38 -0.02 0.13 16 40 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 41 H 0.14 -0.65 8.05 -2.91 -0.02 -0.67 16 42 H 0.14 -0.40 8.06 -2.91 -0.02 -0.42 16 43 H 0.13 -0.19 8.06 -2.91 -0.02 -0.22 16 44 H 0.13 -0.02 8.06 -2.91 -0.02 -0.05 16 45 H 0.12 0.14 6.66 -2.91 -0.02 0.12 16 46 H 0.10 -0.91 8.14 -2.38 -0.02 -0.93 16 47 H 0.08 -0.24 6.26 -2.39 -0.01 -0.26 16 48 H 0.18 -0.74 6.96 -2.91 -0.02 -0.76 16 49 H 0.15 0.93 7.81 -2.91 -0.02 0.91 16 Total: 0.00 -23.77 434.84 3.28 -20.50 By element: Atomic # 1 Polarization: -7.76 SS G_CDS: 0.41 Total: -7.35 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: 3.62 Total: 6.38 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -2.13 Total: -15.92 kcal Atomic # 14 Polarization: -4.95 SS G_CDS: 2.06 Total: -2.89 kcal Atomic # 35 Polarization: -0.02 SS G_CDS: -0.69 Total: -0.71 kcal Total: -23.77 3.28 -20.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_15070214_484008.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.757 kcal (2) G-P(sol) polarization free energy of solvation -23.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds