Wall clock time and date at job start Sat Mar 6 2021 05:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35909 * 117.00211 * 2 1 4 4 C 1.38817 * 119.98159 * 179.97438 * 3 2 1 5 5 C 1.50705 * 119.87534 * 359.97406 * 4 3 2 6 6 O 1.42906 * 109.46635 * 75.02309 * 5 4 3 7 7 Si 1.86291 * 109.46971 * 195.01948 * 5 4 3 8 8 C 1.38294 * 120.24679 * 179.97438 * 4 3 2 9 9 C 1.37947 * 120.21461 * 0.02562 * 8 4 3 10 10 C 1.39659 * 119.95831 * 359.97438 * 9 8 4 11 11 C 1.47742 * 120.11930 * 179.97438 * 10 9 8 12 12 O 1.21473 * 119.99910 * 180.02562 * 11 10 9 13 13 O 1.34710 * 119.99949 * 359.72023 * 11 10 9 14 14 C 1.45202 * 116.99623 * 180.27328 * 13 11 10 15 15 C 1.53001 * 109.47151 * 180.02562 * 14 13 11 16 16 H 1.08997 * 112.84914 * 45.33683 * 15 14 13 17 17 C 1.53777 * 113.61533 * 176.53189 * 15 14 13 18 18 C 1.53787 * 87.08074 * 139.98243 * 17 15 14 19 19 H 1.09006 * 113.61207 * 89.11356 * 18 17 15 20 20 O 1.42896 * 113.61403 * 219.93436 * 18 17 15 21 21 C 1.53779 * 113.61484 * 274.14411 * 15 14 13 22 22 C 1.38488 * 119.98111 * 0.24991 * 3 2 1 23 23 H 1.09007 * 109.46771 * 60.00522 * 1 2 3 24 24 H 1.08995 * 109.47352 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47210 * 300.00715 * 1 2 3 26 26 H 1.08994 * 109.46980 * 315.02652 * 5 4 3 27 27 H 0.96707 * 113.99522 * 179.97438 * 6 5 4 28 28 H 1.48503 * 109.99986 * 178.68268 * 7 5 4 29 29 H 1.48493 * 110.00427 * 300.00313 * 7 5 4 30 30 H 1.08003 * 119.89257 * 180.02562 * 8 4 3 31 31 H 1.08001 * 120.01809 * 180.02562 * 9 8 4 32 32 H 1.08998 * 109.47630 * 300.00514 * 14 13 11 33 33 H 1.09004 * 109.46770 * 60.00918 * 14 13 11 34 34 H 1.08996 * 113.61409 * 254.52685 * 17 15 14 35 35 H 1.08998 * 113.61794 * 25.35092 * 17 15 14 36 36 H 0.96707 * 114.00127 * 179.97438 * 20 18 17 37 37 H 1.09003 * 113.61699 * 334.56037 * 21 15 14 38 38 H 1.08996 * 113.61987 * 105.46703 * 21 15 14 39 39 H 1.08000 * 120.10628 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 3.4324 1.2831 0.0005 5 6 4.2500 0.0171 0.0017 6 8 4.2164 -0.5727 -1.2995 7 14 6.0117 0.4161 0.4574 8 6 4.0660 2.5124 0.0000 9 6 3.3244 3.6756 -0.0005 10 6 1.9292 3.6132 -0.0011 11 6 1.1315 4.8567 -0.0011 12 8 -0.0819 4.7999 -0.0011 13 8 1.7498 6.0536 0.0051 14 6 0.9028 7.2330 0.0109 15 6 1.7770 8.4886 0.0168 16 1 2.5982 8.4360 -0.6979 17 6 0.9747 9.7982 -0.0620 18 6 1.9685 10.3765 0.9593 19 1 2.8430 10.8405 0.5031 20 8 1.3548 11.2033 1.9501 21 6 2.2127 8.9292 1.4243 22 6 1.2915 2.3722 0.0052 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5140 0.8899 26 1 3.8361 -0.6820 0.7283 27 1 4.7232 -1.3931 -1.3726 28 1 6.8214 -0.8283 0.4931 29 1 6.5874 1.3685 -0.5257 30 1 5.1449 2.5618 0.0000 31 1 3.8225 4.6339 -0.0014 32 1 0.2737 7.2329 -0.8792 33 1 0.2734 7.2239 0.9008 34 1 1.0216 10.2808 -1.0382 35 1 -0.0429 9.7104 0.3184 36 1 1.9747 11.5697 2.5956 37 1 1.5346 8.6039 2.2132 38 1 3.2574 8.7114 1.6462 39 1 0.2129 2.3173 0.0097 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_15498042_11354868.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:37:26 Heat of formation + Delta-G solvation = -141.569910 kcal Electronic energy + Delta-G solvation = -23380.468937 eV Core-core repulsion = 19642.592148 eV Total energy + Delta-G solvation = -3737.876790 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 295.123 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.85098 -41.06496 -40.21934 -38.61504 -37.72912 -37.34581 -36.00112 -33.26463 -31.38859 -29.82063 -28.41569 -27.46657 -26.82826 -24.12393 -23.44801 -23.13672 -21.87310 -20.69607 -19.57634 -18.68714 -18.54842 -18.18865 -17.44776 -17.35677 -17.08179 -16.87189 -16.68225 -16.44173 -15.84464 -15.52509 -15.28682 -15.08679 -14.55917 -14.35067 -13.95411 -13.88602 -13.76802 -13.53676 -13.46787 -12.89749 -12.82713 -12.77849 -12.46046 -12.20771 -12.14371 -12.12612 -11.78540 -11.70169 -11.47806 -11.27043 -10.81197 -10.45730 -10.18323 -9.34325 -5.00591 -0.49941 0.26627 1.22565 1.44878 1.50760 1.54864 1.89513 2.21254 2.56687 3.10717 3.28320 3.35838 3.44834 3.52741 3.67076 3.76513 3.83291 3.84391 3.99738 4.02824 4.12313 4.17840 4.19635 4.21207 4.25067 4.39971 4.50885 4.54663 4.57233 4.68441 4.69106 4.69872 4.87473 4.97671 5.04523 5.13289 5.18731 5.26458 5.39673 5.48737 6.23352 6.46469 6.64742 6.71646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.303 6.303 3 C 0.144 3.856 4 C -0.070 4.070 5 C -0.071 4.071 6 O -0.530 6.530 7 Si 0.688 3.312 8 C -0.092 4.092 9 C -0.093 4.093 10 C -0.081 4.081 11 C 0.510 3.490 12 O -0.502 6.502 13 O -0.348 6.348 14 C 0.080 3.920 15 C -0.111 4.111 16 H 0.107 0.893 17 C -0.120 4.120 18 C 0.076 3.924 19 H 0.085 0.915 20 O -0.560 6.560 21 C -0.164 4.164 22 C -0.147 4.147 23 H 0.059 0.941 24 H 0.105 0.895 25 H 0.059 0.941 26 H 0.080 0.920 27 H 0.380 0.620 28 H -0.259 1.259 29 H -0.252 1.252 30 H 0.144 0.856 31 H 0.146 0.854 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.381 0.619 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.259 0.356 2.540 4.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.215 6.215 3 C 0.098 3.902 4 C -0.071 4.071 5 C -0.180 4.180 6 O -0.338 6.338 7 Si 0.588 3.412 8 C -0.110 4.110 9 C -0.111 4.111 10 C -0.083 4.083 11 C 0.355 3.645 12 O -0.391 6.391 13 O -0.264 6.264 14 C 0.006 3.994 15 C -0.129 4.129 16 H 0.125 0.875 17 C -0.158 4.158 18 C 0.017 3.983 19 H 0.103 0.897 20 O -0.365 6.365 21 C -0.202 4.202 22 C -0.166 4.166 23 H 0.077 0.923 24 H 0.123 0.877 25 H 0.078 0.922 26 H 0.098 0.902 27 H 0.227 0.773 28 H -0.184 1.184 29 H -0.177 1.177 30 H 0.161 0.839 31 H 0.164 0.836 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.113 0.887 36 H 0.228 0.772 37 H 0.110 0.890 38 H 0.094 0.906 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.883 0.525 1.835 3.458 hybrid contribution -0.120 -0.677 -0.548 0.880 sum 2.763 -0.152 1.287 3.052 Atomic orbital electron populations 1.23186 0.77785 1.04571 1.01778 1.86158 1.21677 1.25617 1.88074 1.18561 0.91352 0.84399 0.95932 1.18898 0.90531 0.94441 1.03258 1.24711 1.09896 0.94983 0.88419 1.86613 1.74527 1.43284 1.29329 0.95066 0.74095 0.82524 0.89469 1.20962 1.00542 0.90731 0.98756 1.21312 0.92053 0.99380 0.98349 1.18855 0.93391 0.89966 1.06060 1.21095 0.86434 0.84068 0.72911 1.90857 1.14916 1.87923 1.45412 1.86517 1.41438 1.14552 1.83939 1.23124 0.92258 0.80845 1.03132 1.22372 0.99504 0.91821 0.99236 0.87468 1.23065 0.99632 0.93745 0.99326 1.23319 0.95972 0.89046 0.89938 0.89704 1.86530 1.38755 1.67948 1.43309 1.23816 1.02713 0.96849 0.96777 1.21339 1.01214 0.90418 1.03630 0.92286 0.87691 0.92228 0.90232 0.77255 1.18414 1.17703 0.83884 0.83639 0.90620 0.90597 0.90023 0.88700 0.77177 0.89031 0.90593 0.83568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 9.81 101.05 0.99 0.98 16 2 O -0.30 -0.70 9.81 -19.46 -0.19 -0.89 16 3 C 0.14 0.36 6.65 -39.28 -0.26 0.10 16 4 C -0.07 -0.12 5.31 -104.38 -0.55 -0.67 16 5 C -0.07 -0.03 2.36 36.01 0.08 0.05 16 6 O -0.53 -0.97 12.86 -35.23 -0.45 -1.42 16 7 Si 0.69 -0.90 30.19 -169.99 -5.13 -6.03 16 8 C -0.09 -0.03 8.64 -39.67 -0.34 -0.37 16 9 C -0.09 -0.04 9.61 -39.16 -0.38 -0.42 16 10 C -0.08 -0.18 5.87 -105.00 -0.62 -0.80 16 11 C 0.51 1.69 7.90 34.62 0.27 1.96 16 12 O -0.50 -2.88 16.13 -19.25 -0.31 -3.19 16 13 O -0.35 -0.62 9.47 -40.52 -0.38 -1.01 16 14 C 0.08 0.05 5.30 37.16 0.20 0.24 16 15 C -0.11 0.13 4.01 -89.81 -0.36 -0.24 16 16 H 0.11 -0.19 8.14 -51.93 -0.42 -0.62 16 17 C -0.12 0.11 7.48 -25.92 -0.19 -0.09 16 18 C 0.08 -0.08 5.21 -25.82 -0.13 -0.21 16 19 H 0.09 -0.21 8.14 -51.93 -0.42 -0.63 16 20 O -0.56 -0.24 13.68 -35.23 -0.48 -0.72 16 21 C -0.16 0.20 7.48 -25.83 -0.19 0.00 16 22 C -0.15 -0.34 8.58 -39.01 -0.33 -0.68 16 23 H 0.06 -0.05 7.67 -51.93 -0.40 -0.45 16 24 H 0.10 -0.25 8.14 -51.93 -0.42 -0.67 16 25 H 0.06 -0.09 7.65 -51.93 -0.40 -0.49 16 26 H 0.08 -0.03 7.82 -51.93 -0.41 -0.44 16 27 H 0.38 -0.85 8.74 45.56 0.40 -0.45 16 28 H -0.26 -0.20 7.11 56.52 0.40 0.21 16 29 H -0.25 -0.26 6.74 56.52 0.38 0.12 16 30 H 0.14 -0.22 4.87 -52.48 -0.26 -0.48 16 31 H 0.15 -0.20 7.61 -52.49 -0.40 -0.60 16 32 H 0.08 0.05 8.14 -51.93 -0.42 -0.38 16 33 H 0.08 0.07 7.87 -51.93 -0.41 -0.34 16 34 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 35 H 0.09 -0.01 8.10 -51.93 -0.42 -0.43 16 36 H 0.38 -1.38 9.12 45.56 0.42 -0.96 16 37 H 0.09 -0.03 7.92 -51.93 -0.41 -0.44 16 38 H 0.08 -0.14 8.14 -51.93 -0.42 -0.57 16 39 H 0.15 0.26 5.88 -52.49 -0.31 -0.05 16 LS Contribution 332.29 15.07 5.01 5.01 Total: 0.00 -8.50 332.29 -8.11 -16.61 By element: Atomic # 1 Polarization: -3.87 SS G_CDS: -4.35 Total: -8.22 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -1.82 Total: -0.14 kcal Atomic # 8 Polarization: -5.41 SS G_CDS: -1.82 Total: -7.23 kcal Atomic # 14 Polarization: -0.90 SS G_CDS: -5.13 Total: -6.03 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -8.50 -8.11 -16.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_15498042_11354868.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.957 kcal (2) G-P(sol) polarization free energy of solvation -8.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds