Wall clock time and date at job start Sat Mar 6 2021 05:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35909 * 117.00211 * 2 1 4 4 C 1.38817 * 119.98159 * 179.97438 * 3 2 1 5 5 C 1.50705 * 119.87534 * 359.97406 * 4 3 2 6 6 O 1.42906 * 109.46635 * 75.02309 * 5 4 3 7 7 Si 1.86291 * 109.46971 * 195.01948 * 5 4 3 8 8 C 1.38294 * 120.24679 * 179.97438 * 4 3 2 9 9 C 1.37947 * 120.21461 * 0.02562 * 8 4 3 10 10 C 1.39659 * 119.95831 * 359.97438 * 9 8 4 11 11 C 1.47742 * 120.11930 * 179.97438 * 10 9 8 12 12 O 1.21473 * 119.99910 * 180.02562 * 11 10 9 13 13 O 1.34710 * 119.99949 * 359.72023 * 11 10 9 14 14 C 1.45202 * 116.99623 * 180.27328 * 13 11 10 15 15 C 1.53001 * 109.47151 * 180.02562 * 14 13 11 16 16 H 1.08997 * 112.84914 * 45.33683 * 15 14 13 17 17 C 1.53777 * 113.61533 * 176.53189 * 15 14 13 18 18 C 1.53787 * 87.08074 * 139.98243 * 17 15 14 19 19 H 1.09006 * 113.61207 * 89.11356 * 18 17 15 20 20 O 1.42896 * 113.61403 * 219.93436 * 18 17 15 21 21 C 1.53779 * 113.61484 * 274.14411 * 15 14 13 22 22 C 1.38488 * 119.98111 * 0.24991 * 3 2 1 23 23 H 1.09007 * 109.46771 * 60.00522 * 1 2 3 24 24 H 1.08995 * 109.47352 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47210 * 300.00715 * 1 2 3 26 26 H 1.08994 * 109.46980 * 315.02652 * 5 4 3 27 27 H 0.96707 * 113.99522 * 179.97438 * 6 5 4 28 28 H 1.48503 * 109.99986 * 178.68268 * 7 5 4 29 29 H 1.48493 * 110.00427 * 300.00313 * 7 5 4 30 30 H 1.08003 * 119.89257 * 180.02562 * 8 4 3 31 31 H 1.08001 * 120.01809 * 180.02562 * 9 8 4 32 32 H 1.08998 * 109.47630 * 300.00514 * 14 13 11 33 33 H 1.09004 * 109.46770 * 60.00918 * 14 13 11 34 34 H 1.08996 * 113.61409 * 254.52685 * 17 15 14 35 35 H 1.08998 * 113.61794 * 25.35092 * 17 15 14 36 36 H 0.96707 * 114.00127 * 179.97438 * 20 18 17 37 37 H 1.09003 * 113.61699 * 334.56037 * 21 15 14 38 38 H 1.08996 * 113.61987 * 105.46703 * 21 15 14 39 39 H 1.08000 * 120.10628 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 3.4324 1.2831 0.0005 5 6 4.2500 0.0171 0.0017 6 8 4.2164 -0.5727 -1.2995 7 14 6.0117 0.4161 0.4574 8 6 4.0660 2.5124 0.0000 9 6 3.3244 3.6756 -0.0005 10 6 1.9292 3.6132 -0.0011 11 6 1.1315 4.8567 -0.0011 12 8 -0.0819 4.7999 -0.0011 13 8 1.7498 6.0536 0.0051 14 6 0.9028 7.2330 0.0109 15 6 1.7770 8.4886 0.0168 16 1 2.5982 8.4360 -0.6979 17 6 0.9747 9.7982 -0.0620 18 6 1.9685 10.3765 0.9593 19 1 2.8430 10.8405 0.5031 20 8 1.3548 11.2033 1.9501 21 6 2.2127 8.9292 1.4243 22 6 1.2915 2.3722 0.0052 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5140 0.8899 26 1 3.8361 -0.6820 0.7283 27 1 4.7232 -1.3931 -1.3726 28 1 6.8214 -0.8283 0.4931 29 1 6.5874 1.3685 -0.5257 30 1 5.1449 2.5618 0.0000 31 1 3.8225 4.6339 -0.0014 32 1 0.2737 7.2329 -0.8792 33 1 0.2734 7.2239 0.9008 34 1 1.0216 10.2808 -1.0382 35 1 -0.0429 9.7104 0.3184 36 1 1.9747 11.5697 2.5956 37 1 1.5346 8.6039 2.2132 38 1 3.2574 8.7114 1.6462 39 1 0.2129 2.3173 0.0097 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_15498042_11354868.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:37:25 Heat of formation + Delta-G solvation = -142.228803 kcal Electronic energy + Delta-G solvation = -23380.497509 eV Core-core repulsion = 19642.592148 eV Total energy + Delta-G solvation = -3737.905362 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 295.123 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.99774 -41.15696 -40.19835 -38.67590 -37.82614 -37.51002 -35.98152 -33.36080 -31.45832 -29.86286 -28.40634 -27.53435 -26.73593 -24.17349 -23.50530 -23.15809 -21.99635 -20.63148 -19.68054 -18.71948 -18.59234 -18.28409 -17.61261 -17.44403 -17.15346 -16.93708 -16.73024 -16.36291 -15.84577 -15.54529 -15.32095 -15.14497 -14.59864 -14.41127 -14.00580 -13.92603 -13.82559 -13.55002 -13.46800 -12.91804 -12.83202 -12.76799 -12.41529 -12.25072 -12.20439 -12.18215 -11.82046 -11.74315 -11.62972 -11.21548 -10.72729 -10.45938 -10.28039 -9.43218 -4.89379 -0.63532 0.19319 1.25571 1.29557 1.36785 1.63057 1.95036 2.19424 2.46941 3.15795 3.32099 3.40600 3.48921 3.56139 3.64744 3.74767 3.83674 3.95050 3.97221 4.01937 4.16077 4.19818 4.20070 4.24974 4.27018 4.36326 4.47312 4.59582 4.65418 4.69314 4.75995 4.80231 4.90905 4.99986 5.05128 5.11824 5.13836 5.19737 5.39732 5.45287 6.17339 6.50111 6.59669 6.89778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.318 6.318 3 C 0.128 3.872 4 C -0.081 4.081 5 C -0.089 4.089 6 O -0.555 6.555 7 Si 0.778 3.222 8 C -0.091 4.091 9 C -0.083 4.083 10 C -0.097 4.097 11 C 0.512 3.488 12 O -0.535 6.535 13 O -0.342 6.342 14 C 0.076 3.924 15 C -0.102 4.102 16 H 0.121 0.879 17 C -0.126 4.126 18 C 0.075 3.925 19 H 0.104 0.896 20 O -0.583 6.583 21 C -0.161 4.161 22 C -0.155 4.155 23 H 0.057 0.943 24 H 0.122 0.878 25 H 0.065 0.935 26 H 0.084 0.916 27 H 0.394 0.606 28 H -0.286 1.286 29 H -0.279 1.279 30 H 0.165 0.835 31 H 0.168 0.832 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.396 0.604 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.801 0.755 2.698 5.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.231 6.231 3 C 0.082 3.918 4 C -0.082 4.082 5 C -0.196 4.196 6 O -0.365 6.365 7 Si 0.681 3.319 8 C -0.108 4.108 9 C -0.101 4.101 10 C -0.098 4.098 11 C 0.358 3.642 12 O -0.426 6.426 13 O -0.258 6.258 14 C 0.003 3.997 15 C -0.120 4.120 16 H 0.139 0.861 17 C -0.163 4.163 18 C 0.017 3.983 19 H 0.122 0.878 20 O -0.392 6.392 21 C -0.199 4.199 22 C -0.174 4.174 23 H 0.076 0.924 24 H 0.140 0.860 25 H 0.084 0.916 26 H 0.102 0.898 27 H 0.244 0.756 28 H -0.213 1.213 29 H -0.206 1.206 30 H 0.182 0.818 31 H 0.185 0.815 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.246 0.754 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.419 0.924 2.007 4.941 hybrid contribution -0.617 -0.827 -0.609 1.198 sum 3.802 0.097 1.399 4.053 Atomic orbital electron populations 1.23363 0.76644 1.05772 1.02035 1.86127 1.22982 1.25780 1.88220 1.18754 0.91949 0.84422 0.96638 1.19253 0.90530 0.95585 1.02833 1.25090 1.11701 0.94712 0.88075 1.86561 1.75407 1.44403 1.30129 0.94005 0.70588 0.79756 0.87521 1.21208 1.01531 0.90104 0.97949 1.21557 0.91241 1.00475 0.96832 1.18923 0.94203 0.89359 1.07338 1.21333 0.86126 0.84704 0.71989 1.90836 1.16268 1.88340 1.47182 1.86514 1.41348 1.14411 1.83486 1.23254 0.92668 0.81134 1.02672 1.22357 0.99416 0.90557 0.99717 0.86121 1.23102 0.99125 0.94097 0.99992 1.23438 0.96262 0.89003 0.89622 0.87822 1.86486 1.40273 1.68293 1.44144 1.23775 1.03041 0.96846 0.96255 1.21373 1.01241 0.90730 1.04052 0.92433 0.86011 0.91612 0.89761 0.75571 1.21332 1.20575 0.81799 0.81482 0.90905 0.91384 0.89085 0.90048 0.75395 0.90317 0.89433 0.83900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.00 9.81 113.37 1.11 1.11 16 2 O -0.32 -1.82 9.81 -92.53 -0.91 -2.73 16 3 C 0.13 0.76 6.65 22.47 0.15 0.91 16 4 C -0.08 -0.28 5.31 -19.71 -0.10 -0.38 16 5 C -0.09 -0.07 2.36 71.24 0.17 0.10 16 6 O -0.56 -2.14 12.86 -148.98 -1.92 -4.05 16 7 Si 0.78 -2.81 30.19 68.60 2.07 -0.74 16 8 C -0.09 0.01 8.64 22.21 0.19 0.21 16 9 C -0.08 -0.03 9.61 22.54 0.22 0.19 16 10 C -0.10 -0.50 5.87 -20.11 -0.12 -0.62 16 11 C 0.51 3.92 7.90 70.34 0.56 4.48 16 12 O -0.53 -7.12 16.13 19.92 0.32 -6.80 16 13 O -0.34 -1.30 9.47 -56.19 -0.53 -1.83 16 14 C 0.08 0.14 5.30 71.98 0.38 0.52 16 15 C -0.10 0.27 4.01 -10.27 -0.04 0.23 16 16 H 0.12 -0.61 8.14 -2.39 -0.02 -0.63 16 17 C -0.13 0.22 7.48 31.12 0.23 0.45 16 18 C 0.08 -0.20 5.21 31.18 0.16 -0.04 16 19 H 0.10 -0.67 8.14 -2.38 -0.02 -0.69 16 20 O -0.58 -0.43 13.68 -148.98 -2.04 -2.47 16 21 C -0.16 0.45 7.48 31.18 0.23 0.69 16 22 C -0.16 -0.93 8.58 22.64 0.19 -0.74 16 23 H 0.06 -0.01 7.67 -2.38 -0.02 -0.03 16 24 H 0.12 -0.52 8.14 -2.39 -0.02 -0.54 16 25 H 0.07 -0.12 7.65 -2.39 -0.02 -0.14 16 26 H 0.08 -0.06 7.82 -2.39 -0.02 -0.08 16 27 H 0.39 -1.70 8.74 -74.05 -0.65 -2.35 16 28 H -0.29 -0.25 7.11 99.48 0.71 0.46 16 29 H -0.28 -0.24 6.74 99.48 0.67 0.43 16 30 H 0.16 -0.79 4.87 -2.91 -0.01 -0.80 16 31 H 0.17 -0.75 7.61 -2.91 -0.02 -0.77 16 32 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 33 H 0.07 0.23 7.87 -2.38 -0.02 0.21 16 34 H 0.09 -0.35 8.14 -2.39 -0.02 -0.36 16 35 H 0.08 0.08 8.10 -2.39 -0.02 0.06 16 36 H 0.40 -2.99 9.12 -74.05 -0.68 -3.66 16 37 H 0.08 0.00 7.92 -2.39 -0.02 -0.02 16 38 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 39 H 0.14 0.81 5.88 -2.91 -0.02 0.79 16 Total: 0.00 -20.04 332.29 0.11 -19.94 By element: Atomic # 1 Polarization: -8.20 SS G_CDS: -0.23 Total: -8.43 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 3.33 Total: 7.11 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: -5.07 Total: -17.88 kcal Atomic # 14 Polarization: -2.81 SS G_CDS: 2.07 Total: -0.74 kcal Total: -20.04 0.11 -19.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_15498042_11354868.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.292 kcal (2) G-P(sol) polarization free energy of solvation -20.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds