Wall clock time and date at job start Sat Mar 6 2021 04:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35921 * 116.99892 * 2 1 4 4 C 1.38817 * 119.98159 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.87649 * 0.02562 * 4 3 2 6 6 O 1.42907 * 109.46818 * 75.00122 * 5 4 3 7 7 Si 1.86303 * 109.46867 * 194.99824 * 5 4 3 8 8 C 1.38299 * 120.24375 * 179.97438 * 4 3 2 9 9 C 1.37946 * 120.21764 * 359.78473 * 8 4 3 10 10 C 1.39665 * 119.95526 * 0.49319 * 9 8 4 11 11 C 1.47738 * 120.12072 * 179.76590 * 10 9 8 12 12 O 1.21463 * 120.00177 * 179.72104 * 11 10 9 13 13 O 1.34719 * 120.00145 * 359.72351 * 11 10 9 14 14 C 1.45198 * 117.00054 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.46884 * 179.97438 * 14 13 11 16 16 H 1.09004 * 109.46724 * 180.02562 * 15 14 13 17 17 O 1.42972 * 109.47170 * 299.99441 * 15 14 13 18 18 C 1.43083 * 113.76926 * 178.79760 * 17 15 14 19 19 C 1.53261 * 108.94491 * 302.03169 * 18 17 15 20 20 H 1.09004 * 109.67783 * 294.65429 * 19 18 17 21 21 N 1.46500 * 109.57827 * 174.33761 * 19 18 17 22 22 C 1.34528 * 124.45626 * 300.33746 * 21 19 18 23 23 O 1.21449 * 125.70909 * 0.03185 * 22 21 19 24 24 C 1.47813 * 108.57860 * 179.90763 * 22 21 19 25 25 C 1.40945 * 105.88144 * 0.34325 * 24 22 21 26 26 C 1.38568 * 119.82297 * 179.79449 * 25 24 22 27 27 C 1.38610 * 119.71524 * 0.02562 * 26 25 24 28 28 C 1.38230 * 120.46343 * 359.97438 * 27 26 25 29 29 C 1.38571 * 134.29836 * 180.10270 * 24 22 21 30 30 C 1.34525 * 124.46377 * 120.64039 * 21 19 18 31 31 O 1.21445 * 125.70734 * 359.96354 * 30 21 19 32 32 C 1.53257 * 108.84382 * 54.52179 * 19 18 17 33 33 O 1.42965 * 109.47614 * 59.99854 * 15 14 13 34 34 C 1.38481 * 119.97945 * 0.02562 * 3 2 1 35 35 H 1.09000 * 109.46500 * 179.97438 * 1 2 3 36 36 H 1.09000 * 109.47043 * 299.99492 * 1 2 3 37 37 H 1.08999 * 109.46748 * 59.99942 * 1 2 3 38 38 H 1.08991 * 109.47332 * 315.00362 * 5 4 3 39 39 H 0.96700 * 113.99877 * 179.97438 * 6 5 4 40 40 H 1.48502 * 109.99936 * 299.99933 * 7 5 4 41 41 H 1.48494 * 109.99950 * 61.32191 * 7 5 4 42 42 H 1.08005 * 119.88868 * 180.02562 * 8 4 3 43 43 H 1.07996 * 120.02776 * 180.25635 * 9 8 4 44 44 H 1.09002 * 109.47379 * 59.99614 * 14 13 11 45 45 H 1.09001 * 109.46782 * 299.99697 * 14 13 11 46 46 H 1.09001 * 109.55815 * 182.19631 * 18 17 15 47 47 H 1.08995 * 109.65153 * 61.92628 * 18 17 15 48 48 H 1.07997 * 120.13887 * 180.02562 * 26 25 24 49 49 H 1.08001 * 119.76559 * 180.02562 * 27 26 25 50 50 H 1.08001 * 119.77266 * 179.97438 * 28 27 26 51 51 H 1.08003 * 120.13353 * 0.24529 * 29 24 22 52 52 H 1.09001 * 109.55744 * 185.63676 * 32 19 18 53 53 H 1.09000 * 109.55640 * 65.31910 * 32 19 18 54 54 H 1.08002 * 120.10741 * 0.02562 * 34 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 3.4324 1.2833 0.0005 5 6 4.2500 0.0174 0.0005 6 8 4.2160 -0.5715 -1.3011 7 14 6.0120 0.4163 0.4559 8 6 4.0658 2.5127 0.0000 9 6 3.3242 3.6758 -0.0055 10 6 1.9290 3.6133 -0.0002 11 6 1.1312 4.8568 -0.0009 12 8 -0.0821 4.7999 -0.0014 13 8 1.7493 6.0538 -0.0011 14 6 0.9023 7.2331 -0.0012 15 6 1.7765 8.4888 -0.0007 16 1 1.1406 9.3741 -0.0003 17 8 2.6014 8.4947 1.1671 18 6 3.4800 9.6212 1.2467 19 6 4.3719 9.6458 0.0006 20 1 5.0253 8.7733 -0.0004 21 7 5.1826 10.8660 0.0011 22 6 4.6799 12.1138 0.0015 23 8 3.5003 12.4028 0.0020 24 6 5.8035 13.0742 0.0042 25 6 6.9775 12.2943 -0.0027 26 6 8.2167 12.9143 -0.0064 27 6 8.2925 14.2983 -0.0027 28 6 7.1412 15.0633 0.0041 29 6 5.8948 14.4569 0.0075 30 6 6.5277 10.8862 -0.0045 31 8 7.2513 9.9109 -0.0102 32 6 3.4810 9.6216 -1.2462 33 8 2.6024 8.4951 -1.1676 34 6 1.2914 2.3722 0.0005 35 1 -0.3632 -1.0277 -0.0005 36 1 -0.3633 0.5138 0.8900 37 1 -0.3633 0.5138 -0.8900 38 1 3.8365 -0.6822 0.7268 39 1 4.7228 -1.3918 -1.3750 40 1 6.5872 1.3695 -0.5269 41 1 6.0642 1.0001 1.8202 42 1 5.1447 2.5622 0.0000 43 1 3.8221 4.6342 -0.0101 44 1 0.2729 7.2286 0.8888 45 1 0.2731 7.2283 -0.8912 46 1 4.1013 9.5371 2.1384 47 1 2.8950 10.5396 1.2949 48 1 9.1196 12.3217 -0.0122 49 1 9.2580 14.7825 -0.0060 50 1 7.2132 16.1409 0.0073 51 1 4.9985 15.0594 0.0124 52 1 4.1030 9.5378 -2.1375 53 1 2.8946 10.5392 -1.2936 54 1 0.2128 2.3173 0.0014 There are 83 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 83 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_15498042_13594054.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 04:19:25 Heat of formation + Delta-G solvation = -194.209404 kcal Electronic energy + Delta-G solvation = -45460.164604 eV Core-core repulsion = 39489.874487 eV Total energy + Delta-G solvation = -5970.290118 eV No. of doubly occupied orbitals = 83 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 456.148 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -43.74573 -42.13148 -41.44543 -40.98130 -39.98760 -39.51013 -38.76120 -37.90060 -37.47247 -37.22331 -37.16209 -34.60857 -33.46801 -32.18899 -31.88567 -31.51309 -30.02837 -28.47313 -27.74633 -27.55508 -26.38458 -25.47215 -24.47107 -23.68029 -23.53869 -23.48692 -22.45768 -22.05102 -21.03882 -19.93521 -19.22851 -19.04633 -18.97686 -18.52924 -18.43633 -17.86324 -17.77373 -17.65964 -17.42004 -17.38657 -17.08359 -16.97601 -16.76238 -16.64246 -16.41753 -16.22533 -16.02192 -15.92150 -15.51587 -15.36726 -15.27737 -15.09330 -14.86120 -14.84510 -14.67617 -14.64756 -14.56598 -14.17548 -13.96651 -13.83209 -13.71041 -13.56523 -13.30901 -13.00586 -12.88986 -12.75027 -12.72352 -12.53708 -12.30417 -12.29905 -12.26461 -11.99030 -11.98404 -11.82996 -11.73475 -11.65518 -11.02706 -10.90932 -10.45555 -10.28449 -10.27790 -10.27283 -9.55531 -4.95400 -1.14408 -0.77304 -0.08676 0.01879 0.83204 0.85753 1.14138 1.22224 1.27040 1.58012 1.65962 1.94375 2.10090 2.11745 2.17609 2.33431 2.41199 2.54682 3.03137 3.08937 3.15215 3.17302 3.32903 3.38968 3.47083 3.50855 3.63124 3.69470 3.76187 3.82556 3.88275 3.99000 3.99583 4.00896 4.01661 4.06975 4.08830 4.12332 4.16361 4.20042 4.24097 4.26212 4.27930 4.37256 4.42505 4.48188 4.55000 4.65730 4.75696 4.78034 4.85035 4.88250 4.96859 5.00769 5.15916 5.22615 5.26454 5.30253 5.36607 5.62950 5.65127 5.88649 6.09179 6.30848 6.37945 6.90520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.312 6.312 3 C 0.136 3.864 4 C -0.088 4.088 5 C -0.079 4.079 6 O -0.560 6.560 7 Si 0.781 3.219 8 C -0.107 4.107 9 C -0.088 4.088 10 C -0.095 4.095 11 C 0.516 3.484 12 O -0.524 6.524 13 O -0.337 6.337 14 C 0.080 3.920 15 C 0.241 3.759 16 H 0.112 0.888 17 O -0.384 6.384 18 C 0.051 3.949 19 C 0.076 3.924 20 H 0.118 0.882 21 N -0.569 5.569 22 C 0.576 3.424 23 O -0.480 6.480 24 C -0.159 4.159 25 C -0.159 4.159 26 C -0.045 4.045 27 C -0.084 4.084 28 C -0.084 4.084 29 C -0.042 4.042 30 C 0.576 3.424 31 O -0.489 6.489 32 C 0.051 3.949 33 O -0.384 6.384 34 C -0.148 4.148 35 H 0.127 0.873 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.087 0.913 39 H 0.403 0.597 40 H -0.283 1.283 41 H -0.285 1.285 42 H 0.144 0.856 43 H 0.153 0.847 44 H 0.110 0.890 45 H 0.109 0.891 46 H 0.115 0.885 47 H 0.077 0.923 48 H 0.153 0.847 49 H 0.176 0.824 50 H 0.177 0.823 51 H 0.156 0.844 52 H 0.114 0.886 53 H 0.077 0.923 54 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.564 4.809 1.113 7.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.225 6.225 3 C 0.089 3.911 4 C -0.089 4.089 5 C -0.187 4.187 6 O -0.370 6.370 7 Si 0.685 3.315 8 C -0.124 4.124 9 C -0.107 4.107 10 C -0.096 4.096 11 C 0.362 3.638 12 O -0.415 6.415 13 O -0.252 6.252 14 C 0.006 3.994 15 C 0.147 3.853 16 H 0.129 0.871 17 O -0.304 6.304 18 C -0.026 4.026 19 C -0.026 4.026 20 H 0.136 0.864 21 N -0.314 5.314 22 C 0.368 3.632 23 O -0.353 6.353 24 C -0.163 4.163 25 C -0.163 4.163 26 C -0.063 4.063 27 C -0.101 4.101 28 C -0.101 4.101 29 C -0.061 4.061 30 C 0.367 3.633 31 O -0.361 6.361 32 C -0.026 4.026 33 O -0.304 6.304 34 C -0.167 4.167 35 H 0.145 0.855 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.254 0.746 40 H -0.210 1.210 41 H -0.212 1.212 42 H 0.161 0.839 43 H 0.171 0.829 44 H 0.128 0.872 45 H 0.127 0.873 46 H 0.133 0.867 47 H 0.095 0.905 48 H 0.171 0.829 49 H 0.194 0.806 50 H 0.194 0.806 51 H 0.174 0.826 52 H 0.132 0.868 53 H 0.095 0.905 54 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 5.103 4.982 1.214 7.234 hybrid contribution -1.244 0.468 -0.031 1.330 sum 3.859 5.450 1.184 6.782 Atomic orbital electron populations 1.23434 0.76302 1.06158 1.02154 1.86144 1.23253 1.25086 1.87981 1.18653 0.91553 0.84765 0.96099 1.19422 0.91249 0.95618 1.02583 1.24845 1.10363 0.93989 0.89535 1.86457 1.77128 1.45026 1.28400 0.94163 0.75580 0.85530 0.76226 1.21009 1.00367 0.91226 0.99810 1.21431 0.92040 0.99795 0.97395 1.18902 0.93603 0.89999 1.07115 1.21177 0.86146 0.84382 0.72143 1.90826 1.15505 1.88190 1.47008 1.86635 1.40837 1.14280 1.83477 1.23386 0.91397 0.78874 1.05720 1.23869 0.88039 0.97580 0.75847 0.87114 1.88230 1.53696 1.46130 1.42299 1.23025 0.92161 0.89953 0.97432 1.22579 0.94434 0.86824 0.98812 0.86365 1.46464 1.08586 1.08079 1.68248 1.18734 0.88506 0.82414 0.73575 1.90794 1.17754 1.81836 1.44915 1.20448 0.92144 0.95621 1.08067 1.20428 0.96267 0.91469 1.08140 1.21163 0.95608 0.95782 0.93769 1.21960 1.01332 0.92034 0.94795 1.21971 0.90544 1.02860 0.94763 1.21169 1.00572 0.90729 0.93612 1.18792 0.81053 0.89955 0.73490 1.90826 1.58719 1.41505 1.45093 1.23036 0.92183 0.89937 0.97455 1.88231 1.53647 1.46154 1.42359 1.21454 1.01618 0.90306 1.03306 0.85502 0.91658 0.92112 0.89508 0.74604 1.20993 1.21202 0.83858 0.82885 0.87242 0.87309 0.86727 0.90495 0.82918 0.80645 0.80578 0.82609 0.86769 0.90506 0.82850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.00 9.81 113.37 1.11 1.11 16 2 O -0.31 -2.15 9.81 -92.66 -0.91 -3.06 16 3 C 0.14 1.20 6.65 22.47 0.15 1.35 16 4 C -0.09 -0.72 5.31 -19.71 -0.10 -0.83 16 5 C -0.08 -0.22 2.36 71.24 0.17 -0.05 16 6 O -0.56 -1.70 12.86 -148.98 -1.92 -3.62 16 7 Si 0.78 -0.71 30.19 68.60 2.07 1.36 16 8 C -0.11 -0.82 8.64 22.21 0.19 -0.63 16 9 C -0.09 -0.71 9.61 22.55 0.22 -0.50 16 10 C -0.09 -0.94 5.87 -20.11 -0.12 -1.05 16 11 C 0.52 5.71 7.90 70.33 0.56 6.26 16 12 O -0.52 -7.41 16.13 19.96 0.32 -7.09 16 13 O -0.34 -3.15 9.27 -49.99 -0.46 -3.61 16 14 C 0.08 0.36 5.56 71.98 0.40 0.76 16 15 C 0.24 0.94 3.59 71.98 0.26 1.20 16 16 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 17 O -0.38 -2.38 10.44 -122.14 -1.27 -3.65 16 18 C 0.05 0.18 6.32 72.07 0.46 0.63 16 19 C 0.08 0.31 3.08 45.16 0.14 0.45 16 20 H 0.12 0.74 7.59 -2.39 -0.02 0.72 16 21 N -0.57 -2.19 2.53 -739.55 -1.87 -4.06 16 22 C 0.58 2.00 7.35 86.82 0.64 2.63 16 23 O -0.48 -3.17 15.16 -3.55 -0.05 -3.23 16 24 C -0.16 0.04 6.40 -20.00 -0.13 -0.09 16 25 C -0.16 -0.07 6.40 -20.00 -0.13 -0.20 16 26 C -0.04 0.22 10.09 22.44 0.23 0.45 16 27 C -0.08 0.85 10.03 22.36 0.22 1.07 16 28 C -0.08 0.87 10.04 22.36 0.22 1.10 16 29 C -0.04 0.24 10.09 22.44 0.23 0.47 16 30 C 0.58 3.07 8.02 86.82 0.70 3.76 16 31 O -0.49 -5.35 17.44 -3.54 -0.06 -5.41 16 32 C 0.05 0.18 6.32 72.07 0.46 0.64 16 33 O -0.38 -2.45 10.44 -122.14 -1.27 -3.72 16 34 C -0.15 -1.30 8.58 22.64 0.19 -1.11 16 35 H 0.13 -0.56 8.14 -2.39 -0.02 -0.58 16 36 H 0.06 -0.08 7.66 -2.39 -0.02 -0.10 16 37 H 0.06 -0.01 7.66 -2.39 -0.02 -0.03 16 38 H 0.09 0.05 7.82 -2.39 -0.02 0.03 16 39 H 0.40 -3.18 8.74 -74.06 -0.65 -3.82 16 40 H -0.28 -1.35 6.74 99.48 0.67 -0.68 16 41 H -0.29 -1.27 7.11 99.48 0.71 -0.56 16 42 H 0.14 0.78 4.87 -2.91 -0.01 0.76 16 43 H 0.15 0.91 7.61 -2.91 -0.02 0.89 16 44 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 45 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 46 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 47 H 0.08 0.24 6.67 -2.39 -0.02 0.22 16 48 H 0.15 -1.08 8.06 -2.91 -0.02 -1.11 16 49 H 0.18 -2.83 8.06 -2.91 -0.02 -2.86 16 50 H 0.18 -2.91 8.06 -2.91 -0.02 -2.94 16 51 H 0.16 -1.33 8.06 -2.91 -0.02 -1.36 16 52 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 53 H 0.08 0.25 6.67 -2.39 -0.02 0.23 16 54 H 0.15 1.04 5.88 -2.91 -0.02 1.03 16 Total: 0.00 -28.99 458.41 0.98 -28.00 By element: Atomic # 1 Polarization: -9.72 SS G_CDS: 0.36 Total: -9.36 kcal Atomic # 6 Polarization: 11.38 SS G_CDS: 6.05 Total: 17.44 kcal Atomic # 7 Polarization: -2.19 SS G_CDS: -1.87 Total: -4.06 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -5.63 Total: -33.38 kcal Atomic # 14 Polarization: -0.71 SS G_CDS: 2.07 Total: 1.36 kcal Total: -28.99 0.98 -28.00 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_15498042_13594054.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.205 kcal (2) G-P(sol) polarization free energy of solvation -28.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds