Wall clock time and date at job start Sat Mar 6 2021 05:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35909 * 117.00211 * 2 1 4 4 C 1.38817 * 119.98159 * 179.97438 * 3 2 1 5 5 C 1.50705 * 119.87534 * 359.97406 * 4 3 2 6 6 O 1.42906 * 109.46635 * 75.02309 * 5 4 3 7 7 Si 1.86291 * 109.46971 * 195.01948 * 5 4 3 8 8 C 1.38294 * 120.24679 * 179.97438 * 4 3 2 9 9 C 1.37947 * 120.21461 * 0.02562 * 8 4 3 10 10 C 1.39659 * 119.95831 * 359.97438 * 9 8 4 11 11 C 1.47742 * 120.11930 * 179.97438 * 10 9 8 12 12 O 1.21473 * 119.99910 * 180.02562 * 11 10 9 13 13 O 1.34710 * 119.99949 * 359.72023 * 11 10 9 14 14 C 1.45202 * 116.99623 * 180.27328 * 13 11 10 15 15 C 1.53001 * 109.47151 * 180.02562 * 14 13 11 16 16 H 1.09005 * 112.84725 * 314.67073 * 15 14 13 17 17 C 1.53778 * 113.61474 * 85.86567 * 15 14 13 18 18 C 1.53949 * 87.02143 * 139.95439 * 17 15 14 19 19 H 1.09001 * 113.66987 * 220.07146 * 18 17 15 20 20 N 1.46503 * 113.61376 * 89.19951 * 18 17 15 21 21 C 1.34776 * 119.99498 * 107.46821 * 20 18 17 22 22 O 1.21503 * 120.00548 * 359.97438 * 21 20 18 23 23 O 1.34642 * 119.99604 * 180.02562 * 21 20 18 24 24 C 1.45193 * 117.00038 * 180.02562 * 23 21 20 25 25 C 1.52999 * 109.47333 * 59.99650 * 24 23 21 26 26 C 1.52999 * 109.47447 * 180.02562 * 24 23 21 27 27 C 1.53004 * 109.47251 * 299.99672 * 24 23 21 28 28 C 1.53780 * 113.61546 * 183.47383 * 15 14 13 29 29 C 1.38488 * 119.98111 * 0.24991 * 3 2 1 30 30 H 1.08995 * 109.47352 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47210 * 300.00715 * 1 2 3 32 32 H 1.09007 * 109.46771 * 60.00522 * 1 2 3 33 33 H 1.08994 * 109.46980 * 315.02652 * 5 4 3 34 34 H 0.96700 * 114.00199 * 60.00139 * 6 5 4 35 35 H 1.48501 * 110.00324 * 179.97438 * 7 5 4 36 36 H 1.48504 * 110.00422 * 301.32341 * 7 5 4 37 37 H 1.08003 * 119.89273 * 179.97438 * 8 4 3 38 38 H 1.08001 * 120.01809 * 180.02562 * 9 8 4 39 39 H 1.08998 * 109.47630 * 300.00514 * 14 13 11 40 40 H 1.09004 * 109.46770 * 60.00918 * 14 13 11 41 41 H 1.08998 * 113.61784 * 254.53646 * 17 15 14 42 42 H 1.09008 * 113.61454 * 25.43318 * 17 15 14 43 43 H 0.96991 * 119.99892 * 287.46947 * 20 18 17 44 44 H 1.08994 * 109.47266 * 60.00783 * 25 24 23 45 45 H 1.09009 * 109.46974 * 180.02562 * 25 24 23 46 46 H 1.08994 * 109.47355 * 299.99619 * 25 24 23 47 47 H 1.08997 * 109.47280 * 59.99119 * 26 24 23 48 48 H 1.08998 * 109.47524 * 180.02562 * 26 24 23 49 49 H 1.09002 * 109.46752 * 299.99970 * 26 24 23 50 50 H 1.09000 * 109.46738 * 59.99768 * 27 24 23 51 51 H 1.08992 * 109.47462 * 180.02562 * 27 24 23 52 52 H 1.09004 * 109.47147 * 300.00648 * 27 24 23 53 53 H 1.08997 * 113.61742 * 334.57051 * 28 15 14 54 54 H 1.09000 * 113.61158 * 105.47411 * 28 15 14 55 55 H 1.08000 * 120.10628 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 3.4324 1.2831 0.0005 5 6 4.2500 0.0171 0.0017 6 8 4.2164 -0.5727 -1.2995 7 14 6.0117 0.4161 0.4574 8 6 4.0660 2.5124 0.0000 9 6 3.3244 3.6756 -0.0005 10 6 1.9292 3.6132 -0.0011 11 6 1.1315 4.8567 -0.0011 12 8 -0.0819 4.7999 -0.0011 13 8 1.7498 6.0536 0.0051 14 6 0.9028 7.2330 0.0109 15 6 1.7770 8.4886 0.0168 16 1 2.5985 8.4290 0.7309 17 6 2.2122 8.9429 -1.3864 18 6 1.9682 10.3855 -0.9074 19 1 1.4996 11.0223 -1.6577 20 7 3.1427 11.0050 -0.2886 21 6 3.8206 11.9679 -0.9441 22 8 3.4578 12.3220 -2.0484 23 8 4.9004 12.5369 -0.3757 24 6 5.5810 13.5676 -1.1390 25 6 4.6115 14.7170 -1.4217 26 6 6.7743 14.0916 -0.3375 27 6 6.0749 12.9798 -2.4624 28 6 0.9748 9.7974 0.1086 29 6 1.2915 2.3722 0.0052 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5140 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 3.8361 -0.6820 0.7283 34 1 4.5703 -0.0052 -1.9979 35 1 6.8284 -0.8242 0.4627 36 1 6.5772 1.3930 -0.5076 37 1 5.1449 2.5618 0.0008 38 1 3.8225 4.6339 -0.0014 39 1 0.2737 7.2329 -0.8792 40 1 0.2734 7.2239 0.9008 41 1 3.2568 8.7271 -1.6108 42 1 1.5338 8.6250 -2.1782 43 1 3.4325 10.7221 0.5927 44 1 4.2598 15.1358 -0.4790 45 1 5.1225 15.4905 -1.9952 46 1 3.7618 14.3434 -1.9930 47 1 7.4648 13.2726 -0.1364 48 1 7.2850 14.8657 -0.9103 49 1 6.4228 14.5103 0.6055 50 1 5.2251 12.6061 -3.0336 51 1 6.5863 13.7533 -3.0352 52 1 6.7656 12.1609 -2.2610 53 1 -0.0426 9.7136 -0.2736 54 1 1.0219 10.2705 1.0894 55 1 0.2129 2.3173 0.0097 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_15498042_15734084.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:20:08 Heat of formation + Delta-G solvation = -173.373662 kcal Electronic energy + Delta-G solvation = -36632.961374 eV Core-core repulsion = 31603.683132 eV Total energy + Delta-G solvation = -5029.278242 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 394.196 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.04950 -41.88239 -41.14138 -40.30525 -38.73483 -38.08130 -37.67404 -37.37521 -35.36572 -34.11323 -33.20700 -31.43653 -29.86183 -28.39949 -28.37443 -28.30355 -27.55935 -26.74894 -24.80719 -23.84375 -23.48510 -23.04617 -22.01440 -21.16847 -20.38050 -19.67795 -19.34409 -18.77072 -18.03011 -17.62203 -17.60559 -17.41119 -17.20530 -17.15524 -16.94837 -16.59426 -16.43096 -15.92978 -15.88530 -15.53724 -15.42512 -15.28901 -15.19679 -15.01042 -14.61939 -14.46245 -14.33380 -13.82433 -13.66585 -13.63596 -13.48241 -13.36404 -13.28308 -13.06270 -12.96630 -12.92360 -12.87130 -12.57560 -12.53173 -12.35212 -12.33559 -12.18291 -12.06334 -11.93201 -11.81378 -11.69374 -11.51696 -11.40066 -11.20484 -11.12855 -10.59579 -10.27307 -10.19799 -9.41993 -4.88859 -0.61341 0.20504 1.11960 1.29218 1.30394 1.42231 1.60288 1.71899 1.98684 2.21548 2.50939 3.10050 3.25986 3.38178 3.43171 3.52789 3.59425 3.69200 3.73603 3.75066 3.80180 3.85866 3.93170 3.93988 4.03287 4.19748 4.24454 4.27231 4.29817 4.35040 4.40327 4.46920 4.50272 4.60695 4.60719 4.63381 4.71357 4.72805 4.74452 4.76151 4.82380 4.87433 4.87997 4.90192 5.01473 5.02439 5.06011 5.07398 5.12576 5.15791 5.26224 5.26551 5.32124 5.47226 5.47599 5.61035 6.20140 6.37601 6.51587 6.54675 7.32666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.320 6.320 3 C 0.129 3.871 4 C -0.117 4.117 5 C -0.085 4.085 6 O -0.545 6.545 7 Si 0.781 3.219 8 C -0.091 4.091 9 C -0.083 4.083 10 C -0.096 4.096 11 C 0.512 3.488 12 O -0.534 6.534 13 O -0.344 6.344 14 C 0.073 3.927 15 C -0.101 4.101 16 H 0.115 0.885 17 C -0.146 4.146 18 C 0.131 3.869 19 H 0.095 0.905 20 N -0.682 5.682 21 C 0.646 3.354 22 O -0.594 6.594 23 O -0.368 6.368 24 C 0.128 3.872 25 C -0.180 4.180 26 C -0.138 4.138 27 C -0.180 4.180 28 C -0.121 4.121 29 C -0.155 4.155 30 H 0.119 0.881 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.114 0.886 34 H 0.385 0.615 35 H -0.304 1.304 36 H -0.262 1.262 37 H 0.168 0.832 38 H 0.165 0.835 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.097 0.903 43 H 0.418 0.582 44 H 0.062 0.938 45 H 0.086 0.914 46 H 0.063 0.937 47 H 0.070 0.930 48 H 0.098 0.902 49 H 0.070 0.930 50 H 0.063 0.937 51 H 0.086 0.914 52 H 0.062 0.938 53 H 0.113 0.887 54 H 0.096 0.904 55 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.926 2.626 4.538 6.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.233 6.233 3 C 0.083 3.917 4 C -0.118 4.118 5 C -0.192 4.192 6 O -0.353 6.353 7 Si 0.685 3.315 8 C -0.108 4.108 9 C -0.102 4.102 10 C -0.097 4.097 11 C 0.358 3.642 12 O -0.425 6.425 13 O -0.260 6.260 14 C -0.001 4.001 15 C -0.119 4.119 16 H 0.133 0.867 17 C -0.185 4.185 18 C 0.027 3.973 19 H 0.113 0.887 20 N -0.342 5.342 21 C 0.400 3.600 22 O -0.484 6.484 23 O -0.283 6.283 24 C 0.091 3.909 25 C -0.238 4.238 26 C -0.195 4.195 27 C -0.237 4.237 28 C -0.159 4.159 29 C -0.174 4.174 30 H 0.137 0.863 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.132 0.868 34 H 0.234 0.766 35 H -0.233 1.233 36 H -0.188 1.188 37 H 0.185 0.815 38 H 0.183 0.817 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.116 0.884 43 H 0.255 0.745 44 H 0.081 0.919 45 H 0.105 0.895 46 H 0.082 0.918 47 H 0.089 0.911 48 H 0.116 0.884 49 H 0.089 0.911 50 H 0.082 0.918 51 H 0.105 0.895 52 H 0.081 0.919 53 H 0.131 0.869 54 H 0.115 0.885 55 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.077 2.208 4.071 5.561 hybrid contribution -1.057 -0.178 -1.119 1.550 sum 2.020 2.030 2.952 4.113 Atomic orbital electron populations 1.23352 0.76693 1.05675 1.02068 1.86161 1.22958 1.25976 1.88181 1.18779 0.92043 0.84272 0.96560 1.20132 0.91140 0.96967 1.03604 1.25326 1.11293 0.94558 0.88029 1.86634 1.85555 1.45920 1.17204 0.93946 0.70470 0.78412 0.88720 1.21249 1.01615 0.89989 0.97947 1.21561 0.91250 1.00527 0.96824 1.18949 0.94250 0.89431 1.07119 1.21305 0.86108 0.84737 0.72035 1.90839 1.16216 1.88348 1.47141 1.86524 1.41502 1.14496 1.83456 1.23344 0.92687 0.80862 1.03171 1.22671 0.99277 0.91124 0.98819 0.86698 1.23592 1.02801 0.94887 0.97175 1.21842 0.84994 0.93672 0.96804 0.88719 1.44340 1.29798 1.37997 1.22037 1.18319 0.79419 0.79560 0.82748 1.90909 1.70434 1.66068 1.21020 1.86310 1.39963 1.52555 1.49443 1.22350 0.92140 0.84862 0.91509 1.22476 1.00472 0.97987 1.02822 1.21891 0.94843 1.02053 1.00684 1.22474 1.02187 1.02353 0.96722 1.23330 0.98847 0.93149 1.00571 1.21381 1.01207 0.90799 1.04044 0.86280 0.91627 0.92261 0.86833 0.76601 1.23254 1.18759 0.81532 0.81742 0.90841 0.90363 0.91220 0.88437 0.74476 0.91869 0.89526 0.91809 0.91107 0.88379 0.91130 0.91825 0.89536 0.91892 0.86852 0.88530 0.84065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 9.81 113.37 1.11 1.10 16 2 O -0.32 -1.62 9.81 -92.53 -0.91 -2.52 16 3 C 0.13 0.51 6.65 22.47 0.15 0.65 16 4 C -0.12 -0.07 5.28 -19.71 -0.10 -0.17 16 5 C -0.08 -0.03 2.37 71.24 0.17 0.14 16 6 O -0.55 -2.17 12.88 -148.98 -1.92 -4.09 16 7 Si 0.78 -3.01 30.24 68.60 2.07 -0.93 16 8 C -0.09 0.31 8.64 22.21 0.19 0.50 16 9 C -0.08 0.18 9.61 22.54 0.22 0.40 16 10 C -0.10 -0.27 5.87 -20.11 -0.12 -0.38 16 11 C 0.51 2.58 7.90 70.34 0.56 3.13 16 12 O -0.53 -5.66 16.13 19.92 0.32 -5.33 16 13 O -0.34 -0.32 9.47 -56.19 -0.53 -0.85 16 14 C 0.07 -0.18 5.30 71.98 0.38 0.20 16 15 C -0.10 0.64 3.89 -10.27 -0.04 0.60 16 16 H 0.11 -0.91 8.14 -2.38 -0.02 -0.93 16 17 C -0.15 0.53 7.44 31.18 0.23 0.77 16 18 C 0.13 -0.37 4.33 45.58 0.20 -0.17 16 19 H 0.09 0.10 7.46 -2.39 -0.02 0.08 16 20 N -0.68 0.89 5.27 -567.33 -2.99 -2.10 16 21 C 0.65 3.56 8.06 129.79 1.05 4.60 16 22 O -0.59 -6.66 11.48 19.83 0.23 -6.43 16 23 O -0.37 -1.60 9.94 -55.51 -0.55 -2.15 16 24 C 0.13 0.28 1.13 -10.79 -0.01 0.26 16 25 C -0.18 -0.47 8.37 71.98 0.60 0.13 16 26 C -0.14 0.40 8.85 71.98 0.64 1.03 16 27 C -0.18 -0.47 8.37 71.98 0.60 0.13 16 28 C -0.12 0.94 7.39 31.12 0.23 1.17 16 29 C -0.16 -0.61 8.58 22.64 0.19 -0.41 16 30 H 0.12 -0.50 8.14 -2.39 -0.02 -0.52 16 31 H 0.07 -0.16 7.65 -2.39 -0.02 -0.18 16 32 H 0.06 -0.07 7.67 -2.38 -0.02 -0.09 16 33 H 0.11 0.15 7.82 -2.39 -0.02 0.13 16 34 H 0.38 -1.06 8.70 -74.06 -0.64 -1.70 16 35 H -0.30 -1.38 7.11 99.48 0.71 -0.68 16 36 H -0.26 0.78 6.68 99.48 0.66 1.45 16 37 H 0.17 -1.39 4.83 -2.91 -0.01 -1.40 16 38 H 0.17 -1.05 7.61 -2.91 -0.02 -1.08 16 39 H 0.07 -0.12 7.87 -2.39 -0.02 -0.14 16 40 H 0.08 -0.20 8.14 -2.38 -0.02 -0.22 16 41 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 42 H 0.10 -0.37 7.92 -2.38 -0.02 -0.39 16 43 H 0.42 -2.52 8.81 -92.71 -0.82 -3.34 16 44 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 45 H 0.09 -0.06 8.14 -2.38 -0.02 -0.08 16 46 H 0.06 0.51 5.88 -2.39 -0.01 0.49 16 47 H 0.07 -0.23 8.14 -2.39 -0.02 -0.24 16 48 H 0.10 -0.58 8.14 -2.39 -0.02 -0.60 16 49 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 50 H 0.06 0.51 5.88 -2.39 -0.01 0.50 16 51 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 52 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 53 H 0.11 -1.03 8.10 -2.39 -0.02 -1.05 16 54 H 0.10 -0.93 8.14 -2.39 -0.02 -0.95 16 55 H 0.14 0.56 5.88 -2.91 -0.02 0.55 16 Total: 0.00 -22.79 446.63 1.43 -21.36 By element: Atomic # 1 Polarization: -10.11 SS G_CDS: -0.53 Total: -10.64 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: 6.24 Total: 13.69 kcal Atomic # 7 Polarization: 0.89 SS G_CDS: -2.99 Total: -2.10 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -3.36 Total: -21.38 kcal Atomic # 14 Polarization: -3.01 SS G_CDS: 2.07 Total: -0.93 kcal Total: -22.79 1.43 -21.36 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_15498042_15734084.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.012 kcal (2) G-P(sol) polarization free energy of solvation -22.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds