Wall clock time and date at job start Sat Mar 6 2021 05:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35909 * 116.99952 * 2 1 4 4 C 1.38817 * 119.97950 * 179.97438 * 3 2 1 5 5 C 1.50694 * 119.87549 * 0.02562 * 4 3 2 6 6 O 1.42901 * 109.46946 * 75.00231 * 5 4 3 7 7 Si 1.86308 * 109.46999 * 194.99749 * 5 4 3 8 8 C 1.38302 * 120.24293 * 180.02562 * 4 3 2 9 9 C 1.37944 * 120.21733 * 0.04774 * 8 4 3 10 10 C 1.39659 * 119.96094 * 359.69895 * 9 8 4 11 11 C 1.47736 * 120.12380 * 180.27880 * 10 9 8 12 12 O 1.21467 * 120.00049 * 180.25003 * 11 10 9 13 13 O 1.34709 * 120.00124 * 0.25372 * 11 10 9 14 14 C 1.45196 * 117.00209 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47298 * 179.97438 * 14 13 11 16 16 H 1.08996 * 112.85147 * 314.66724 * 15 14 13 17 17 C 1.53781 * 113.61561 * 85.86671 * 15 14 13 18 18 C 1.53945 * 87.02334 * 139.95166 * 17 15 14 19 19 H 1.09005 * 113.61678 * 89.19568 * 18 17 15 20 20 N 1.46500 * 113.67085 * 220.06826 * 18 17 15 21 21 C 1.34771 * 120.00063 * 252.56264 * 20 18 17 22 22 O 1.21514 * 120.00453 * 359.97438 * 21 20 18 23 23 O 1.34640 * 120.00201 * 179.97438 * 21 20 18 24 24 C 1.45195 * 117.00092 * 179.97438 * 23 21 20 25 25 C 1.53005 * 109.47590 * 60.00081 * 24 23 21 26 26 C 1.53007 * 109.47296 * 179.97438 * 24 23 21 27 27 C 1.53004 * 109.47274 * 299.99744 * 24 23 21 28 28 C 1.53784 * 113.61239 * 183.47150 * 15 14 13 29 29 C 1.38491 * 119.98378 * 0.02562 * 3 2 1 30 30 H 1.08996 * 109.47799 * 179.97438 * 1 2 3 31 31 H 1.09010 * 109.46957 * 299.99587 * 1 2 3 32 32 H 1.09002 * 109.47432 * 59.99002 * 1 2 3 33 33 H 1.08992 * 109.47438 * 314.99732 * 5 4 3 34 34 H 0.96704 * 113.99961 * 180.02562 * 6 5 4 35 35 H 1.48495 * 109.99732 * 178.68359 * 7 5 4 36 36 H 1.48503 * 109.99934 * 300.00263 * 7 5 4 37 37 H 1.08005 * 119.88466 * 180.02562 * 8 4 3 38 38 H 1.07994 * 120.01863 * 179.97438 * 9 8 4 39 39 H 1.09003 * 109.47141 * 300.00041 * 14 13 11 40 40 H 1.08999 * 109.47135 * 59.99694 * 14 13 11 41 41 H 1.09002 * 113.61072 * 254.53362 * 17 15 14 42 42 H 1.09001 * 113.61460 * 25.42958 * 17 15 14 43 43 H 0.97003 * 119.99907 * 72.55143 * 20 18 17 44 44 H 1.08995 * 109.46644 * 59.99488 * 25 24 23 45 45 H 1.09001 * 109.47627 * 180.02562 * 25 24 23 46 46 H 1.09008 * 109.46737 * 300.00354 * 25 24 23 47 47 H 1.08999 * 109.46732 * 59.99917 * 26 24 23 48 48 H 1.09001 * 109.47155 * 179.97438 * 26 24 23 49 49 H 1.08999 * 109.46976 * 299.99756 * 26 24 23 50 50 H 1.09006 * 109.46515 * 60.00643 * 27 24 23 51 51 H 1.09001 * 109.47378 * 179.97438 * 27 24 23 52 52 H 1.08995 * 109.47046 * 300.00076 * 27 24 23 53 53 H 1.08994 * 113.61586 * 334.56381 * 28 15 14 54 54 H 1.09003 * 113.61190 * 105.47283 * 28 15 14 55 55 H 1.08002 * 120.10279 * 359.94490 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4323 1.2831 0.0005 5 6 4.2498 0.0172 0.0005 6 8 4.2159 -0.5717 -1.3010 7 14 6.0119 0.4160 0.4558 8 6 4.0658 2.5125 0.0011 9 6 3.3243 3.6757 0.0021 10 6 1.9291 3.6133 -0.0038 11 6 1.1313 4.8568 -0.0090 12 8 -0.0820 4.8000 -0.0095 13 8 1.7495 6.0536 -0.0132 14 6 0.9027 7.2330 -0.0187 15 6 1.7769 8.4887 -0.0223 16 1 2.5973 8.4353 0.6933 17 6 2.2141 8.9310 -1.4287 18 6 1.9693 10.3775 -0.9625 19 1 2.8426 10.8425 -0.5047 20 7 1.3411 11.2249 -1.9791 21 6 2.0629 12.1768 -2.6029 22 8 3.2347 12.3327 -2.3218 23 8 1.4856 12.9552 -3.5376 24 6 2.3232 13.9600 -4.1676 25 6 3.4984 13.2770 -4.8701 26 6 1.4995 14.7399 -5.1945 27 6 2.8546 14.9217 -3.1029 28 6 0.9744 9.7981 0.0571 29 6 1.2914 2.3722 0.0005 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5140 -0.8899 33 1 3.8364 -0.6824 0.7268 34 1 4.7220 -1.3924 -1.3747 35 1 6.8215 -0.8284 0.4904 36 1 6.5872 1.3691 -0.5269 37 1 5.1447 2.5619 0.0011 38 1 3.8223 4.6339 0.0029 39 1 0.2742 7.2249 -0.9093 40 1 0.2725 7.2320 0.8706 41 1 3.2590 8.7133 -1.6497 42 1 1.5368 8.6063 -2.2187 43 1 0.4055 11.1006 -2.2034 44 1 3.1198 12.5919 -5.6286 45 1 4.1275 14.0314 -5.3427 46 1 4.0854 12.7211 -4.1389 47 1 0.6620 15.2264 -4.6944 48 1 2.1282 15.4945 -5.6671 49 1 1.1213 14.0545 -5.9530 50 1 3.4417 14.3658 -2.3718 51 1 3.4838 15.6758 -3.5758 52 1 2.0174 15.4083 -2.6025 53 1 -0.0423 9.7111 -0.3260 54 1 1.0201 10.2797 1.0339 55 1 0.2128 2.3173 0.0001 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_15498042_15734238.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:20:11 Heat of formation + Delta-G solvation = -174.606197 kcal Electronic energy + Delta-G solvation = -36382.190764 eV Core-core repulsion = 31352.859075 eV Total energy + Delta-G solvation = -5029.331689 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 394.196 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.01829 -41.85868 -41.12075 -40.23488 -38.67247 -38.09800 -37.68298 -37.38253 -35.41404 -34.25023 -33.33451 -31.44252 -29.85023 -28.39767 -28.38329 -28.31920 -27.56123 -26.74991 -24.90050 -23.74847 -23.47270 -22.46148 -21.96107 -21.41919 -20.58216 -19.68811 -19.09699 -18.60031 -18.53643 -17.81724 -17.58025 -17.43227 -17.20964 -17.16785 -16.96622 -16.72389 -16.43199 -16.24976 -15.83177 -15.58690 -15.41257 -15.34580 -14.84108 -14.69407 -14.57438 -14.43063 -14.02874 -13.90961 -13.75653 -13.54077 -13.49141 -13.37960 -13.21502 -13.03179 -12.92433 -12.88404 -12.86217 -12.77236 -12.54355 -12.46148 -12.31490 -12.20320 -12.17930 -11.97145 -11.83632 -11.79314 -11.56188 -11.40937 -11.28333 -11.11576 -10.46287 -10.26778 -10.16337 -9.42039 -4.90264 -0.61669 0.20412 1.14527 1.27455 1.30259 1.44047 1.62256 1.72075 1.94525 2.20673 2.48397 3.11838 3.24847 3.37330 3.41314 3.53177 3.65056 3.72559 3.73604 3.75490 3.78827 3.84008 3.92825 3.98222 4.02753 4.16915 4.20750 4.24682 4.26410 4.28524 4.39383 4.48490 4.49837 4.59611 4.60469 4.62887 4.69680 4.70064 4.74748 4.76779 4.78370 4.84335 4.85928 4.92405 4.95559 5.03648 5.06400 5.07343 5.14542 5.17076 5.25340 5.25548 5.31625 5.46278 5.49670 5.58388 6.18733 6.38467 6.54638 6.59176 7.32477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.319 6.319 3 C 0.129 3.871 4 C -0.082 4.082 5 C -0.087 4.087 6 O -0.555 6.555 7 Si 0.777 3.223 8 C -0.092 4.092 9 C -0.084 4.084 10 C -0.097 4.097 11 C 0.514 3.486 12 O -0.532 6.532 13 O -0.344 6.344 14 C 0.076 3.924 15 C -0.098 4.098 16 H 0.118 0.882 17 C -0.148 4.148 18 C 0.135 3.865 19 H 0.110 0.890 20 N -0.691 5.691 21 C 0.643 3.357 22 O -0.594 6.594 23 O -0.371 6.371 24 C 0.127 3.873 25 C -0.180 4.180 26 C -0.138 4.138 27 C -0.179 4.179 28 C -0.121 4.121 29 C -0.154 4.154 30 H 0.121 0.879 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.394 0.606 35 H -0.286 1.286 36 H -0.281 1.281 37 H 0.163 0.837 38 H 0.166 0.834 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.089 0.911 43 H 0.417 0.583 44 H 0.060 0.940 45 H 0.086 0.914 46 H 0.064 0.936 47 H 0.069 0.931 48 H 0.098 0.902 49 H 0.068 0.932 50 H 0.064 0.936 51 H 0.086 0.914 52 H 0.062 0.938 53 H 0.106 0.894 54 H 0.097 0.903 55 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.328 0.522 2.820 2.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.232 6.232 3 C 0.083 3.917 4 C -0.083 4.083 5 C -0.195 4.195 6 O -0.365 6.365 7 Si 0.680 3.320 8 C -0.109 4.109 9 C -0.102 4.102 10 C -0.098 4.098 11 C 0.360 3.640 12 O -0.424 6.424 13 O -0.260 6.260 14 C 0.002 3.998 15 C -0.117 4.117 16 H 0.136 0.864 17 C -0.186 4.186 18 C 0.032 3.968 19 H 0.128 0.872 20 N -0.350 5.350 21 C 0.396 3.604 22 O -0.485 6.485 23 O -0.285 6.285 24 C 0.090 3.910 25 C -0.237 4.237 26 C -0.195 4.195 27 C -0.237 4.237 28 C -0.159 4.159 29 C -0.173 4.173 30 H 0.140 0.860 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.244 0.756 35 H -0.213 1.213 36 H -0.208 1.208 37 H 0.180 0.820 38 H 0.184 0.816 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.107 0.893 43 H 0.254 0.746 44 H 0.079 0.921 45 H 0.105 0.895 46 H 0.083 0.917 47 H 0.088 0.912 48 H 0.117 0.883 49 H 0.087 0.913 50 H 0.083 0.917 51 H 0.105 0.895 52 H 0.081 0.919 53 H 0.124 0.876 54 H 0.116 0.884 55 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.405 1.003 2.530 2.752 hybrid contribution -1.102 -1.013 -1.088 1.850 sum -0.696 -0.010 1.442 1.601 Atomic orbital electron populations 1.23368 0.76599 1.05785 1.02081 1.86128 1.23038 1.25814 1.88222 1.18745 0.91889 0.84474 0.96614 1.19238 0.90611 0.95503 1.02970 1.25062 1.11568 0.94774 0.88049 1.86558 1.75426 1.44380 1.30154 0.94032 0.70755 0.79676 0.87562 1.21199 1.01470 0.90212 0.98041 1.21550 0.91399 1.00369 0.96907 1.18947 0.94132 0.89597 1.07156 1.21231 0.86074 0.84632 0.72039 1.90832 1.16084 1.88323 1.47137 1.86525 1.41528 1.14507 1.83460 1.23291 0.92502 0.80721 1.03247 1.22335 0.99563 0.91023 0.98750 0.86403 1.23648 1.02882 0.94976 0.97125 1.22605 0.97701 0.88492 0.88042 0.87234 1.44788 1.14888 1.34283 1.41004 1.18436 0.83849 0.79496 0.78577 1.90901 1.16538 1.72869 1.68164 1.86313 1.44781 1.46520 1.50924 1.22353 0.90352 0.85579 0.92678 1.22473 0.98182 1.02093 1.00958 1.21893 1.00602 0.99856 0.97137 1.22470 1.02181 0.99533 0.99482 1.23358 0.99029 0.93338 1.00206 1.21381 1.01271 0.90672 1.03992 0.86041 0.91505 0.92414 0.89673 0.75584 1.21287 1.20792 0.82026 0.81617 0.90820 0.90155 0.90930 0.89282 0.74610 0.92086 0.89471 0.91743 0.91154 0.88321 0.91280 0.91714 0.89488 0.91902 0.87600 0.88404 0.83735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 9.81 113.37 1.11 1.10 16 2 O -0.32 -1.73 9.81 -92.52 -0.91 -2.64 16 3 C 0.13 0.73 6.65 22.47 0.15 0.87 16 4 C -0.08 -0.29 5.31 -19.71 -0.10 -0.40 16 5 C -0.09 -0.09 2.36 71.23 0.17 0.08 16 6 O -0.56 -2.28 12.86 -148.98 -1.92 -4.20 16 7 Si 0.78 -2.41 30.19 68.60 2.07 -0.33 16 8 C -0.09 -0.01 8.64 22.22 0.19 0.18 16 9 C -0.08 -0.03 9.61 22.54 0.22 0.19 16 10 C -0.10 -0.43 5.87 -20.11 -0.12 -0.55 16 11 C 0.51 3.10 7.90 70.33 0.56 3.65 16 12 O -0.53 -5.89 16.13 19.94 0.32 -5.57 16 13 O -0.34 -0.69 9.47 -56.19 -0.53 -1.22 16 14 C 0.08 -0.14 5.30 71.98 0.38 0.24 16 15 C -0.10 0.53 4.01 -10.27 -0.04 0.48 16 16 H 0.12 -0.74 8.14 -2.39 -0.02 -0.76 16 17 C -0.15 0.43 7.45 31.18 0.23 0.66 16 18 C 0.14 -0.32 4.24 45.58 0.19 -0.13 16 19 H 0.11 0.08 7.46 -2.38 -0.02 0.06 16 20 N -0.69 0.14 5.36 -567.33 -3.04 -2.90 16 21 C 0.64 4.19 8.06 129.79 1.05 5.23 16 22 O -0.59 -6.98 11.48 19.80 0.23 -6.75 16 23 O -0.37 -2.08 9.94 -55.50 -0.55 -2.63 16 24 C 0.13 0.40 1.13 -10.79 -0.01 0.39 16 25 C -0.18 -0.64 8.37 71.98 0.60 -0.04 16 26 C -0.14 0.25 8.85 71.98 0.64 0.89 16 27 C -0.18 -0.58 8.37 71.98 0.60 0.03 16 28 C -0.12 0.89 7.40 31.12 0.23 1.12 16 29 C -0.15 -0.82 8.58 22.64 0.19 -0.62 16 30 H 0.12 -0.58 8.14 -2.39 -0.02 -0.60 16 31 H 0.07 -0.17 7.66 -2.38 -0.02 -0.19 16 32 H 0.06 -0.05 7.66 -2.39 -0.02 -0.07 16 33 H 0.09 -0.06 7.82 -2.39 -0.02 -0.07 16 34 H 0.39 -1.59 8.74 -74.05 -0.65 -2.24 16 35 H -0.29 -0.37 7.11 99.48 0.71 0.33 16 36 H -0.28 -0.47 6.74 99.48 0.67 0.20 16 37 H 0.16 -0.66 4.87 -2.91 -0.01 -0.68 16 38 H 0.17 -0.69 7.61 -2.91 -0.02 -0.71 16 39 H 0.07 -0.10 7.87 -2.39 -0.02 -0.12 16 40 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 41 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 42 H 0.09 -0.25 7.92 -2.39 -0.02 -0.27 16 43 H 0.42 -1.94 8.84 -92.71 -0.82 -2.76 16 44 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 45 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 46 H 0.06 0.57 5.88 -2.38 -0.01 0.55 16 47 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 48 H 0.10 -0.50 8.14 -2.39 -0.02 -0.52 16 49 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 50 H 0.06 0.54 5.88 -2.38 -0.01 0.53 16 51 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 52 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 53 H 0.11 -1.00 8.08 -2.39 -0.02 -1.02 16 54 H 0.10 -0.85 8.14 -2.39 -0.02 -0.87 16 55 H 0.15 0.67 5.88 -2.91 -0.02 0.66 16 Total: 0.00 -23.11 446.86 1.38 -21.74 By element: Atomic # 1 Polarization: -8.34 SS G_CDS: -0.53 Total: -8.87 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: 6.24 Total: 13.38 kcal Atomic # 7 Polarization: 0.14 SS G_CDS: -3.04 Total: -2.90 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -3.36 Total: -23.01 kcal Atomic # 14 Polarization: -2.41 SS G_CDS: 2.07 Total: -0.33 kcal Total: -23.11 1.38 -21.74 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_15498042_15734238.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.868 kcal (2) G-P(sol) polarization free energy of solvation -23.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds