Wall clock time and date at job start Sat Mar 6 2021 05:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35910 * 117.00159 * 2 1 4 4 C 1.38815 * 119.98288 * 179.97438 * 3 2 1 5 5 C 1.50697 * 119.87613 * 0.04158 * 4 3 2 6 6 O 1.42904 * 109.47218 * 74.97995 * 5 4 3 7 7 Si 1.86305 * 109.47065 * 194.97686 * 5 4 3 8 8 C 1.38302 * 120.24950 * 180.02562 * 4 3 2 9 9 C 1.37956 * 120.20959 * 0.02562 * 8 4 3 10 10 C 1.39658 * 119.96010 * 359.97438 * 9 8 4 11 11 C 1.47740 * 120.11859 * 180.02562 * 10 9 8 12 12 O 1.21468 * 119.99884 * 180.02562 * 11 10 9 13 13 O 1.34717 * 120.00206 * 359.97438 * 11 10 9 14 14 C 1.45200 * 117.00119 * 180.02562 * 13 11 10 15 15 C 1.52992 * 109.47448 * 180.02562 * 14 13 11 16 16 H 1.08998 * 109.46862 * 305.00676 * 15 14 13 17 17 C 1.53006 * 109.47223 * 64.99823 * 15 14 13 18 18 C 1.52997 * 109.47164 * 180.02562 * 17 15 14 19 19 C 1.53002 * 109.46978 * 299.99874 * 18 17 15 20 20 H 1.08992 * 109.47056 * 300.00064 * 19 18 17 21 21 O 1.42903 * 109.46797 * 180.02562 * 19 18 17 22 22 C 1.52996 * 109.46891 * 60.00410 * 19 18 17 23 23 C 1.52997 * 109.47482 * 185.00111 * 15 14 13 24 24 C 1.38487 * 119.98072 * 0.29641 * 3 2 1 25 25 H 1.09000 * 109.46928 * 60.00056 * 1 2 3 26 26 H 1.08995 * 109.47064 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47035 * 300.00239 * 1 2 3 28 28 H 1.08997 * 109.47177 * 314.97598 * 5 4 3 29 29 H 0.96691 * 114.00304 * 180.02562 * 6 5 4 30 30 H 1.48497 * 110.00139 * 299.99871 * 7 5 4 31 31 H 1.48502 * 109.99876 * 61.32157 * 7 5 4 32 32 H 1.07990 * 119.89495 * 179.97438 * 8 4 3 33 33 H 1.07996 * 120.01957 * 179.97438 * 9 8 4 34 34 H 1.09001 * 109.46923 * 59.99784 * 14 13 11 35 35 H 1.09004 * 109.46960 * 300.00735 * 14 13 11 36 36 H 1.09001 * 109.47002 * 60.00080 * 17 15 14 37 37 H 1.09000 * 109.47050 * 300.00346 * 17 15 14 38 38 H 1.09002 * 109.47045 * 180.02562 * 18 17 15 39 39 H 1.09001 * 109.47375 * 59.99966 * 18 17 15 40 40 H 0.96699 * 114.00345 * 60.00309 * 21 19 18 41 41 H 1.09004 * 109.47368 * 179.97438 * 22 19 18 42 42 H 1.09001 * 109.47372 * 59.99964 * 22 19 18 43 43 H 1.09002 * 109.47153 * 59.99783 * 23 15 14 44 44 H 1.09001 * 109.46832 * 299.99974 * 23 15 14 45 45 H 1.07998 * 120.10717 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 3.4324 1.2831 0.0005 5 6 4.2500 0.0173 0.0002 6 8 4.2156 -0.5717 -1.3014 7 14 6.0121 0.4160 0.4549 8 6 4.0660 2.5125 0.0011 9 6 3.3243 3.6757 0.0016 10 6 1.9291 3.6133 0.0011 11 6 1.1314 4.8568 0.0011 12 8 -0.0820 4.7999 0.0011 13 8 1.7496 6.0537 0.0021 14 6 0.9027 7.2331 0.0026 15 6 1.7768 8.4888 0.0032 16 1 2.4682 8.4497 0.8449 17 6 2.5686 8.5596 -1.3042 18 6 3.4432 9.8149 -1.3034 19 6 2.5557 11.0547 -1.1769 20 1 1.8644 11.0941 -2.0186 21 8 3.3726 12.2273 -1.1767 22 6 1.7640 10.9839 0.1304 23 6 0.8889 9.7283 0.1294 24 6 1.2915 2.3722 0.0062 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.8367 -0.6824 0.7266 29 1 4.7216 -1.3923 -1.3753 30 1 6.5871 1.3691 -0.5279 31 1 6.0648 0.9998 1.8194 32 1 5.1448 2.5620 0.0019 33 1 3.8223 4.6340 0.0024 34 1 0.2731 7.2279 0.8924 35 1 0.2736 7.2291 -0.8875 36 1 1.8773 8.5985 -2.1460 37 1 3.2012 7.6765 -1.3941 38 1 4.0069 9.8656 -2.2349 39 1 4.1346 9.7756 -0.4616 40 1 3.9034 12.3369 -1.9775 41 1 1.1320 11.8674 0.2209 42 1 2.4554 10.9446 0.9722 43 1 0.3249 9.6779 1.0608 44 1 0.1976 9.7673 -0.7124 45 1 0.2129 2.3173 0.0106 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_15498042_16737258.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:45:03 Heat of formation + Delta-G solvation = -184.641046 kcal Electronic energy + Delta-G solvation = -27393.641232 eV Core-core repulsion = 23342.821500 eV Total energy + Delta-G solvation = -4050.819732 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.154 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.90653 -41.08301 -40.08506 -38.65776 -37.83819 -37.39779 -36.56533 -33.33466 -31.97609 -31.92233 -31.39153 -28.53601 -27.94816 -26.40514 -24.00489 -23.64736 -23.51169 -22.37315 -21.86371 -20.97899 -19.65955 -18.43871 -18.35507 -18.20331 -17.52152 -17.43937 -17.15082 -16.88171 -16.71565 -16.45726 -15.96064 -15.58314 -15.43129 -15.22307 -14.99553 -14.49872 -14.47333 -14.22478 -14.02099 -13.83065 -13.75354 -13.51677 -13.31767 -13.18501 -12.86933 -12.77146 -12.60426 -12.23911 -12.22509 -12.14845 -11.94132 -11.90841 -11.77012 -11.60780 -11.47292 -11.18875 -10.77377 -10.31856 -10.23917 -9.40378 -5.02373 -0.56467 0.18538 1.22715 1.39012 1.46888 1.60773 1.90131 2.16164 2.51154 3.09134 3.26488 3.41634 3.52666 3.57240 3.65154 3.73414 3.78634 3.94313 3.98103 3.99586 4.06491 4.14720 4.17944 4.19084 4.20390 4.25820 4.29275 4.36815 4.40131 4.41233 4.49182 4.53135 4.64343 4.69806 4.84372 4.90730 4.96676 4.99215 5.04834 5.06595 5.06947 5.10775 5.22168 5.28988 5.38112 5.40382 6.19015 6.64387 6.66409 6.66836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.300 6.300 3 C 0.146 3.854 4 C -0.072 4.072 5 C -0.066 4.066 6 O -0.541 6.541 7 Si 0.685 3.315 8 C -0.098 4.098 9 C -0.093 4.093 10 C -0.081 4.081 11 C 0.511 3.489 12 O -0.501 6.501 13 O -0.348 6.348 14 C 0.072 3.928 15 C -0.089 4.089 16 H 0.086 0.914 17 C -0.113 4.113 18 C -0.152 4.152 19 C 0.102 3.898 20 H 0.055 0.945 21 O -0.569 6.569 22 C -0.111 4.111 23 C -0.110 4.110 24 C -0.146 4.146 25 H 0.059 0.941 26 H 0.106 0.894 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.382 0.618 30 H -0.248 1.248 31 H -0.252 1.252 32 H 0.137 0.863 33 H 0.145 0.855 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.379 0.621 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.353 -2.794 -0.060 3.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.213 6.213 3 C 0.100 3.900 4 C -0.073 4.073 5 C -0.177 4.177 6 O -0.347 6.347 7 Si 0.586 3.414 8 C -0.115 4.115 9 C -0.111 4.111 10 C -0.082 4.082 11 C 0.356 3.644 12 O -0.390 6.390 13 O -0.265 6.265 14 C -0.002 4.002 15 C -0.107 4.107 16 H 0.105 0.895 17 C -0.150 4.150 18 C -0.190 4.190 19 C 0.044 3.956 20 H 0.073 0.927 21 O -0.375 6.375 22 C -0.148 4.148 23 C -0.148 4.148 24 C -0.165 4.165 25 H 0.078 0.922 26 H 0.125 0.875 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.230 0.770 30 H -0.173 1.173 31 H -0.177 1.177 32 H 0.154 0.846 33 H 0.163 0.837 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.226 0.774 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.964 -1.733 0.639 2.696 hybrid contribution -0.801 0.200 -0.576 1.006 sum 1.163 -1.533 0.063 1.925 Atomic orbital electron populations 1.23200 0.77714 1.04684 1.01761 1.86166 1.21717 1.25401 1.87981 1.18531 0.91230 0.84509 0.95753 1.18995 0.90723 0.94470 1.03144 1.24588 1.09182 0.94591 0.89322 1.86508 1.76336 1.43511 1.28337 0.95129 0.78654 0.87632 0.80022 1.20853 0.99905 0.91195 0.99593 1.21290 0.92196 0.99238 0.98364 1.18850 0.93242 0.90128 1.06027 1.21045 0.86408 0.84037 0.72946 1.90853 1.14843 1.87913 1.45367 1.86509 1.41454 1.14567 1.83924 1.23221 0.92529 0.81322 1.03112 1.21278 0.97588 0.91916 0.99964 0.89517 1.21539 0.98713 0.98059 0.96710 1.22277 0.98826 0.95017 1.02835 1.21848 0.91560 0.84119 0.98109 0.92693 1.86518 1.61200 1.44294 1.45480 1.21445 0.98505 0.97843 0.97050 1.21484 0.97591 0.92598 1.03122 1.21368 1.01284 0.90383 1.03447 0.92216 0.87528 0.92310 0.90440 0.77038 1.17278 1.17685 0.84557 0.83703 0.90688 0.90759 0.91656 0.90720 0.91466 0.90891 0.77365 0.90744 0.90901 0.90629 0.91135 0.83390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 9.81 101.05 0.99 0.98 16 2 O -0.30 -0.75 9.81 -19.46 -0.19 -0.94 16 3 C 0.15 0.45 6.65 -39.28 -0.26 0.19 16 4 C -0.07 -0.19 5.31 -104.39 -0.55 -0.75 16 5 C -0.07 -0.03 2.36 36.00 0.08 0.05 16 6 O -0.54 -0.44 12.86 -35.23 -0.45 -0.90 16 7 Si 0.68 -0.93 30.19 -169.99 -5.13 -6.07 16 8 C -0.10 -0.19 8.64 -39.66 -0.34 -0.53 16 9 C -0.09 -0.15 9.61 -39.15 -0.38 -0.53 16 10 C -0.08 -0.23 5.87 -105.00 -0.62 -0.85 16 11 C 0.51 1.83 7.90 34.61 0.27 2.10 16 12 O -0.50 -2.89 16.13 -19.24 -0.31 -3.20 16 13 O -0.35 -0.68 9.01 -40.54 -0.37 -1.05 16 14 C 0.07 0.03 4.85 37.15 0.18 0.21 16 15 C -0.09 0.08 2.43 -90.62 -0.22 -0.14 16 16 H 0.09 -0.06 8.14 -51.93 -0.42 -0.48 16 17 C -0.11 0.11 5.10 -26.73 -0.14 -0.03 16 18 C -0.15 0.15 5.54 -26.73 -0.15 0.00 16 19 C 0.10 -0.02 3.47 -26.73 -0.09 -0.11 16 20 H 0.06 -0.04 8.14 -51.93 -0.42 -0.46 16 21 O -0.57 -0.61 13.32 -35.23 -0.47 -1.08 16 22 C -0.11 0.03 5.58 -26.71 -0.15 -0.12 16 23 C -0.11 0.16 5.21 -26.71 -0.14 0.02 16 24 C -0.15 -0.41 8.58 -39.01 -0.33 -0.75 16 25 H 0.06 -0.05 7.67 -51.93 -0.40 -0.45 16 26 H 0.11 -0.26 8.14 -51.93 -0.42 -0.69 16 27 H 0.06 -0.08 7.65 -51.93 -0.40 -0.48 16 28 H 0.08 -0.03 7.82 -51.93 -0.41 -0.43 16 29 H 0.38 -1.64 8.74 45.56 0.40 -1.24 16 30 H -0.25 -0.26 6.74 56.52 0.38 0.12 16 31 H -0.25 -0.26 7.11 56.52 0.40 0.14 16 32 H 0.14 0.10 4.87 -52.49 -0.26 -0.15 16 33 H 0.15 -0.02 7.61 -52.49 -0.40 -0.42 16 34 H 0.07 0.03 8.14 -51.93 -0.42 -0.39 16 35 H 0.07 0.04 8.14 -51.93 -0.42 -0.39 16 36 H 0.06 -0.07 8.14 -51.93 -0.42 -0.49 16 37 H 0.07 -0.03 7.82 -51.93 -0.41 -0.44 16 38 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 39 H 0.07 -0.01 8.14 -51.93 -0.42 -0.44 16 40 H 0.38 -1.05 9.08 45.56 0.41 -0.63 16 41 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 42 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 43 H 0.08 -0.14 8.14 -51.93 -0.42 -0.57 16 44 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 45 H 0.15 0.30 5.88 -52.49 -0.31 -0.01 16 LS Contribution 366.92 15.07 5.53 5.53 Total: 0.00 -8.49 366.92 -9.28 -17.77 By element: Atomic # 1 Polarization: -3.74 SS G_CDS: -6.05 Total: -9.79 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -1.84 Total: -0.27 kcal Atomic # 8 Polarization: -5.38 SS G_CDS: -1.79 Total: -7.17 kcal Atomic # 14 Polarization: -0.93 SS G_CDS: -5.13 Total: -6.07 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -8.49 -9.28 -17.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_15498042_16737258.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.872 kcal (2) G-P(sol) polarization free energy of solvation -8.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds