Wall clock time and date at job start Sat Mar 6 2021 06:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35909 * 116.99906 * 2 1 4 4 C 1.38816 * 119.98163 * 180.02562 * 3 2 1 5 5 C 1.50708 * 119.87733 * 359.97438 * 4 3 2 6 6 O 1.42900 * 109.47161 * 75.02082 * 5 4 3 7 7 Si 1.86302 * 109.47293 * 195.02304 * 5 4 3 8 8 C 1.38300 * 120.25222 * 180.02562 * 4 3 2 9 9 C 1.37954 * 120.20794 * 0.02562 * 8 4 3 10 10 C 1.39653 * 119.96103 * 359.97438 * 9 8 4 11 11 C 1.47741 * 120.12103 * 180.02562 * 10 9 8 12 12 O 1.21466 * 119.99774 * 180.02562 * 11 10 9 13 13 O 1.34709 * 120.00186 * 359.97438 * 11 10 9 14 14 C 1.45200 * 117.00168 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.46844 * 180.02562 * 14 13 11 16 16 H 1.08994 * 112.84852 * 43.80816 * 15 14 13 17 17 C 1.53784 * 113.60942 * 175.00263 * 15 14 13 18 18 C 1.53783 * 87.17332 * 89.07215 * 17 15 14 19 19 O 1.42894 * 113.61824 * 270.92175 * 18 17 15 20 20 C 1.42898 * 114.00379 * 294.85377 * 19 18 17 21 21 C 1.53004 * 113.61177 * 140.01968 * 18 17 15 22 22 F 1.39899 * 109.47404 * 54.78950 * 21 18 17 23 23 F 1.39908 * 109.46916 * 174.78983 * 21 18 17 24 24 F 1.39902 * 109.47329 * 294.78712 * 21 18 17 25 25 C 1.53781 * 113.61428 * 272.49760 * 15 14 13 26 26 C 1.38482 * 119.98560 * 0.29744 * 3 2 1 27 27 H 1.08993 * 109.46836 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46617 * 300.00220 * 1 2 3 29 29 H 1.09002 * 109.46778 * 60.00071 * 1 2 3 30 30 H 1.08997 * 109.46722 * 315.02441 * 5 4 3 31 31 H 0.96701 * 114.00036 * 60.00154 * 6 5 4 32 32 H 1.48497 * 109.99833 * 58.67832 * 7 5 4 33 33 H 1.48492 * 109.99693 * 179.97438 * 7 5 4 34 34 H 1.07998 * 119.89750 * 180.02562 * 8 4 3 35 35 H 1.07997 * 120.01565 * 180.02562 * 9 8 4 36 36 H 1.09008 * 109.46987 * 60.00413 * 14 13 11 37 37 H 1.09001 * 109.47115 * 300.00557 * 14 13 11 38 38 H 1.09004 * 113.61328 * 203.66298 * 17 15 14 39 39 H 1.09000 * 113.61725 * 334.48194 * 17 15 14 40 40 H 1.08997 * 109.47224 * 302.65330 * 20 19 18 41 41 H 1.09006 * 109.46911 * 62.64328 * 20 19 18 42 42 H 1.09001 * 109.47734 * 182.64364 * 20 19 18 43 43 H 1.09001 * 113.61484 * 25.43332 * 25 15 14 44 44 H 1.08993 * 113.61521 * 156.34183 * 25 15 14 45 45 H 1.08001 * 120.10390 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 3.4323 1.2832 -0.0005 5 6 4.2501 0.0173 -0.0005 6 8 4.2155 -0.5721 -1.3019 7 14 6.0122 0.4161 0.4540 8 6 4.0660 2.5125 0.0000 9 6 3.3243 3.6757 0.0016 10 6 1.9292 3.6133 0.0021 11 6 1.1314 4.8568 0.0033 12 8 -0.0819 4.7999 0.0042 13 8 1.7496 6.0537 0.0043 14 6 0.9027 7.2331 0.0048 15 6 1.7770 8.4887 0.0054 16 1 2.6136 8.4221 -0.6900 17 6 0.9769 9.7963 -0.1168 18 6 0.8854 9.7946 1.4183 19 8 -0.2500 9.0892 1.9233 20 6 -1.5035 9.6826 1.5790 21 6 1.0516 11.1811 2.0437 22 9 0.1234 12.0620 1.4784 23 9 0.8363 11.0990 3.4236 24 9 2.3472 11.6499 1.8009 25 6 2.1794 8.9586 1.4133 26 6 1.2915 2.3722 0.0062 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 3.8368 -0.6821 0.7261 31 1 4.5688 -0.0043 -2.0003 32 1 6.0586 1.0587 1.7919 33 1 6.8288 -0.8241 0.4581 34 1 5.1449 2.5620 -0.0008 35 1 3.8224 4.6340 0.0016 36 1 0.2731 7.2279 0.8947 37 1 0.2736 7.2290 -0.8853 38 1 1.5569 10.6272 -0.5188 39 1 0.0134 9.6742 -0.6118 40 1 -1.5302 10.7107 1.9401 41 1 -1.6237 9.6750 0.4956 42 1 -2.3127 9.1150 2.0383 43 1 2.1860 8.1598 2.1549 44 1 3.0880 9.5603 1.4296 45 1 0.2129 2.3173 0.0107 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_15498042_17321610.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 06:06:35 Heat of formation + Delta-G solvation = -276.106382 kcal Electronic energy + Delta-G solvation = -35379.536687 eV Core-core repulsion = 29916.388793 eV Total energy + Delta-G solvation = -5463.147894 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 377.126 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -51.25608 -48.78716 -48.72943 -42.04146 -41.47088 -40.82839 -38.70227 -37.91165 -37.42591 -36.89998 -33.18845 -31.44406 -30.73110 -28.54996 -28.26190 -27.93853 -26.93925 -26.74259 -23.99579 -23.47005 -23.24214 -21.99971 -20.69977 -19.89556 -19.60855 -19.53035 -19.24707 -18.65712 -17.89384 -17.60490 -17.42805 -17.15977 -17.10169 -16.94047 -16.49837 -16.42832 -15.89911 -15.70280 -15.66552 -15.61219 -15.42911 -15.24049 -15.14943 -15.01419 -14.89804 -14.85744 -14.77014 -14.29758 -14.22460 -13.93020 -13.70740 -13.56216 -13.29256 -13.15643 -12.93137 -12.75616 -12.51695 -12.38741 -12.28276 -12.15799 -12.03096 -11.96174 -11.71109 -11.70359 -11.55992 -10.80999 -10.41300 -10.23593 -9.40843 -4.97813 -0.59417 0.22529 1.30544 1.32131 1.37680 1.53418 1.70794 2.03054 2.08243 2.21401 2.53538 2.56439 2.63027 2.88615 3.19157 3.30394 3.41224 3.49239 3.60461 3.62945 3.73376 3.81611 3.92318 4.06723 4.21005 4.21527 4.23636 4.24731 4.27497 4.30733 4.36552 4.45877 4.51732 4.53026 4.59517 4.62251 4.68985 4.70137 4.77283 4.84074 4.92543 5.06203 5.09352 5.15445 5.28178 5.50765 5.70147 6.19823 6.54862 6.82831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.322 6.322 3 C 0.124 3.876 4 C -0.124 4.124 5 C -0.076 4.076 6 O -0.552 6.552 7 Si 0.796 3.204 8 C -0.080 4.080 9 C -0.082 4.082 10 C -0.097 4.097 11 C 0.513 3.487 12 O -0.535 6.535 13 O -0.339 6.339 14 C 0.075 3.925 15 C -0.090 4.090 16 H 0.130 0.870 17 C -0.135 4.135 18 C 0.029 3.971 19 O -0.349 6.349 20 C 0.005 3.995 21 C 0.433 3.567 22 F -0.185 7.185 23 F -0.189 7.189 24 F -0.174 7.174 25 C -0.111 4.111 26 C -0.158 4.158 27 H 0.118 0.882 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.395 0.605 32 H -0.279 1.279 33 H -0.301 1.301 34 H 0.180 0.820 35 H 0.173 0.827 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.130 0.870 39 H 0.101 0.899 40 H 0.048 0.952 41 H 0.069 0.931 42 H 0.107 0.893 43 H 0.090 0.910 44 H 0.132 0.868 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.635 2.611 -4.235 6.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.235 6.235 3 C 0.079 3.921 4 C -0.125 4.125 5 C -0.184 4.184 6 O -0.360 6.360 7 Si 0.700 3.300 8 C -0.097 4.097 9 C -0.100 4.100 10 C -0.098 4.098 11 C 0.359 3.641 12 O -0.426 6.426 13 O -0.255 6.255 14 C 0.002 3.998 15 C -0.108 4.108 16 H 0.148 0.852 17 C -0.172 4.172 18 C -0.014 4.014 19 O -0.267 6.267 20 C -0.090 4.090 21 C 0.379 3.621 22 F -0.167 7.167 23 F -0.171 7.171 24 F -0.155 7.155 25 C -0.148 4.148 26 C -0.177 4.177 27 H 0.136 0.864 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.113 0.887 31 H 0.244 0.756 32 H -0.206 1.206 33 H -0.230 1.230 34 H 0.196 0.804 35 H 0.190 0.810 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.148 0.852 39 H 0.119 0.881 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.125 0.875 43 H 0.109 0.891 44 H 0.150 0.850 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.710 1.692 -3.218 5.194 hybrid contribution -1.891 0.395 0.594 2.022 sum 1.819 2.087 -2.623 3.814 Atomic orbital electron populations 1.23332 0.76780 1.05577 1.02021 1.86159 1.22907 1.26161 1.88281 1.18825 0.92213 0.84222 0.96884 1.20288 0.91129 0.97356 1.03734 1.25312 1.10449 0.93507 0.89142 1.86529 1.87334 1.45475 1.16689 0.93911 0.72191 0.81109 0.82795 1.21177 1.01333 0.89553 0.97662 1.21653 0.91019 1.00884 0.96411 1.18933 0.94444 0.89142 1.07292 1.21315 0.86126 0.84657 0.72033 1.90840 1.16366 1.88309 1.47090 1.86463 1.41202 1.14314 1.83541 1.23142 0.92306 0.80780 1.03585 1.22039 0.99617 0.90752 0.98355 0.85212 1.23657 1.03672 0.98996 0.90896 1.24347 0.92832 0.87304 0.96895 1.88075 1.13621 1.49070 1.75931 1.23256 0.84530 0.99171 1.02066 1.21499 0.73951 0.89916 0.76735 1.93176 1.66153 1.72560 1.84769 1.93189 1.94523 1.96596 1.32755 1.93174 1.38178 1.90131 1.94019 1.23417 0.93539 0.99401 0.98407 1.21361 1.01119 0.90926 1.04261 0.86384 0.92077 0.91910 0.88728 0.75561 1.20556 1.22960 0.80370 0.80979 0.90417 0.90364 0.85219 0.88055 0.93301 0.91253 0.87502 0.89108 0.84973 0.84344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.00 9.81 113.37 1.11 1.11 16 2 O -0.32 -1.92 9.81 -92.53 -0.91 -2.83 16 3 C 0.12 0.55 6.65 22.47 0.15 0.70 16 4 C -0.12 -0.04 5.28 -19.71 -0.10 -0.15 16 5 C -0.08 -0.03 2.37 71.24 0.17 0.14 16 6 O -0.55 -0.79 12.88 -148.98 -1.92 -2.71 16 7 Si 0.80 -3.29 29.90 68.60 2.05 -1.23 16 8 C -0.08 0.41 8.64 22.22 0.19 0.60 16 9 C -0.08 0.30 9.61 22.54 0.22 0.52 16 10 C -0.10 -0.24 5.87 -20.11 -0.12 -0.35 16 11 C 0.51 2.62 7.90 70.33 0.56 3.18 16 12 O -0.53 -6.01 16.13 19.94 0.32 -5.69 16 13 O -0.34 -0.20 9.47 -56.19 -0.53 -0.74 16 14 C 0.08 -0.10 5.06 71.98 0.36 0.27 16 15 C -0.09 0.59 4.21 -10.26 -0.04 0.55 16 16 H 0.13 -1.33 8.14 -2.39 -0.02 -1.35 16 17 C -0.14 0.93 6.51 31.12 0.20 1.13 16 18 C 0.03 -0.05 0.85 -10.17 -0.01 -0.06 16 19 O -0.35 -0.48 8.36 -148.98 -1.25 -1.73 16 20 C 0.01 -0.01 10.44 113.37 1.18 1.17 16 21 C 0.43 0.68 2.52 71.98 0.18 0.86 16 22 F -0.19 -0.43 15.24 44.97 0.69 0.26 16 23 F -0.19 -1.15 17.10 44.97 0.77 -0.38 16 24 F -0.17 -0.13 15.83 44.97 0.71 0.58 16 25 C -0.11 0.54 6.90 31.21 0.22 0.75 16 26 C -0.16 -0.67 8.58 22.64 0.19 -0.48 16 27 H 0.12 -0.38 8.14 -2.39 -0.02 -0.40 16 28 H 0.06 -0.06 7.65 -2.39 -0.02 -0.07 16 29 H 0.06 -0.06 7.67 -2.39 -0.02 -0.08 16 30 H 0.10 0.40 7.82 -2.39 -0.02 0.38 16 31 H 0.39 -3.14 8.70 -74.06 -0.64 -3.79 16 32 H -0.28 -0.02 7.11 99.48 0.71 0.68 16 33 H -0.30 -1.23 7.11 99.48 0.71 -0.53 16 34 H 0.18 -2.25 5.10 -2.91 -0.01 -2.26 16 35 H 0.17 -1.54 7.61 -2.91 -0.02 -1.57 16 36 H 0.08 0.18 6.12 -2.38 -0.01 0.16 16 37 H 0.08 -0.12 8.14 -2.39 -0.02 -0.14 16 38 H 0.13 -1.26 8.06 -2.39 -0.02 -1.28 16 39 H 0.10 -0.80 6.70 -2.39 -0.02 -0.81 16 40 H 0.05 -0.04 6.25 -2.39 -0.01 -0.05 16 41 H 0.07 -0.36 6.76 -2.38 -0.02 -0.37 16 42 H 0.11 -0.36 8.14 -2.39 -0.02 -0.38 16 43 H 0.09 -0.26 8.10 -2.39 -0.02 -0.28 16 44 H 0.13 -1.02 7.02 -2.39 -0.02 -1.04 16 45 H 0.14 0.66 5.88 -2.91 -0.02 0.64 16 Total: 0.00 -21.94 382.13 4.86 -17.07 By element: Atomic # 1 Polarization: -13.01 SS G_CDS: 0.47 Total: -12.54 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: 4.46 Total: 9.94 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: -4.28 Total: -13.69 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 2.17 Total: 0.46 kcal Atomic # 14 Polarization: -3.29 SS G_CDS: 2.05 Total: -1.23 kcal Total: -21.94 4.86 -17.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_15498042_17321610.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -259.034 kcal (2) G-P(sol) polarization free energy of solvation -21.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -280.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -276.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds