Wall clock time and date at job start Sat Mar 6 2021 06:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35908 * 116.99727 * 2 1 4 4 C 1.38440 * 119.98487 * 0.02562 * 3 2 1 5 5 C 1.39582 * 119.78958 * 179.97438 * 4 3 2 6 6 C 1.47744 * 120.12169 * 179.97438 * 5 4 3 7 7 O 1.21463 * 119.99957 * 0.02562 * 6 5 4 8 8 O 1.34709 * 119.99562 * 180.02562 * 6 5 4 9 9 C 1.45205 * 116.99677 * 180.02562 * 8 6 5 10 10 C 1.50699 * 109.47031 * 180.02562 * 9 8 6 11 11 C 1.38237 * 119.99661 * 269.72236 * 10 9 8 12 12 C 1.38232 * 119.99796 * 179.76444 * 11 10 9 13 13 C 1.38238 * 120.00213 * 0.51229 * 12 11 10 14 14 Si 1.86796 * 120.00077 * 179.72271 * 13 12 11 15 15 C 1.86297 * 109.47186 * 270.01662 * 14 13 12 16 16 C 1.86303 * 109.47375 * 30.01875 * 14 13 12 17 17 C 1.86305 * 109.47072 * 150.02088 * 14 13 12 18 18 C 1.38239 * 119.99602 * 359.74143 * 13 12 11 19 19 C 1.38231 * 120.00326 * 89.99624 * 10 9 8 20 20 C 1.39614 * 119.75219 * 0.02562 * 5 4 3 21 21 C 1.37995 * 119.96036 * 359.71946 * 20 5 4 22 22 C 1.38252 * 120.21293 * 0.55573 * 21 20 5 23 23 C 1.50697 * 119.87655 * 179.72423 * 22 21 20 24 24 O 1.42906 * 109.46831 * 254.72496 * 23 22 21 25 25 Si 1.86300 * 109.47007 * 14.71885 * 23 22 21 26 26 H 1.48503 * 109.46942 * 60.00611 * 25 23 22 27 27 H 1.48503 * 109.47276 * 180.02562 * 25 23 22 28 28 H 1.48494 * 109.47372 * 300.00074 * 25 23 22 29 29 H 1.09000 * 109.47489 * 60.00206 * 1 2 3 30 30 H 1.09007 * 109.47154 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47633 * 299.99595 * 1 2 3 32 32 H 1.07995 * 120.10452 * 359.96148 * 4 3 2 33 33 H 1.09005 * 109.46376 * 299.99501 * 9 8 6 34 34 H 1.09000 * 109.47367 * 59.99465 * 9 8 6 35 35 H 1.08002 * 119.99860 * 0.02562 * 11 10 9 36 36 H 1.08006 * 119.99967 * 180.22693 * 12 11 10 37 37 H 1.09006 * 109.46862 * 59.99987 * 15 14 13 38 38 H 1.09001 * 109.47482 * 180.02562 * 15 14 13 39 39 H 1.09001 * 109.47375 * 300.00402 * 15 14 13 40 40 H 1.09005 * 109.46747 * 60.00130 * 16 14 13 41 41 H 1.09000 * 109.46807 * 179.97438 * 16 14 13 42 42 H 1.08997 * 109.46813 * 300.00383 * 16 14 13 43 43 H 1.08997 * 109.46951 * 59.99368 * 17 14 13 44 44 H 1.08994 * 109.47038 * 180.02562 * 17 14 13 45 45 H 1.09000 * 109.46858 * 299.99782 * 17 14 13 46 46 H 1.07996 * 119.99513 * 179.97438 * 18 13 12 47 47 H 1.08003 * 120.00049 * 0.02562 * 19 10 9 48 48 H 1.08005 * 120.01829 * 179.97438 * 20 5 4 49 49 H 1.08001 * 119.89337 * 180.26856 * 21 20 5 50 50 H 1.09000 * 109.47374 * 134.72069 * 23 22 21 51 51 H 0.96693 * 114.00047 * 60.00191 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2916 2.3718 0.0005 5 6 1.9294 3.6134 0.0011 6 6 1.1316 4.8568 0.0011 7 8 -0.0817 4.7999 0.0011 8 8 1.7498 6.0537 0.0011 9 6 0.9028 7.2331 0.0017 10 6 1.7638 8.4699 0.0009 11 6 2.1548 9.0405 1.1978 12 6 2.9487 10.1721 1.1972 13 6 3.3428 10.7394 -0.0003 14 14 4.4091 12.2731 -0.0010 15 6 3.3214 13.7856 -0.0004 16 6 5.4857 12.2817 1.5194 17 6 5.4836 12.2816 -1.5230 18 6 2.9473 10.1718 -1.1971 19 6 2.1579 9.0371 -1.1965 20 6 3.3242 3.6757 0.0005 21 6 4.0660 2.5121 0.0053 22 6 3.4327 1.2832 -0.0009 23 6 4.2503 0.0174 -0.0019 24 8 4.2154 -0.5712 -1.3037 25 14 6.0126 0.4160 0.4521 26 1 6.0490 1.0276 1.8049 27 1 6.8185 -0.8313 0.4506 28 1 6.5752 1.3695 -0.5375 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2130 2.3169 0.0003 33 1 0.2732 7.2286 -0.8882 34 1 0.2738 7.2283 0.8918 35 1 1.8436 8.5996 2.1333 36 1 3.2572 10.6158 2.1323 37 1 2.6927 13.7806 0.8901 38 1 3.9436 14.6806 -0.0013 39 1 2.6915 13.7806 -0.8899 40 1 6.1221 11.3968 1.5189 41 1 6.1082 13.1765 1.5186 42 1 4.8570 12.2767 2.4097 43 1 4.8536 12.2765 -2.4124 44 1 6.1061 13.1763 -1.5232 45 1 6.1199 11.3967 -1.5233 46 1 3.2549 10.6152 -2.1326 47 1 1.8484 8.5941 -2.1316 48 1 3.8222 4.6341 0.0005 49 1 5.1449 2.5616 0.0093 50 1 3.8373 -0.6825 0.7245 51 1 4.5684 -0.0029 -2.0018 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_15498042_9435856.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 06:41:31 Heat of formation + Delta-G solvation = -136.477934 kcal Electronic energy + Delta-G solvation = -30594.151814 eV Core-core repulsion = 26354.755258 eV Total energy + Delta-G solvation = -4239.396555 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 374.155 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.03764 -41.17655 -39.99568 -38.72296 -37.80400 -37.42502 -33.45694 -32.84803 -31.90134 -31.43698 -29.44828 -28.55984 -28.27871 -28.26146 -28.11213 -26.86612 -23.97735 -23.53299 -23.50257 -22.22688 -21.98935 -19.85572 -18.82232 -18.18170 -17.68559 -17.65690 -17.32680 -17.07802 -16.93425 -16.53836 -15.99964 -15.96438 -15.87044 -15.43792 -15.17441 -14.68408 -14.62257 -14.42046 -14.25347 -14.16096 -14.04074 -13.84894 -13.79075 -13.71583 -13.53769 -13.41176 -13.14982 -13.09824 -13.00258 -12.95282 -12.70942 -12.57384 -12.28444 -12.22354 -12.12933 -12.08151 -11.77171 -11.76565 -11.64290 -10.91786 -10.78833 -10.74394 -10.40131 -10.30604 -9.82269 -9.71671 -9.44746 -0.66311 0.07326 0.15534 0.50658 1.16094 1.23284 1.46585 1.47492 1.57355 1.84342 1.94853 2.03916 2.12564 2.20382 2.46495 2.67355 2.91234 3.31508 3.52374 3.56040 3.67681 3.74195 3.75052 3.88956 3.97833 4.08946 4.19403 4.21735 4.26301 4.28513 4.29985 4.44440 4.52386 4.64245 4.69300 4.71688 4.85565 4.85852 4.88799 4.89986 4.91078 4.91355 4.91826 4.96810 5.01922 5.07843 5.12547 5.14581 5.38776 5.41813 5.55040 5.57761 5.60612 5.69102 5.72330 6.09882 6.18765 6.45423 6.73630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.315 6.315 3 C 0.134 3.866 4 C -0.154 4.154 5 C -0.097 4.097 6 C 0.512 3.488 7 O -0.531 6.531 8 O -0.343 6.343 9 C 0.109 3.891 10 C -0.105 4.105 11 C -0.119 4.119 12 C -0.101 4.101 13 C -0.370 4.370 14 Si 1.129 2.871 15 C -0.464 4.464 16 C -0.463 4.463 17 C -0.462 4.462 18 C -0.101 4.101 19 C -0.119 4.119 20 C -0.086 4.086 21 C -0.098 4.098 22 C -0.119 4.119 23 C -0.081 4.081 24 O -0.548 6.548 25 Si 0.987 3.013 26 H -0.252 1.252 27 H -0.274 1.274 28 H -0.233 1.233 29 H 0.060 0.940 30 H 0.121 0.879 31 H 0.063 0.937 32 H 0.144 0.856 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.128 0.872 36 H 0.141 0.859 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.142 0.858 47 H 0.128 0.872 48 H 0.159 0.841 49 H 0.163 0.837 50 H 0.114 0.886 51 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.703 3.388 0.074 5.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.228 6.228 3 C 0.088 3.912 4 C -0.172 4.172 5 C -0.098 4.098 6 C 0.358 3.642 7 O -0.422 6.422 8 O -0.259 6.259 9 C 0.036 3.964 10 C -0.105 4.105 11 C -0.137 4.137 12 C -0.119 4.119 13 C -0.409 4.409 14 Si 1.316 2.684 15 C -0.571 4.571 16 C -0.570 4.570 17 C -0.570 4.570 18 C -0.119 4.119 19 C -0.137 4.137 20 C -0.104 4.104 21 C -0.116 4.116 22 C -0.121 4.121 23 C -0.190 4.190 24 O -0.355 6.355 25 Si 0.809 3.191 26 H -0.176 1.176 27 H -0.199 1.199 28 H -0.156 1.156 29 H 0.079 0.921 30 H 0.139 0.861 31 H 0.081 0.919 32 H 0.162 0.838 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.146 0.854 36 H 0.159 0.841 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.159 0.841 47 H 0.146 0.854 48 H 0.177 0.823 49 H 0.180 0.820 50 H 0.132 0.868 51 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 3.930 2.860 0.619 4.900 hybrid contribution -1.414 0.189 -0.361 1.471 sum 2.517 3.049 0.258 3.962 Atomic orbital electron populations 1.23369 0.76664 1.05793 1.02047 1.86169 1.22947 1.25639 1.88066 1.18725 0.91927 0.84316 0.96278 1.21394 1.01318 0.90645 1.03889 1.18908 0.94073 0.89374 1.07430 1.21367 0.86216 0.84550 0.72044 1.90832 1.16065 1.88258 1.47068 1.86606 1.41453 1.14298 1.83570 1.21977 0.91146 0.79535 1.03770 1.19518 1.00905 0.95353 0.94701 1.21375 0.98017 0.96946 0.97379 1.21398 0.96186 0.94962 0.99369 1.28090 1.06238 1.12808 0.93802 0.77136 0.63777 0.61285 0.66159 1.26309 1.10446 1.15918 1.04389 1.26280 1.10248 1.04734 1.15710 1.26278 1.10223 1.04736 1.15726 1.21397 0.96213 0.94922 0.99373 1.21372 0.98026 0.96930 0.97372 1.21516 0.91456 1.00385 0.97040 1.21223 1.01484 0.90276 0.98586 1.20235 0.91438 0.97100 1.03293 1.25128 1.10167 0.94241 0.89445 1.86546 1.87155 1.45215 1.16622 0.85199 0.72996 0.79742 0.81200 1.17608 1.19934 1.15623 0.92091 0.86075 0.91858 0.83812 0.89971 0.89963 0.85439 0.84079 0.91433 0.90686 0.91431 0.91211 0.90679 0.90919 0.90910 0.90681 0.91208 0.84068 0.85432 0.82332 0.82015 0.86812 0.76310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 9.81 113.37 1.11 1.10 16 2 O -0.32 -1.62 9.81 -92.52 -0.91 -2.53 16 3 C 0.13 0.63 6.65 22.47 0.15 0.78 16 4 C -0.15 -0.80 8.58 22.64 0.19 -0.60 16 5 C -0.10 -0.49 5.87 -20.11 -0.12 -0.61 16 6 C 0.51 4.07 7.90 70.34 0.56 4.63 16 7 O -0.53 -6.85 16.14 19.96 0.32 -6.53 16 8 O -0.34 -1.98 9.45 -56.19 -0.53 -2.51 16 9 C 0.11 0.43 5.60 71.24 0.40 0.83 16 10 C -0.10 -0.34 5.52 -19.87 -0.11 -0.45 16 11 C -0.12 -0.24 9.70 22.27 0.22 -0.02 16 12 C -0.10 0.03 9.29 22.27 0.21 0.24 16 13 C -0.37 0.61 4.59 22.27 0.10 0.71 16 14 Si 1.13 -7.57 12.32 68.60 0.85 -6.72 16 15 C -0.46 1.98 8.65 113.37 0.98 2.96 16 16 C -0.46 2.43 8.53 113.37 0.97 3.40 16 17 C -0.46 2.45 8.53 113.37 0.97 3.41 16 18 C -0.10 0.04 9.29 22.27 0.21 0.24 16 19 C -0.12 -0.23 9.70 22.27 0.22 -0.02 16 20 C -0.09 -0.06 9.61 22.54 0.22 0.16 16 21 C -0.10 0.11 8.64 22.22 0.19 0.30 16 22 C -0.12 -0.21 5.28 -19.71 -0.10 -0.31 16 23 C -0.08 -0.02 2.37 71.23 0.17 0.15 16 24 O -0.55 -1.04 12.88 -148.98 -1.92 -2.96 16 25 Si 0.99 -2.73 25.47 68.60 1.75 -0.98 16 26 H -0.25 0.47 7.11 99.48 0.71 1.18 16 27 H -0.27 -0.34 7.11 99.48 0.71 0.37 16 28 H -0.23 1.26 6.73 99.48 0.67 1.93 16 29 H 0.06 -0.08 7.66 -2.39 -0.02 -0.10 16 30 H 0.12 -0.52 8.14 -2.38 -0.02 -0.54 16 31 H 0.06 -0.12 7.66 -2.39 -0.02 -0.14 16 32 H 0.14 0.70 5.88 -2.91 -0.02 0.69 16 33 H 0.08 0.28 8.08 -2.38 -0.02 0.26 16 34 H 0.08 0.28 8.08 -2.39 -0.02 0.27 16 35 H 0.13 -0.04 8.06 -2.91 -0.02 -0.06 16 36 H 0.14 -0.66 7.43 -2.91 -0.02 -0.68 16 37 H 0.07 -0.24 7.96 -2.38 -0.02 -0.26 16 38 H 0.07 -0.36 7.96 -2.39 -0.02 -0.37 16 39 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 40 H 0.07 -0.32 7.96 -2.38 -0.02 -0.34 16 41 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 42 H 0.07 -0.41 7.69 -2.39 -0.02 -0.42 16 43 H 0.07 -0.41 7.69 -2.39 -0.02 -0.43 16 44 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 45 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 46 H 0.14 -0.66 7.43 -2.91 -0.02 -0.69 16 47 H 0.13 -0.05 8.06 -2.91 -0.02 -0.07 16 48 H 0.16 -0.39 7.61 -2.91 -0.02 -0.41 16 49 H 0.16 -0.99 4.86 -2.91 -0.01 -1.00 16 50 H 0.11 0.12 7.82 -2.39 -0.02 0.10 16 51 H 0.39 -2.17 8.70 -74.06 -0.64 -2.82 16 Total: 0.00 -17.38 427.72 7.09 -10.29 By element: Atomic # 1 Polarization: -5.99 SS G_CDS: 1.01 Total: -4.98 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: 6.52 Total: 16.91 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: -3.04 Total: -14.52 kcal Atomic # 14 Polarization: -10.30 SS G_CDS: 2.59 Total: -7.70 kcal Total: -17.38 7.09 -10.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_15498042_9435856.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.187 kcal (2) G-P(sol) polarization free energy of solvation -17.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds