Wall clock time and date at job start Sat Mar 6 2021 08:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47165 * 2 1 4 4 C 1.53002 * 109.47066 * 119.99605 * 2 1 3 5 5 H 1.09002 * 109.47097 * 300.00046 * 4 2 1 6 6 C 1.53005 * 109.47197 * 59.99847 * 4 2 1 7 7 C 1.52997 * 109.47452 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.46817 * 300.00239 * 7 6 4 9 9 H 1.09004 * 109.46733 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.47303 * 299.99842 * 8 7 6 11 11 O 1.20821 * 120.00138 * 119.99814 * 10 8 7 12 12 O 1.34235 * 119.99896 * 300.00339 * 10 8 7 13 13 C 1.45198 * 116.99985 * 180.02562 * 12 10 8 14 14 C 1.50697 * 109.46988 * 180.02562 * 13 12 10 15 15 C 1.38945 * 120.04074 * 179.72838 * 14 13 12 16 16 O 1.34880 * 120.98701 * 359.97438 * 15 14 13 17 17 C 1.33713 * 122.40950 * 180.02562 * 16 15 14 18 18 C 1.34537 * 122.85631 * 0.02562 * 17 16 15 19 19 C 1.50699 * 120.20084 * 179.97438 * 18 17 16 20 20 O 1.42899 * 109.47630 * 249.99871 * 19 18 17 21 21 Si 1.86305 * 109.47258 * 10.00298 * 19 18 17 22 22 C 1.42004 * 119.59431 * 359.36172 * 18 17 16 23 23 O 1.21923 * 121.40871 * 180.02562 * 22 18 17 24 24 C 1.40449 * 119.33395 * 179.70383 * 15 14 13 25 25 C 1.39347 * 120.24466 * 0.58636 * 24 15 14 26 26 C 1.37891 * 119.52226 * 359.70053 * 25 24 15 27 27 Br 1.89097 * 119.86057 * 180.02562 * 26 25 24 28 28 C 1.37866 * 120.04251 * 359.97438 * 14 13 12 29 29 C 1.53000 * 109.47233 * 60.00194 * 8 7 6 30 30 C 1.52997 * 109.47060 * 299.99657 * 29 8 7 31 31 H 1.09002 * 109.47726 * 300.00407 * 1 2 3 32 32 H 1.09000 * 109.46925 * 60.00283 * 1 2 3 33 33 H 1.08996 * 109.47340 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47726 * 239.99593 * 2 1 3 35 35 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 36 36 H 1.09004 * 109.46724 * 299.99231 * 3 2 1 37 37 H 1.08992 * 109.47399 * 59.99717 * 3 2 1 38 38 H 1.09002 * 109.46935 * 60.00099 * 6 4 2 39 39 H 1.09001 * 109.46812 * 300.00441 * 6 4 2 40 40 H 1.08993 * 109.47194 * 179.97438 * 7 6 4 41 41 H 1.09002 * 109.46695 * 59.99734 * 7 6 4 42 42 H 1.09001 * 109.46536 * 299.99359 * 13 12 10 43 43 H 1.08992 * 109.47243 * 59.99710 * 13 12 10 44 44 H 1.07997 * 118.57247 * 180.02562 * 17 16 15 45 45 H 1.08999 * 109.47081 * 129.99794 * 19 18 17 46 46 H 0.96701 * 113.99520 * 60.00031 * 20 19 18 47 47 H 1.48504 * 109.99932 * 58.67880 * 21 19 18 48 48 H 1.48500 * 110.00306 * 179.97438 * 21 19 18 49 49 H 1.07995 * 120.24131 * 179.68227 * 25 24 15 50 50 H 1.08002 * 119.64934 * 0.02562 * 28 14 13 51 51 H 1.09002 * 109.47398 * 59.99826 * 29 8 7 52 52 H 1.09001 * 109.47194 * 180.02562 * 29 8 7 53 53 H 1.08996 * 109.47853 * 180.02562 * 30 29 8 54 54 H 1.09002 * 109.47153 * 300.00319 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -0.2073 2.1393 6 6 1.5299 -2.1637 1.2494 7 6 2.0393 -2.8847 2.4990 8 6 3.5693 -2.8847 2.4996 9 1 3.9322 -3.3980 3.3901 10 6 4.0722 -3.5953 1.2696 11 8 4.7671 -3.0083 0.4744 12 8 3.7480 -4.8805 1.0573 13 6 4.2681 -5.5012 -0.1479 14 6 3.8030 -6.9329 -0.2165 15 6 4.1720 -7.7334 -1.2906 16 8 4.9457 -7.2496 -2.2838 17 6 5.3171 -7.9942 -3.3304 18 6 4.9509 -9.2803 -3.4779 19 6 5.4037 -10.0641 -4.6828 20 8 4.2851 -10.3150 -5.5359 21 14 6.6875 -9.0859 -5.6134 22 6 4.1458 -9.8985 -2.4849 23 8 3.7952 -11.0619 -2.5848 24 6 3.7353 -9.0675 -1.3363 25 6 2.9301 -9.5778 -0.3199 26 6 2.5701 -8.7652 0.7343 27 35 1.4783 -9.4479 2.1191 28 6 3.0068 -7.4487 0.7838 29 6 4.0793 -1.4422 2.4996 30 6 3.5699 -0.7212 1.2501 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9562 -0.8901 37 1 1.6766 1.9563 0.8899 38 1 1.8932 -2.6776 0.3595 39 1 0.4399 -2.1636 1.2494 40 1 1.6756 -3.9122 2.4993 41 1 1.6756 -2.3706 3.3887 42 1 3.9050 -4.9594 -1.0213 43 1 5.3575 -5.4731 -0.1300 44 1 5.9382 -7.5436 -4.0905 45 1 5.8335 -11.0120 -4.3590 46 1 3.8523 -9.5143 -5.8626 47 1 7.8422 -8.7911 -4.7274 48 1 7.1427 -9.8483 -6.8037 49 1 2.5902 -10.6021 -0.3578 50 1 2.7190 -6.8213 1.6145 51 1 3.7156 -0.9282 3.3894 52 1 5.1693 -1.4422 2.4996 53 1 3.9335 0.3063 1.2497 54 1 3.9336 -1.2352 0.3603 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_15613246_484008.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 08:14:53 Heat of formation + Delta-G solvation = -139.039530 kcal Electronic energy + Delta-G solvation = -39120.566600 eV Core-core repulsion = 34036.152635 eV Total energy + Delta-G solvation = -5084.413965 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 465.096 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -43.35262 -42.06505 -40.18550 -40.11010 -39.47185 -37.90880 -37.58308 -35.89680 -34.62763 -33.68488 -33.15023 -31.80160 -30.88242 -30.69641 -28.30138 -27.98155 -27.48204 -25.98840 -24.99390 -24.43262 -23.31593 -22.96775 -22.33579 -20.96260 -20.67417 -20.48881 -19.51392 -18.97939 -18.33298 -18.01363 -17.63893 -17.57159 -17.27709 -16.79693 -16.57732 -16.39457 -16.22246 -16.04796 -15.55679 -15.47373 -15.29311 -15.23105 -15.10264 -14.82415 -14.55994 -14.48317 -14.23368 -14.22068 -14.11947 -13.98899 -13.88601 -13.36460 -13.27610 -13.05857 -12.90945 -12.77490 -12.55882 -12.44156 -12.30780 -12.16192 -12.09771 -12.01643 -11.91636 -11.88461 -11.75538 -11.52760 -11.46636 -11.28798 -10.88758 -10.82810 -10.74419 -10.70663 -10.44635 -10.42046 -9.59231 -5.14585 -0.86005 -0.71079 0.03056 0.33182 0.96575 1.15380 1.20149 1.39347 1.46003 1.58203 1.96064 2.26666 2.67696 2.86050 3.19143 3.31319 3.45690 3.54930 3.65611 3.66437 3.72163 3.75397 3.85462 3.91486 3.97800 4.08250 4.10146 4.12877 4.14759 4.26660 4.27752 4.31700 4.37606 4.45496 4.54854 4.59761 4.63121 4.64262 4.65711 4.70327 4.73654 4.77719 4.83225 4.87883 5.02105 5.03680 5.04707 5.12022 5.14551 5.17267 5.24718 5.28373 5.31368 5.33305 5.44519 5.51401 5.58392 5.73634 5.74631 6.30516 6.73288 6.75589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.149 4.149 4 C -0.078 4.078 5 H 0.077 0.923 6 C -0.121 4.121 7 C -0.109 4.109 8 C -0.078 4.078 9 H 0.130 0.870 10 C 0.472 3.528 11 O -0.522 6.522 12 O -0.353 6.353 13 C 0.118 3.882 14 C -0.096 4.096 15 C 0.166 3.834 16 O -0.201 6.201 17 C 0.178 3.822 18 C -0.341 4.341 19 C -0.063 4.063 20 O -0.558 6.558 21 Si 0.802 3.198 22 C 0.423 3.577 23 O -0.497 6.497 24 C -0.227 4.227 25 C -0.010 4.010 26 C -0.120 4.120 27 Br -0.025 7.025 28 C -0.007 4.007 29 C -0.104 4.104 30 C -0.130 4.130 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.050 0.950 37 H 0.057 0.943 38 H 0.043 0.957 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.099 0.901 44 H 0.246 0.754 45 H 0.089 0.911 46 H 0.395 0.605 47 H -0.259 1.259 48 H -0.296 1.296 49 H 0.144 0.856 50 H 0.177 0.823 51 H 0.093 0.907 52 H 0.062 0.938 53 H 0.063 0.937 54 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.250 8.925 1.875 9.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.110 4.110 3 C -0.206 4.206 4 C -0.096 4.096 5 H 0.095 0.905 6 C -0.158 4.158 7 C -0.146 4.146 8 C -0.097 4.097 9 H 0.148 0.852 10 C 0.316 3.684 11 O -0.410 6.410 12 O -0.270 6.270 13 C 0.044 3.956 14 C -0.098 4.098 15 C 0.120 3.880 16 O -0.104 6.104 17 C 0.113 3.887 18 C -0.343 4.343 19 C -0.169 4.169 20 O -0.366 6.366 21 Si 0.703 3.297 22 C 0.310 3.690 23 O -0.381 6.381 24 C -0.229 4.229 25 C -0.030 4.030 26 C -0.200 4.200 27 Br 0.061 6.939 28 C -0.026 4.026 29 C -0.141 4.141 30 C -0.167 4.167 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.114 0.886 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.262 0.738 45 H 0.107 0.893 46 H 0.244 0.756 47 H -0.185 1.185 48 H -0.224 1.224 49 H 0.161 0.839 50 H 0.194 0.806 51 H 0.112 0.888 52 H 0.081 0.919 53 H 0.082 0.918 54 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.889 7.856 1.964 8.146 hybrid contribution 0.084 -1.256 -0.286 1.291 sum 0.973 6.600 1.678 6.879 Atomic orbital electron populations 1.21889 0.94953 1.01959 1.01761 1.21111 0.95870 0.96120 0.97912 1.21888 1.01089 0.95934 1.01726 1.21199 0.94951 0.95489 0.97996 0.90479 1.21712 1.01427 0.95235 0.97419 1.21593 0.90923 1.02522 0.99590 1.21299 0.98649 0.96125 0.93589 0.85200 1.24240 0.76678 0.79333 0.88104 1.90639 1.36633 1.66390 1.47321 1.86412 1.69933 1.27326 1.43352 1.21518 0.99879 0.87492 0.86691 1.18861 1.02191 0.95403 0.93318 1.18871 0.90903 0.90676 0.87574 1.83167 1.57357 1.42099 1.27755 1.24418 0.89698 0.89194 0.85410 1.21965 1.11119 0.97561 1.03692 1.25208 0.97493 1.03961 0.90285 1.86551 1.46919 1.37570 1.65524 0.94446 0.75096 0.83767 0.76362 1.18800 0.78666 0.87226 0.84330 1.90751 1.51417 1.18668 1.77231 1.20731 1.06634 0.94818 1.00742 1.21114 0.91784 1.00201 0.89914 1.21862 1.04363 0.96709 0.97072 1.96842 1.65163 1.86469 1.45401 1.21234 0.91167 0.92549 0.97652 1.21468 1.00695 0.92446 0.99493 1.21859 0.95208 1.00655 0.98989 0.92358 0.93163 0.92183 0.92642 0.92616 0.93092 0.92393 0.93821 0.90457 0.89765 0.88607 0.88198 0.88284 0.73840 0.89320 0.75550 1.18470 1.22364 0.83852 0.80597 0.88820 0.91914 0.91840 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.38 8.84 71.98 0.64 1.01 16 2 C -0.09 0.15 2.51 -10.80 -0.03 0.12 16 3 C -0.15 0.22 8.84 71.98 0.64 0.86 16 4 C -0.08 0.26 1.77 -10.79 -0.02 0.24 16 5 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 6 C -0.12 0.53 4.63 30.60 0.14 0.67 16 7 C -0.11 0.81 5.39 30.59 0.16 0.98 16 8 C -0.08 0.46 3.11 -11.54 -0.04 0.42 16 9 H 0.13 -1.26 8.14 -2.39 -0.02 -1.28 16 10 C 0.47 -0.63 5.74 71.23 0.41 -0.22 16 11 O -0.52 -2.12 13.41 21.98 0.29 -1.83 16 12 O -0.35 1.12 8.58 -51.47 -0.44 0.68 16 13 C 0.12 -0.46 5.38 71.23 0.38 -0.08 16 14 C -0.10 0.24 5.89 -19.78 -0.12 0.13 16 15 C 0.17 -0.13 6.74 22.98 0.15 0.02 16 16 O -0.20 1.04 9.21 -2.69 -0.02 1.02 16 17 C 0.18 -1.33 9.99 66.97 0.67 -0.66 16 18 C -0.34 -0.14 5.32 -19.78 -0.11 -0.25 16 19 C -0.06 -0.06 2.46 71.24 0.17 0.11 16 20 O -0.56 -2.00 12.88 -148.98 -1.92 -3.92 16 21 Si 0.80 -5.44 29.86 68.60 2.05 -3.39 16 22 C 0.42 3.48 6.98 25.67 0.18 3.66 16 23 O -0.50 -8.41 16.93 -5.07 -0.09 -8.50 16 24 C -0.23 -0.97 5.89 -20.01 -0.12 -1.09 16 25 C -0.01 -0.04 9.40 22.45 0.21 0.17 16 26 C -0.12 -0.14 6.22 22.32 0.14 0.00 16 27 Br -0.02 -0.03 33.69 -20.37 -0.69 -0.71 16 28 C -0.01 0.01 9.10 22.31 0.20 0.22 16 29 C -0.10 0.45 5.09 30.59 0.16 0.60 16 30 C -0.13 0.18 4.56 30.59 0.14 0.32 16 31 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16 32 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 33 H 0.06 -0.19 6.43 -2.39 -0.02 -0.20 16 34 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 35 H 0.05 -0.05 6.43 -2.39 -0.02 -0.06 16 36 H 0.05 -0.05 8.14 -2.39 -0.02 -0.07 16 37 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 38 H 0.04 -0.06 7.22 -2.39 -0.02 -0.07 16 39 H 0.08 -0.39 6.43 -2.39 -0.02 -0.41 16 40 H 0.08 -0.71 8.11 -2.39 -0.02 -0.73 16 41 H 0.10 -0.93 8.14 -2.39 -0.02 -0.95 16 42 H 0.10 -0.47 8.13 -2.39 -0.02 -0.49 16 43 H 0.10 -0.45 8.13 -2.39 -0.02 -0.47 16 44 H 0.25 -4.17 4.77 -2.91 -0.01 -4.18 16 45 H 0.09 0.57 7.96 -2.39 -0.02 0.55 16 46 H 0.39 -2.76 8.70 -74.06 -0.64 -3.40 16 47 H -0.26 1.25 7.11 99.48 0.71 1.95 16 48 H -0.30 -0.66 7.11 99.48 0.71 0.05 16 49 H 0.14 0.88 7.81 -2.91 -0.02 0.86 16 50 H 0.18 -0.92 6.96 -2.91 -0.02 -0.94 16 51 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 52 H 0.06 -0.14 8.10 -2.39 -0.02 -0.16 16 53 H 0.06 -0.06 6.43 -2.39 -0.02 -0.08 16 54 H 0.07 0.22 5.52 -2.39 -0.01 0.20 16 Total: 0.00 -24.27 443.03 3.51 -20.76 By element: Atomic # 1 Polarization: -11.69 SS G_CDS: 0.35 Total: -11.34 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: 3.98 Total: 7.23 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: -2.18 Total: -12.55 kcal Atomic # 14 Polarization: -5.44 SS G_CDS: 2.05 Total: -3.39 kcal Atomic # 35 Polarization: -0.03 SS G_CDS: -0.69 Total: -0.71 kcal Total: -24.27 3.51 -20.76 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_15613246_484008.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.279 kcal (2) G-P(sol) polarization free energy of solvation -24.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds