Wall clock time and date at job start Sat Mar 6 2021 08:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86293 * 109.46900 * 2 1 4 4 C 1.50697 * 109.47126 * 119.99979 * 2 1 3 5 5 C 1.34542 * 120.20377 * 249.98107 * 4 2 1 6 6 O 1.33712 * 122.85011 * 180.02562 * 5 4 2 7 7 C 1.34878 * 122.41570 * 359.95840 * 6 5 4 8 8 C 1.40421 * 119.67741 * 0.03773 * 7 6 5 9 9 C 1.39387 * 120.23949 * 179.97438 * 8 7 6 10 10 C 1.37846 * 119.52404 * 359.97438 * 9 8 7 11 11 Br 1.89102 * 119.86047 * 180.02562 * 10 9 8 12 12 C 1.38835 * 120.27754 * 359.79896 * 10 9 8 13 13 C 1.37831 * 120.70300 * 0.44228 * 12 10 9 14 14 C 1.50696 * 120.04175 * 179.80952 * 13 12 10 15 15 O 1.45198 * 109.46950 * 359.72175 * 14 13 12 16 16 C 1.34234 * 116.99661 * 180.02562 * 15 14 13 17 17 O 1.20829 * 120.00175 * 0.02562 * 16 15 14 18 18 C 1.50704 * 119.99769 * 180.02562 * 16 15 14 19 19 C 1.53008 * 109.44984 * 59.95474 * 18 16 15 20 20 C 1.53097 * 109.41564 * 180.60507 * 19 18 16 21 21 C 1.52168 * 109.56034 * 301.22507 * 20 19 18 22 22 C 1.53785 * 110.73215 * 181.77044 * 21 20 19 23 23 N 1.46930 * 105.33922 * 93.33228 * 22 21 20 24 24 C 1.34503 * 111.29764 * 16.38424 * 23 22 21 25 25 O 1.21285 * 124.94032 * 179.61348 * 24 23 22 26 26 C 1.51426 * 110.11626 * 359.63743 * 24 23 22 27 27 C 1.52169 * 111.32204 * 58.11674 * 21 20 19 28 28 C 1.53005 * 109.45189 * 180.02562 * 18 16 15 29 29 C 1.41999 * 120.20553 * 69.99703 * 4 2 1 30 30 O 1.21913 * 121.40966 * 359.96002 * 29 4 2 31 31 H 0.96698 * 114.00155 * 299.99792 * 1 2 3 32 32 H 1.08994 * 109.47277 * 239.99912 * 2 1 3 33 33 H 1.48504 * 109.99976 * 299.99964 * 3 2 1 34 34 H 1.48505 * 110.00352 * 61.31684 * 3 2 1 35 35 H 1.07998 * 118.57237 * 0.02562 * 5 4 2 36 36 H 1.08001 * 120.23780 * 180.02562 * 9 8 7 37 37 H 1.08002 * 119.65179 * 180.25430 * 12 10 9 38 38 H 1.09004 * 109.46939 * 239.72320 * 14 13 12 39 39 H 1.09001 * 109.47087 * 119.72590 * 14 13 12 40 40 H 1.09002 * 109.45270 * 300.00036 * 18 16 15 41 41 H 1.08997 * 109.48329 * 300.55918 * 19 18 16 42 42 H 1.08996 * 109.48192 * 60.61167 * 19 18 16 43 43 H 1.09000 * 109.45570 * 181.19501 * 20 19 18 44 44 H 1.08998 * 109.44079 * 61.24320 * 20 19 18 45 45 H 1.08999 * 110.27478 * 212.29672 * 22 21 20 46 46 H 1.09004 * 110.27459 * 334.36629 * 22 21 20 47 47 H 0.97006 * 124.34843 * 196.39390 * 23 22 21 48 48 H 1.09003 * 110.51964 * 225.66785 * 26 24 23 49 49 H 1.09004 * 110.51763 * 102.94068 * 26 24 23 50 50 H 1.09002 * 109.45607 * 181.84774 * 27 21 20 51 51 H 1.09005 * 109.43737 * 61.90472 * 27 21 20 52 52 H 1.09001 * 109.48373 * 299.39158 * 28 18 16 53 53 H 1.09003 * 109.48114 * 59.43575 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.5323 -0.0170 2.2144 6 8 2.9979 -0.5929 3.3277 7 6 2.8996 -1.9195 3.5509 8 6 2.2899 -2.7428 2.5906 9 6 2.1826 -4.1153 2.8089 10 6 2.6796 -4.6586 3.9742 11 35 2.5397 -6.5195 4.2799 12 6 3.2868 -3.8461 4.9222 13 6 3.3942 -2.4870 4.7192 14 6 4.0522 -1.6184 5.7600 15 8 4.4802 -2.4415 6.8770 16 6 5.0887 -1.8159 7.8969 17 8 5.2576 -0.6201 7.8579 18 6 5.5611 -2.6051 9.0908 19 6 6.5795 -3.6533 8.6380 20 6 7.0476 -4.4645 9.8491 21 6 7.6673 -3.5311 10.8788 22 6 8.1872 -4.3243 12.0894 23 7 9.6021 -4.5935 11.7991 24 6 10.0589 -3.7981 10.8154 25 8 11.1926 -3.8074 10.3845 26 6 8.9520 -2.8888 10.3245 27 6 6.6802 -2.4603 11.3199 28 6 6.2143 -1.6593 10.1007 29 6 1.7737 -2.1158 1.3583 30 8 1.2340 -2.7765 0.4874 31 1 -0.3933 0.4417 0.7650 32 1 1.7924 -0.5138 -0.8899 33 1 1.5614 2.4678 -1.2085 34 1 1.5878 2.4586 1.2242 35 1 2.6434 1.0512 2.1001 36 1 1.7140 -4.7485 2.0701 37 1 3.6764 -4.2831 5.8297 38 1 3.3414 -0.8704 6.1113 39 1 4.9177 -1.1202 5.3231 40 1 4.7105 -3.1028 9.5566 41 1 6.1160 -4.3205 7.9114 42 1 7.4349 -3.1556 8.1812 43 1 7.7890 -5.1974 9.5307 44 1 6.1952 -4.9794 10.2923 45 1 8.0947 -3.7299 12.9984 46 1 7.6380 -5.2603 12.1918 47 1 10.1379 -5.2595 12.2579 48 1 8.9293 -2.8684 9.2349 49 1 9.0788 -1.8825 10.7239 50 1 7.1644 -1.7908 12.0307 51 1 5.8202 -2.9330 11.7944 52 1 7.0710 -1.1691 9.6383 53 1 5.4907 -0.9071 10.4150 There are 79 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 79 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_15716102_484008.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 08:38:51 Heat of formation + Delta-G solvation = -164.182542 kcal Electronic energy + Delta-G solvation = -41886.919684 eV Core-core repulsion = 36316.392672 eV Total energy + Delta-G solvation = -5570.527012 eV No. of doubly occupied orbitals = 79 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 492.075 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -43.34071 -42.20553 -41.45490 -40.17143 -39.90786 -39.10867 -38.04593 -37.65533 -36.50446 -34.64783 -33.69990 -33.18947 -32.64663 -31.80714 -30.71840 -29.46246 -28.44654 -27.48668 -26.93044 -25.83816 -24.45388 -23.79160 -23.68093 -22.41865 -21.78129 -21.30911 -20.68144 -19.83991 -19.56792 -19.10438 -18.52974 -18.20452 -17.94942 -17.75669 -17.57964 -17.38043 -16.98749 -16.77154 -16.45669 -16.27808 -16.07901 -16.02685 -15.68456 -15.63606 -15.31914 -15.28369 -15.18012 -15.07532 -14.64965 -14.50339 -14.44921 -14.20559 -13.99054 -13.93991 -13.78173 -13.68520 -13.37989 -13.13774 -13.04705 -12.80046 -12.65205 -12.54154 -12.35590 -12.23554 -11.96915 -11.85331 -11.80564 -11.76685 -11.51644 -11.34595 -11.33609 -11.17790 -11.07785 -10.84111 -10.70591 -10.56637 -10.41103 -10.05016 -9.58010 -4.99602 -0.84218 -0.69548 0.04129 0.35072 0.97664 1.16142 1.17478 1.41094 1.44786 1.46764 1.57014 1.95700 2.28193 2.49024 2.68914 2.87357 3.19366 3.30228 3.32206 3.38827 3.41131 3.55181 3.63812 3.67411 3.75987 3.82742 3.87671 3.97667 3.99472 4.08236 4.11724 4.16267 4.29198 4.30320 4.32073 4.35011 4.41213 4.56991 4.61001 4.63549 4.66299 4.69811 4.73852 4.75095 4.79460 4.88096 4.94225 5.02663 5.04049 5.04858 5.21343 5.26496 5.28855 5.39092 5.46470 5.52130 5.75381 5.89875 6.03431 6.32433 6.47649 6.69180 7.25649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.072 4.072 3 Si 0.783 3.217 4 C -0.334 4.334 5 C 0.171 3.829 6 O -0.201 6.201 7 C 0.165 3.835 8 C -0.226 4.226 9 C -0.010 4.010 10 C -0.121 4.121 11 Br -0.025 7.025 12 C -0.006 4.006 13 C -0.097 4.097 14 C 0.117 3.883 15 O -0.351 6.351 16 C 0.469 3.531 17 O -0.531 6.531 18 C -0.072 4.072 19 C -0.112 4.112 20 C -0.101 4.101 21 C -0.063 4.063 22 C 0.106 3.894 23 N -0.726 5.726 24 C 0.506 3.494 25 O -0.598 6.598 26 C -0.148 4.148 27 C -0.095 4.095 28 C -0.106 4.106 29 C 0.424 3.576 30 O -0.496 6.496 31 H 0.386 0.614 32 H 0.104 0.896 33 H -0.300 1.300 34 H -0.238 1.238 35 H 0.242 0.758 36 H 0.144 0.856 37 H 0.179 0.821 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.139 0.861 41 H 0.089 0.911 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.100 0.900 45 H 0.091 0.909 46 H 0.105 0.895 47 H 0.413 0.587 48 H 0.100 0.900 49 H 0.112 0.888 50 H 0.081 0.919 51 H 0.098 0.902 52 H 0.061 0.939 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.977 2.226 8.967 9.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.178 4.178 3 Si 0.683 3.317 4 C -0.337 4.337 5 C 0.106 3.894 6 O -0.104 6.104 7 C 0.119 3.881 8 C -0.229 4.229 9 C -0.030 4.030 10 C -0.200 4.200 11 Br 0.061 6.939 12 C -0.025 4.025 13 C -0.098 4.098 14 C 0.043 3.957 15 O -0.268 6.268 16 C 0.314 3.686 17 O -0.420 6.420 18 C -0.090 4.090 19 C -0.150 4.150 20 C -0.138 4.138 21 C -0.064 4.064 22 C -0.017 4.017 23 N -0.380 5.380 24 C 0.294 3.706 25 O -0.480 6.480 26 C -0.187 4.187 27 C -0.133 4.133 28 C -0.143 4.143 29 C 0.310 3.690 30 O -0.379 6.379 31 H 0.235 0.765 32 H 0.122 0.878 33 H -0.227 1.227 34 H -0.164 1.164 35 H 0.257 0.743 36 H 0.161 0.839 37 H 0.196 0.804 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.156 0.844 41 H 0.108 0.892 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.119 0.881 45 H 0.110 0.890 46 H 0.124 0.876 47 H 0.252 0.748 48 H 0.118 0.882 49 H 0.130 0.870 50 H 0.100 0.900 51 H 0.116 0.884 52 H 0.080 0.920 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.801 2.230 7.969 8.314 hybrid contribution -0.956 -0.317 -0.411 1.088 sum -1.757 1.913 7.557 7.991 Atomic orbital electron populations 1.86660 1.18840 1.80496 1.49828 1.25225 0.83358 1.12828 0.96420 0.94452 0.89127 0.69179 0.78931 1.21878 1.13338 0.95976 1.02493 1.24510 0.85581 0.99002 0.80340 1.83168 1.68167 1.20540 1.38517 1.18895 0.95263 0.80587 0.93362 1.20728 1.08319 0.95369 0.98495 1.21115 0.93168 0.93298 0.95443 1.21868 1.07118 0.92916 0.98125 1.96845 1.97476 1.03360 1.96209 1.21248 0.92007 0.90815 0.98467 1.18862 1.03591 0.94052 0.93305 1.21537 1.00165 0.90755 0.83196 1.86406 1.69757 1.42314 1.28339 1.24390 0.73353 0.87203 0.83692 1.90710 1.53762 1.17629 1.79849 1.21269 1.01305 0.96580 0.89889 1.21599 0.97669 0.96793 0.98929 1.21442 1.01502 0.96697 0.94192 1.21034 0.93971 0.96174 0.95220 1.22405 0.79362 1.02020 0.97950 1.46420 1.14553 1.39265 1.37721 1.21611 0.88312 0.81403 0.79275 1.90746 1.23336 1.71579 1.62316 1.22540 0.92910 0.99716 1.03581 1.21424 0.99073 0.96046 0.96742 1.21484 1.00769 0.97126 0.94941 1.18773 0.76420 0.89235 0.84540 1.90750 1.37251 1.67658 1.42231 0.76503 0.87793 1.22743 1.16351 0.74294 0.83868 0.80379 0.88197 0.88168 0.84373 0.89229 0.92160 0.91912 0.88109 0.89039 0.87638 0.74825 0.88150 0.86993 0.90010 0.88367 0.92049 0.90880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.95 12.88 -148.98 -1.92 -4.87 16 2 C -0.07 -0.04 2.46 71.23 0.17 0.13 16 3 Si 0.78 -5.53 30.06 68.60 2.06 -3.46 16 4 C -0.33 0.02 5.32 -19.78 -0.11 -0.08 16 5 C 0.17 -1.27 9.99 66.97 0.67 -0.60 16 6 O -0.20 1.11 9.21 -2.65 -0.02 1.09 16 7 C 0.16 -0.26 6.74 22.98 0.15 -0.11 16 8 C -0.23 -0.78 5.89 -20.00 -0.12 -0.90 16 9 C -0.01 -0.04 9.40 22.45 0.21 0.18 16 10 C -0.12 -0.01 6.22 22.32 0.14 0.13 16 11 Br -0.02 0.00 33.69 -20.37 -0.69 -0.69 16 12 C -0.01 0.02 9.10 22.32 0.20 0.22 16 13 C -0.10 0.36 5.89 -19.78 -0.12 0.24 16 14 C 0.12 -0.62 5.38 71.23 0.38 -0.24 16 15 O -0.35 1.90 8.57 -51.46 -0.44 1.46 16 16 C 0.47 -1.84 7.25 71.24 0.52 -1.33 16 17 O -0.53 -1.41 15.73 21.95 0.35 -1.07 16 18 C -0.07 0.71 2.61 -11.53 -0.03 0.68 16 19 C -0.11 1.15 4.95 30.63 0.15 1.31 16 20 C -0.10 1.20 4.62 30.35 0.14 1.34 16 21 C -0.06 0.70 0.60 -52.14 -0.03 0.67 16 22 C 0.11 -1.21 6.89 86.56 0.60 -0.62 16 23 N -0.73 2.92 6.25 -460.33 -2.88 0.04 16 24 C 0.51 1.76 8.44 87.93 0.74 2.50 16 25 O -0.60 -9.15 18.03 -3.04 -0.05 -9.21 16 26 C -0.15 0.63 4.90 30.40 0.15 0.78 16 27 C -0.10 1.25 4.51 30.37 0.14 1.39 16 28 C -0.11 0.96 4.32 30.64 0.13 1.09 16 29 C 0.42 3.14 6.98 25.67 0.18 3.32 16 30 O -0.50 -7.93 16.93 -5.03 -0.09 -8.02 16 31 H 0.39 -1.17 8.70 -74.06 -0.64 -1.81 16 32 H 0.10 0.38 7.96 -2.39 -0.02 0.36 16 33 H -0.30 -0.71 7.11 99.48 0.71 -0.01 16 34 H -0.24 2.11 6.86 99.48 0.68 2.79 16 35 H 0.24 -3.73 4.61 -2.91 -0.01 -3.75 16 36 H 0.14 0.76 7.81 -2.91 -0.02 0.74 16 37 H 0.18 -1.27 6.96 -2.91 -0.02 -1.29 16 38 H 0.10 -0.60 8.13 -2.38 -0.02 -0.62 16 39 H 0.10 -0.59 8.13 -2.39 -0.02 -0.61 16 40 H 0.14 -2.01 8.14 -2.39 -0.02 -2.02 16 41 H 0.09 -1.00 8.10 -2.39 -0.02 -1.02 16 42 H 0.06 -0.43 6.44 -2.39 -0.02 -0.45 16 43 H 0.06 -0.54 8.14 -2.39 -0.02 -0.56 16 44 H 0.10 -1.58 8.14 -2.39 -0.02 -1.60 16 45 H 0.09 -1.24 7.85 -2.39 -0.02 -1.26 16 46 H 0.11 -1.59 7.88 -2.39 -0.02 -1.61 16 47 H 0.41 -2.12 8.96 -92.70 -0.83 -2.95 16 48 H 0.10 -0.33 6.14 -2.39 -0.01 -0.34 16 49 H 0.11 -0.59 7.82 -2.38 -0.02 -0.61 16 50 H 0.08 -1.06 8.08 -2.39 -0.02 -1.08 16 51 H 0.10 -1.63 8.14 -2.38 -0.02 -1.65 16 52 H 0.06 -0.34 7.45 -2.39 -0.02 -0.36 16 53 H 0.07 -0.54 8.09 -2.39 -0.02 -0.56 16 Total: 0.00 -35.04 449.47 0.16 -34.88 By element: Atomic # 1 Polarization: -19.81 SS G_CDS: -0.44 Total: -20.25 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: 4.28 Total: 10.10 kcal Atomic # 7 Polarization: 2.92 SS G_CDS: -2.88 Total: 0.04 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -2.18 Total: -20.62 kcal Atomic # 14 Polarization: -5.53 SS G_CDS: 2.06 Total: -3.46 kcal Atomic # 35 Polarization: 0.00 SS G_CDS: -0.69 Total: -0.69 kcal Total: -35.04 0.16 -34.88 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_15716102_484008.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.307 kcal (2) G-P(sol) polarization free energy of solvation -35.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds