Wall clock time and date at job start Sat Mar 6 2021 06:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86306 * 109.46717 * 2 1 4 4 C 1.50697 * 109.47136 * 119.99678 * 2 1 3 5 5 C 1.34540 * 120.20243 * 250.00542 * 4 2 1 6 6 O 1.33722 * 122.85867 * 179.97438 * 5 4 2 7 7 C 1.34872 * 122.40921 * 359.97438 * 6 5 4 8 8 C 1.38943 * 120.99358 * 179.97438 * 7 6 5 9 9 C 1.50694 * 120.03653 * 0.02562 * 8 7 6 10 10 O 1.45201 * 109.46916 * 179.97438 * 9 8 7 11 11 C 1.34225 * 117.00159 * 179.97438 * 10 9 8 12 12 O 1.20823 * 120.00036 * 0.02562 * 11 10 9 13 13 C 1.50702 * 120.00333 * 180.02562 * 11 10 9 14 14 H 1.09001 * 112.84929 * 48.80217 * 13 11 10 15 15 C 1.53779 * 113.61945 * 180.02562 * 13 11 10 16 16 C 1.53778 * 87.08378 * 139.98009 * 15 13 11 17 17 F 1.39894 * 113.61760 * 89.20221 * 16 15 13 18 18 C 1.50706 * 113.61164 * 220.02083 * 16 15 13 19 19 C 1.38217 * 119.98544 * 108.30886 * 18 16 15 20 20 C 1.38268 * 120.05151 * 179.72083 * 19 18 16 21 21 C 1.38177 * 120.02176 * 0.55236 * 20 19 18 22 22 C 1.38482 * 119.97736 * 359.72142 * 21 20 19 23 23 F 1.35094 * 120.02907 * 179.97438 * 22 21 20 24 24 C 1.38219 * 119.98813 * 288.57584 * 18 16 15 25 25 C 1.53779 * 87.08285 * 334.56760 * 16 15 13 26 26 C 1.37873 * 119.91813 * 180.27745 * 8 7 6 27 27 C 1.38791 * 120.70602 * 359.49051 * 26 8 7 28 28 Br 1.89098 * 119.86268 * 180.26076 * 27 26 8 29 29 C 1.37888 * 120.27297 * 0.50801 * 27 26 8 30 30 C 1.39348 * 119.52591 * 359.75206 * 29 27 26 31 31 C 1.41994 * 120.20415 * 69.98426 * 4 2 1 32 32 O 1.21919 * 121.40858 * 0.02562 * 31 4 2 33 33 H 0.96700 * 114.00039 * 60.00411 * 1 2 3 34 34 H 1.08993 * 109.47450 * 239.99795 * 2 1 3 35 35 H 1.48503 * 109.99900 * 298.67766 * 3 2 1 36 36 H 1.48493 * 110.00246 * 59.99834 * 3 2 1 37 37 H 1.08001 * 118.56978 * 359.94905 * 5 4 2 38 38 H 1.08994 * 109.47489 * 60.00073 * 9 8 7 39 39 H 1.09006 * 109.47195 * 299.99414 * 9 8 7 40 40 H 1.09009 * 113.61068 * 25.43018 * 15 13 11 41 41 H 1.08996 * 113.69264 * 254.54017 * 15 13 11 42 42 H 1.08006 * 119.97800 * 359.97438 * 19 18 16 43 43 H 1.07996 * 119.99045 * 180.27559 * 20 19 18 44 44 H 1.08001 * 120.01293 * 179.74994 * 21 20 19 45 45 H 1.08003 * 120.01083 * 359.97438 * 24 18 16 46 46 H 1.08993 * 113.61612 * 139.98182 * 25 16 15 47 47 H 1.09003 * 113.61264 * 270.88833 * 25 16 15 48 48 H 1.08005 * 119.64491 * 179.74803 * 26 8 7 49 49 H 1.08000 * 120.23988 * 179.76984 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 2.5318 -0.0168 2.2146 6 8 2.9966 -0.5924 3.3285 7 6 2.8980 -1.9188 3.5520 8 6 3.3919 -2.4861 4.7203 9 6 4.0491 -1.6174 5.7615 10 8 4.4764 -2.4403 6.8788 11 6 5.0851 -1.8149 7.8986 12 8 5.2548 -0.6193 7.8592 13 6 5.5568 -2.6039 9.0928 14 1 6.1319 -3.4875 8.8160 15 6 6.2322 -1.7423 10.1728 16 6 5.4990 -2.6082 11.2107 17 9 6.2171 -3.7435 11.6013 18 6 4.9627 -1.8238 12.3805 19 6 3.6017 -1.6198 12.5097 20 6 3.1078 -0.9053 13.5855 21 6 3.9752 -0.3847 14.5266 22 6 5.3394 -0.5836 14.3951 23 9 6.1885 -0.0746 15.3143 24 6 5.8323 -1.3041 13.3207 25 6 4.4492 -2.8855 10.1218 26 6 3.2844 -3.8456 4.9233 27 6 2.6770 -4.6579 3.9759 28 35 2.5359 -6.5185 4.2823 29 6 2.1805 -4.1144 2.8100 30 6 2.2881 -2.7424 2.5915 31 6 1.7734 -2.1156 1.3586 32 8 1.2345 -2.7765 0.4872 33 1 -0.3933 0.4416 -0.7651 34 1 1.7924 -0.5138 -0.8899 35 1 1.5878 2.4586 -1.2243 36 1 1.5613 2.4680 1.2084 37 1 2.6436 1.0513 2.0998 38 1 3.3379 -0.8697 6.1125 39 1 4.9147 -1.1189 5.3250 40 1 5.9091 -0.7013 10.1660 41 1 7.3166 -1.8488 10.2032 42 1 2.9233 -2.0223 11.7720 43 1 2.0439 -0.7503 13.6878 44 1 3.5895 0.1769 15.3646 45 1 6.8959 -1.4603 13.2174 46 1 4.0939 -3.9159 10.1100 47 1 3.6386 -2.1570 10.1011 48 1 3.6734 -4.2825 5.8312 49 1 1.7112 -4.7475 2.0715 There are 80 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 80 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_16481938_484008.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 06:18:55 Heat of formation + Delta-G solvation = -143.182545 kcal Electronic energy + Delta-G solvation = -42364.159413 eV Core-core repulsion = 36294.366137 eV Total energy + Delta-G solvation = -6069.793275 eV No. of doubly occupied orbitals = 80 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 507.030 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -49.97575 -48.88849 -43.33241 -41.91361 -40.45391 -40.15011 -39.83527 -38.58589 -37.92905 -37.39232 -34.73457 -33.72927 -33.17997 -32.56554 -31.61710 -30.71870 -28.83434 -27.48661 -27.23914 -27.17257 -25.84710 -24.39780 -24.21493 -23.60665 -22.46609 -21.90253 -20.76904 -20.51474 -19.64808 -19.26739 -18.73773 -18.56952 -18.41930 -17.89489 -17.61314 -17.50531 -17.44600 -17.13747 -16.85946 -16.77199 -16.62919 -16.49678 -16.27370 -16.03505 -15.98536 -15.78479 -15.54766 -15.37760 -15.37007 -14.97351 -14.83591 -14.53107 -14.43377 -14.29294 -14.11369 -13.99000 -13.80970 -13.63821 -13.45512 -13.33027 -13.02656 -12.93605 -12.72846 -12.61787 -12.55614 -12.50223 -12.25843 -11.98412 -11.80433 -11.73360 -11.49566 -11.48030 -11.38593 -11.17968 -10.68332 -10.49768 -10.40608 -10.09680 -9.78061 -9.57286 -5.00589 -0.84322 -0.69297 0.01331 0.03956 0.13115 0.35540 0.97094 1.04805 1.16058 1.35616 1.40722 1.53373 1.88862 2.27000 2.45905 2.67862 2.83256 2.89529 2.97983 3.05974 3.12166 3.27219 3.30912 3.41375 3.45481 3.51683 3.67767 3.73820 3.82992 3.85245 3.90652 3.98687 4.02860 4.09538 4.10363 4.16346 4.22968 4.31820 4.33249 4.34635 4.50810 4.54989 4.58989 4.63293 4.66216 4.72246 4.78685 4.79547 4.81176 4.98811 5.04336 5.07052 5.14417 5.26683 5.28214 5.36298 5.75019 5.81314 6.30640 6.52489 6.61029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.076 4.076 3 Si 0.781 3.219 4 C -0.298 4.298 5 C 0.170 3.830 6 O -0.200 6.200 7 C 0.164 3.836 8 C -0.096 4.096 9 C 0.116 3.884 10 O -0.348 6.348 11 C 0.484 3.516 12 O -0.523 6.523 13 C -0.103 4.103 14 H 0.153 0.847 15 C -0.130 4.130 16 C 0.134 3.866 17 F -0.189 7.189 18 C -0.087 4.087 19 C -0.111 4.111 20 C -0.088 4.088 21 C -0.151 4.151 22 C 0.074 3.926 23 F -0.152 7.152 24 C -0.144 4.144 25 C -0.128 4.128 26 C -0.006 4.006 27 C -0.120 4.120 28 Br -0.024 7.024 29 C -0.009 4.009 30 C -0.226 4.226 31 C 0.424 3.576 32 O -0.495 6.495 33 H 0.395 0.605 34 H 0.075 0.925 35 H -0.282 1.282 36 H -0.258 1.258 37 H 0.239 0.761 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.111 0.889 41 H 0.100 0.900 42 H 0.162 0.838 43 H 0.165 0.835 44 H 0.150 0.850 45 H 0.136 0.864 46 H 0.119 0.881 47 H 0.123 0.877 48 H 0.179 0.821 49 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.487 3.389 0.953 3.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.182 4.182 3 Si 0.681 3.319 4 C -0.300 4.300 5 C 0.105 3.895 6 O -0.103 6.103 7 C 0.118 3.882 8 C -0.098 4.098 9 C 0.043 3.957 10 O -0.264 6.264 11 C 0.328 3.672 12 O -0.411 6.411 13 C -0.122 4.122 14 H 0.171 0.829 15 C -0.168 4.168 16 C 0.116 3.884 17 F -0.169 7.169 18 C -0.087 4.087 19 C -0.129 4.129 20 C -0.105 4.105 21 C -0.170 4.170 22 C 0.055 3.945 23 F -0.130 7.130 24 C -0.163 4.163 25 C -0.165 4.165 26 C -0.025 4.025 27 C -0.200 4.200 28 Br 0.061 6.939 29 C -0.029 4.029 30 C -0.229 4.229 31 C 0.310 3.690 32 O -0.379 6.379 33 H 0.245 0.755 34 H 0.093 0.907 35 H -0.209 1.209 36 H -0.184 1.184 37 H 0.254 0.746 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.129 0.871 41 H 0.118 0.882 42 H 0.179 0.821 43 H 0.183 0.817 44 H 0.167 0.833 45 H 0.154 0.846 46 H 0.137 0.863 47 H 0.141 0.859 48 H 0.196 0.804 49 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.236 3.312 1.343 3.782 hybrid contribution -0.986 -0.004 -0.910 1.341 sum 0.250 3.307 0.434 3.345 Atomic orbital electron populations 1.86545 1.18807 1.81066 1.50632 1.24942 0.84131 1.12823 0.96257 0.94487 0.89076 0.69436 0.78927 1.20955 1.12107 0.95490 1.01471 1.24387 0.86296 0.98706 0.80155 1.83168 1.68382 1.20626 1.38086 1.18912 0.95280 0.80538 0.93447 1.18842 1.03651 0.94030 0.93239 1.21602 1.00425 0.90695 0.82984 1.86407 1.69603 1.42255 1.28181 1.23595 0.73643 0.86845 0.83100 1.90720 1.53523 1.17173 1.79689 1.22573 1.00329 1.00644 0.88619 0.82940 1.23642 1.02276 1.00111 0.90759 1.20373 0.93754 0.83220 0.91087 1.92907 1.79348 1.52215 1.92447 1.19695 0.94298 0.99174 0.95582 1.21517 0.94033 0.98290 0.99044 1.21419 1.01401 0.95245 0.92464 1.21558 0.91027 1.02216 1.02175 1.17965 0.88475 0.99066 0.89028 1.91490 1.70926 1.85467 1.65144 1.21065 1.01616 0.99340 0.94289 1.23697 0.96236 1.06861 0.89721 1.21255 0.91985 0.90803 0.98484 1.21861 1.07125 0.92929 0.98092 1.96847 1.97470 1.03357 1.96195 1.21111 0.93092 0.93193 0.95468 1.20707 1.08254 0.95434 0.98506 1.18759 0.76368 0.89124 0.84705 1.90723 1.37244 1.67596 1.42303 0.75473 0.90691 1.20880 1.18419 0.74597 0.87928 0.87745 0.87091 0.88191 0.82060 0.81712 0.83258 0.84567 0.86285 0.85902 0.80352 0.83753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.74 12.86 -148.98 -1.92 -4.66 16 2 C -0.08 -0.04 2.45 71.24 0.17 0.14 16 3 Si 0.78 -5.58 30.02 68.60 2.06 -3.53 16 4 C -0.30 -0.62 5.35 -19.78 -0.11 -0.73 16 5 C 0.17 -0.86 9.99 66.97 0.67 -0.19 16 6 O -0.20 0.84 9.21 -2.69 -0.02 0.81 16 7 C 0.16 -0.12 6.74 22.98 0.15 0.03 16 8 C -0.10 0.33 5.89 -19.78 -0.12 0.21 16 9 C 0.12 -0.64 5.38 71.23 0.38 -0.26 16 10 O -0.35 1.87 8.68 -51.37 -0.45 1.43 16 11 C 0.48 -1.82 7.48 71.24 0.53 -1.29 16 12 O -0.52 -1.12 15.65 21.97 0.34 -0.78 16 13 C -0.10 0.76 4.24 -11.01 -0.05 0.72 16 14 H 0.15 -1.60 8.14 -2.39 -0.02 -1.62 16 15 C -0.13 0.64 6.82 31.12 0.21 0.85 16 16 C 0.13 -0.55 1.79 -11.01 -0.02 -0.57 16 17 F -0.19 -0.10 17.22 44.97 0.77 0.67 16 18 C -0.09 0.16 5.20 -19.87 -0.10 0.06 16 19 C -0.11 0.57 9.10 22.27 0.20 0.78 16 20 C -0.09 0.43 10.04 22.26 0.22 0.65 16 21 C -0.15 0.15 10.03 22.31 0.22 0.37 16 22 C 0.07 0.24 7.30 22.38 0.16 0.40 16 23 F -0.15 -1.05 17.27 44.97 0.78 -0.27 16 24 C -0.14 -0.23 9.67 22.31 0.22 -0.02 16 25 C -0.13 1.16 6.30 31.12 0.20 1.35 16 26 C -0.01 0.02 9.10 22.32 0.20 0.22 16 27 C -0.12 -0.05 6.22 22.32 0.14 0.08 16 28 Br -0.02 -0.01 33.69 -20.37 -0.69 -0.70 16 29 C -0.01 -0.03 9.40 22.45 0.21 0.18 16 30 C -0.23 -0.98 5.89 -20.01 -0.12 -1.10 16 31 C 0.42 3.66 6.98 25.67 0.18 3.84 16 32 O -0.50 -8.05 16.93 -5.05 -0.09 -8.13 16 33 H 0.39 -1.32 8.74 -74.06 -0.65 -1.97 16 34 H 0.08 0.08 7.96 -2.39 -0.02 0.06 16 35 H -0.28 0.43 7.11 99.48 0.71 1.14 16 36 H -0.26 1.31 6.91 99.48 0.69 2.00 16 37 H 0.24 -3.03 4.64 -2.91 -0.01 -3.05 16 38 H 0.10 -0.66 8.13 -2.39 -0.02 -0.68 16 39 H 0.10 -0.68 8.13 -2.38 -0.02 -0.70 16 40 H 0.11 -0.33 7.39 -2.38 -0.02 -0.35 16 41 H 0.10 -0.54 8.14 -2.39 -0.02 -0.56 16 42 H 0.16 -1.75 6.11 -2.91 -0.02 -1.77 16 43 H 0.17 -1.73 8.06 -2.91 -0.02 -1.75 16 44 H 0.15 -0.58 8.06 -2.91 -0.02 -0.60 16 45 H 0.14 0.12 8.06 -2.91 -0.02 0.10 16 46 H 0.12 -1.37 8.14 -2.39 -0.02 -1.39 16 47 H 0.12 -1.38 6.39 -2.39 -0.02 -1.39 16 48 H 0.18 -1.19 6.96 -2.91 -0.02 -1.21 16 49 H 0.14 0.79 7.81 -2.91 -0.02 0.77 16 Total: 0.00 -27.22 447.77 4.82 -22.39 By element: Atomic # 1 Polarization: -13.43 SS G_CDS: 0.45 Total: -12.98 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: 3.57 Total: 5.74 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: -2.13 Total: -11.33 kcal Atomic # 9 Polarization: -1.15 SS G_CDS: 1.55 Total: 0.40 kcal Atomic # 14 Polarization: -5.58 SS G_CDS: 2.06 Total: -3.53 kcal Atomic # 35 Polarization: -0.01 SS G_CDS: -0.69 Total: -0.70 kcal Total: -27.22 4.82 -22.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_16481938_484008.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.790 kcal (2) G-P(sol) polarization free energy of solvation -27.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds