Wall clock time and date at job start Sat Mar 6 2021 06:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00258 * 2 1 4 4 H 1.09002 * 112.84974 * 339.66626 * 3 2 1 5 5 C 1.53785 * 113.69063 * 110.93650 * 3 2 1 6 6 C 1.53779 * 87.08093 * 139.99216 * 5 3 2 7 7 H 1.09005 * 113.69135 * 89.12376 * 6 5 3 8 8 C 1.52999 * 113.61451 * 220.01770 * 6 5 3 9 9 C 1.50699 * 109.47130 * 272.49762 * 8 6 5 10 10 O 1.20834 * 119.99791 * 0.02562 * 9 8 6 11 11 O 1.34223 * 120.00251 * 179.97438 * 9 8 6 12 12 C 1.45205 * 117.00247 * 180.02562 * 11 9 8 13 13 C 1.50704 * 109.46842 * 180.02562 * 12 11 9 14 14 C 1.38938 * 120.03535 * 180.02562 * 13 12 11 15 15 O 1.34886 * 120.98774 * 0.02562 * 14 13 12 16 16 C 1.33718 * 122.40888 * 180.02562 * 15 14 13 17 17 C 1.34537 * 122.85357 * 359.95556 * 16 15 14 18 18 C 1.50709 * 120.19546 * 180.02562 * 17 16 15 19 19 O 1.42896 * 109.46580 * 249.97492 * 18 17 16 20 20 Si 1.86294 * 109.47163 * 9.97503 * 18 17 16 21 21 C 1.41995 * 119.60369 * 0.02562 * 17 16 15 22 22 O 1.21915 * 121.41323 * 179.97438 * 21 17 16 23 23 C 1.40450 * 119.33798 * 180.02562 * 14 13 12 24 24 C 1.39351 * 120.24062 * 359.97438 * 23 14 13 25 25 C 1.37890 * 119.51934 * 359.97438 * 24 23 14 26 26 Br 1.89099 * 119.85978 * 180.02562 * 25 24 23 27 27 C 1.37864 * 120.04116 * 359.72671 * 13 12 11 28 28 C 1.53781 * 113.61413 * 208.47320 * 3 2 1 29 29 H 1.09002 * 109.46817 * 60.00169 * 1 2 3 30 30 H 1.08995 * 109.47317 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46781 * 300.00325 * 1 2 3 32 32 H 1.09003 * 113.60734 * 254.54335 * 5 3 2 33 33 H 1.08996 * 113.61146 * 25.43833 * 5 3 2 34 34 H 1.09003 * 109.47100 * 32.49589 * 8 6 5 35 35 H 1.08995 * 109.47213 * 152.50009 * 8 6 5 36 36 H 1.08999 * 109.46669 * 300.00061 * 12 11 9 37 37 H 1.08998 * 109.46820 * 60.00071 * 12 11 9 38 38 H 1.07997 * 118.56856 * 179.97438 * 16 15 14 39 39 H 1.08998 * 109.46740 * 129.98221 * 18 17 16 40 40 H 0.96705 * 113.99984 * 60.00572 * 19 18 17 41 41 H 1.48502 * 109.99851 * 58.68460 * 20 18 17 42 42 H 1.48498 * 109.99837 * 179.97438 * 20 18 17 43 43 H 1.07991 * 120.24351 * 180.02562 * 24 23 14 44 44 H 1.07993 * 119.65457 * 359.97209 * 27 13 12 45 45 H 1.09005 * 113.61302 * 334.47944 * 28 3 2 46 46 H 1.08993 * 113.62030 * 105.38790 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3220 2.0752 -0.3490 5 6 2.7213 1.6652 1.3153 6 6 3.8114 2.3246 0.4540 7 1 3.6169 3.3731 0.2285 8 6 5.2310 2.0813 0.9703 9 6 5.5881 3.1438 1.9776 10 8 4.7889 4.0067 2.2546 11 8 6.7935 3.1309 2.5680 12 6 7.0684 4.1847 3.5284 13 6 8.4588 4.0088 4.0826 14 6 8.9495 4.9028 5.0263 15 8 8.1984 5.9354 5.4611 16 6 8.6422 6.8126 6.3676 17 6 9.8675 6.7368 6.9178 18 6 10.3061 7.7583 7.9353 19 8 11.3144 8.5954 7.3656 20 14 8.8459 8.7998 8.4389 21 6 10.7451 5.6885 6.5340 22 8 11.8626 5.5886 7.0110 23 6 10.2475 4.7254 5.5326 24 6 11.0335 3.6624 5.0919 25 6 10.5274 2.7857 4.1557 26 35 11.5854 1.3394 3.5515 27 6 9.2430 2.9572 3.6585 28 6 3.3923 1.3643 -0.6718 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.1660 2.3713 1.9327 33 1 3.0715 0.7972 1.8738 34 1 5.2826 1.1005 1.4430 35 1 5.9324 2.1205 0.1369 36 1 6.9940 5.1540 3.0355 37 1 6.3438 4.1337 4.3410 38 1 7.9883 7.6166 6.6714 39 1 10.7087 7.2492 8.8110 40 1 11.0256 9.0805 6.5805 41 1 7.7773 7.9369 9.0036 42 1 9.2651 9.8107 9.4425 43 1 12.0314 3.5257 5.4815 44 1 8.8552 2.2619 2.9288 45 1 3.9262 0.4141 -0.6564 46 1 3.3790 1.8275 -1.6583 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_16520498_484008.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 06:38:13 Heat of formation + Delta-G solvation = -140.351220 kcal Electronic energy + Delta-G solvation = -33474.923327 eV Core-core repulsion = 28538.383148 eV Total energy + Delta-G solvation = -4936.540179 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 439.049 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.35610 -41.79890 -40.47359 -40.06006 -39.79530 -37.96211 -37.73495 -37.05938 -34.61991 -33.68503 -33.15779 -31.70011 -30.69688 -28.34083 -27.61573 -27.48674 -26.76171 -25.90122 -24.53050 -24.33343 -22.51517 -21.96703 -20.71924 -20.63645 -19.55170 -19.08338 -18.54068 -18.06458 -18.00077 -17.65225 -17.51886 -17.33933 -16.68900 -16.64495 -16.42748 -16.23520 -16.11273 -16.08906 -15.67260 -15.46527 -15.21780 -15.11844 -14.87635 -14.46682 -14.23626 -14.13691 -14.03304 -13.85191 -13.67354 -13.47594 -13.25999 -12.83146 -12.78689 -12.49401 -12.45352 -12.26987 -12.14580 -11.99880 -11.86966 -11.81518 -11.50292 -11.46746 -11.44237 -11.16929 -10.70301 -10.46127 -10.45637 -10.41540 -9.56639 -5.33947 -0.82439 -0.69820 0.00864 0.36481 0.90146 1.01805 1.10338 1.32832 1.37538 1.46133 1.79527 2.32990 2.70683 2.79284 2.86715 3.10502 3.18836 3.30841 3.39410 3.44923 3.61575 3.65749 3.70058 3.73876 3.79194 3.83564 3.90299 4.00434 4.01903 4.06863 4.21251 4.26432 4.28619 4.34149 4.40752 4.44164 4.52015 4.57638 4.61137 4.66476 4.72466 4.73452 4.76784 4.79004 4.96020 5.01436 5.07378 5.22620 5.30847 5.72055 6.23971 6.42884 6.49754 6.60722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.378 6.378 3 C 0.060 3.940 4 H 0.089 0.911 5 C -0.152 4.152 6 C -0.101 4.101 7 H 0.106 0.894 8 C -0.102 4.102 9 C 0.466 3.534 10 O -0.499 6.499 11 O -0.358 6.358 12 C 0.118 3.882 13 C -0.105 4.105 14 C 0.162 3.838 15 O -0.212 6.212 16 C 0.142 3.858 17 C -0.314 4.314 18 C -0.039 4.039 19 O -0.529 6.529 20 Si 0.674 3.326 21 C 0.433 3.567 22 O -0.440 6.440 23 C -0.211 4.211 24 C 0.002 3.998 25 C -0.120 4.120 26 Br -0.024 7.024 27 C -0.012 4.012 28 C -0.130 4.130 29 H 0.042 0.958 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.202 0.798 39 H 0.121 0.879 40 H 0.376 0.624 41 H -0.248 1.248 42 H -0.243 1.243 43 H 0.156 0.844 44 H 0.162 0.838 45 H 0.095 0.905 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.755 1.216 -4.272 7.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.296 6.296 3 C 0.002 3.998 4 H 0.107 0.893 5 C -0.189 4.189 6 C -0.120 4.120 7 H 0.124 0.876 8 C -0.139 4.139 9 C 0.309 3.691 10 O -0.386 6.386 11 O -0.275 6.275 12 C 0.045 3.955 13 C -0.107 4.107 14 C 0.117 3.883 15 O -0.116 6.116 16 C 0.077 3.923 17 C -0.317 4.317 18 C -0.150 4.150 19 O -0.334 6.334 20 Si 0.574 3.426 21 C 0.315 3.685 22 O -0.318 6.318 23 C -0.214 4.214 24 C -0.018 4.018 25 C -0.200 4.200 26 Br 0.062 6.938 27 C -0.032 4.032 28 C -0.167 4.167 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.109 0.891 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.218 0.782 39 H 0.138 0.862 40 H 0.223 0.777 41 H -0.173 1.173 42 H -0.166 1.166 43 H 0.173 0.827 44 H 0.179 0.821 45 H 0.114 0.886 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.269 0.764 -3.068 6.145 hybrid contribution 0.034 0.184 0.496 0.530 sum -5.234 0.948 -2.571 5.908 Atomic orbital electron populations 1.22809 0.80929 1.02970 1.00047 1.87941 1.19868 1.27227 1.94586 1.23672 0.93948 0.85448 0.96729 0.89346 1.23612 0.97369 1.00686 0.97252 1.22212 0.91901 1.00610 0.97252 0.87600 1.21441 0.98492 0.97074 0.96915 1.23825 0.78840 0.85920 0.80527 1.90706 1.49600 1.37242 1.61027 1.86414 1.36446 1.51115 1.53540 1.21492 0.92242 0.90263 0.91532 1.18809 0.96983 0.96007 0.98904 1.18881 0.89091 0.86649 0.93725 1.83102 1.43774 1.33548 1.51165 1.23791 0.94651 0.89148 0.84698 1.22080 0.96724 1.04754 1.08099 1.24734 1.01068 0.92908 0.96255 1.86612 1.38639 1.60312 1.47795 0.95751 0.76807 0.81795 0.88288 1.18243 0.87254 0.82768 0.80272 1.90783 1.19327 1.71647 1.50065 1.20729 0.94623 1.01593 1.04471 1.21144 0.99835 0.89511 0.91289 1.21853 0.96539 0.98486 1.03099 1.96851 1.68058 1.40655 1.88215 1.21059 0.90518 0.95191 0.96410 1.23293 0.95426 1.00064 0.97959 0.93910 0.89541 0.93943 0.90808 0.89075 0.87075 0.86961 0.88691 0.88789 0.78234 0.86161 0.77708 1.17299 1.16644 0.82673 0.82054 0.88601 0.90389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.85 101.05 1.10 1.07 16 2 O -0.38 -0.52 10.72 -35.23 -0.38 -0.89 16 3 C 0.06 -0.04 4.30 -25.92 -0.11 -0.15 16 4 H 0.09 -0.13 7.88 -51.93 -0.41 -0.54 16 5 C -0.15 0.13 7.47 -25.92 -0.19 -0.06 16 6 C -0.10 0.20 3.15 -89.81 -0.28 -0.08 16 7 H 0.11 -0.13 7.68 -51.93 -0.40 -0.53 16 8 C -0.10 0.31 5.65 -27.88 -0.16 0.15 16 9 C 0.47 -0.28 7.96 36.01 0.29 0.01 16 10 O -0.50 -1.08 15.51 -18.76 -0.29 -1.37 16 11 O -0.36 0.40 8.68 -39.24 -0.34 0.06 16 12 C 0.12 -0.17 5.38 36.01 0.19 0.02 16 13 C -0.11 0.09 5.89 -104.50 -0.62 -0.52 16 14 C 0.16 -0.04 6.74 -38.49 -0.26 -0.30 16 15 O -0.21 0.39 9.21 5.63 0.05 0.44 16 16 C 0.14 -0.43 9.99 29.42 0.29 -0.13 16 17 C -0.31 0.06 5.32 -104.49 -0.56 -0.50 16 18 C -0.04 0.01 2.46 36.01 0.09 0.10 16 19 O -0.53 -0.48 12.88 -35.23 -0.45 -0.94 16 20 Si 0.67 -1.94 29.86 -169.99 -5.08 -7.02 16 21 C 0.43 1.24 6.98 -34.33 -0.24 1.00 16 22 O -0.44 -2.81 16.93 5.00 0.08 -2.72 16 23 C -0.21 -0.30 5.89 -104.84 -0.62 -0.91 16 24 C 0.00 0.00 9.40 -39.29 -0.37 -0.37 16 25 C -0.12 -0.04 6.22 -39.50 -0.25 -0.28 16 26 Br -0.02 -0.01 33.69 -68.01 -2.29 -2.30 16 27 C -0.01 0.01 9.10 -39.51 -0.36 -0.35 16 28 C -0.13 0.26 7.47 -25.92 -0.19 0.06 16 29 H 0.04 -0.07 8.14 -51.93 -0.42 -0.49 16 30 H 0.09 -0.14 8.14 -51.93 -0.42 -0.56 16 31 H 0.04 -0.06 8.14 -51.93 -0.42 -0.48 16 32 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 33 H 0.09 -0.06 7.90 -51.93 -0.41 -0.47 16 34 H 0.11 -0.46 7.84 -51.93 -0.41 -0.86 16 35 H 0.11 -0.53 8.14 -51.93 -0.42 -0.95 16 36 H 0.10 -0.18 8.13 -51.93 -0.42 -0.61 16 37 H 0.09 -0.15 8.13 -51.93 -0.42 -0.58 16 38 H 0.20 -1.36 4.77 -52.49 -0.25 -1.61 16 39 H 0.12 0.18 7.96 -51.93 -0.41 -0.23 16 40 H 0.38 -1.46 8.70 45.56 0.40 -1.06 16 41 H -0.25 0.29 7.11 56.52 0.40 0.69 16 42 H -0.24 -0.20 7.11 56.52 0.40 0.20 16 43 H 0.16 0.21 7.81 -52.49 -0.41 -0.20 16 44 H 0.16 -0.32 6.96 -52.49 -0.37 -0.68 16 45 H 0.10 -0.19 8.10 -51.93 -0.42 -0.61 16 46 H 0.08 -0.20 8.14 -51.93 -0.42 -0.63 16 LS Contribution 412.60 15.07 6.22 6.22 Total: 0.00 -10.02 412.60 -10.38 -20.41 By element: Atomic # 1 Polarization: -4.98 SS G_CDS: -5.67 Total: -10.64 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -2.24 Total: -1.25 kcal Atomic # 8 Polarization: -4.09 SS G_CDS: -1.33 Total: -5.42 kcal Atomic # 14 Polarization: -1.94 SS G_CDS: -5.08 Total: -7.02 kcal Atomic # 35 Polarization: -0.01 SS G_CDS: -2.29 Total: -2.30 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -10.02 -10.38 -20.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_16520498_484008.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.943 kcal (2) G-P(sol) polarization free energy of solvation -10.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds