Wall clock time and date at job start Sat Mar 6 2021 06:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00258 * 2 1 4 4 H 1.09002 * 112.84974 * 339.66626 * 3 2 1 5 5 C 1.53785 * 113.69063 * 110.93650 * 3 2 1 6 6 C 1.53779 * 87.08093 * 139.99216 * 5 3 2 7 7 H 1.09005 * 113.69135 * 89.12376 * 6 5 3 8 8 C 1.52999 * 113.61451 * 220.01770 * 6 5 3 9 9 C 1.50699 * 109.47130 * 272.49762 * 8 6 5 10 10 O 1.20834 * 119.99791 * 0.02562 * 9 8 6 11 11 O 1.34223 * 120.00251 * 179.97438 * 9 8 6 12 12 C 1.45205 * 117.00247 * 180.02562 * 11 9 8 13 13 C 1.50704 * 109.46842 * 180.02562 * 12 11 9 14 14 C 1.38938 * 120.03535 * 180.02562 * 13 12 11 15 15 O 1.34886 * 120.98774 * 0.02562 * 14 13 12 16 16 C 1.33718 * 122.40888 * 180.02562 * 15 14 13 17 17 C 1.34537 * 122.85357 * 359.95556 * 16 15 14 18 18 C 1.50709 * 120.19546 * 180.02562 * 17 16 15 19 19 O 1.42896 * 109.46580 * 249.97492 * 18 17 16 20 20 Si 1.86294 * 109.47163 * 9.97503 * 18 17 16 21 21 C 1.41995 * 119.60369 * 0.02562 * 17 16 15 22 22 O 1.21915 * 121.41323 * 179.97438 * 21 17 16 23 23 C 1.40450 * 119.33798 * 180.02562 * 14 13 12 24 24 C 1.39351 * 120.24062 * 359.97438 * 23 14 13 25 25 C 1.37890 * 119.51934 * 359.97438 * 24 23 14 26 26 Br 1.89099 * 119.85978 * 180.02562 * 25 24 23 27 27 C 1.37864 * 120.04116 * 359.72671 * 13 12 11 28 28 C 1.53781 * 113.61413 * 208.47320 * 3 2 1 29 29 H 1.09002 * 109.46817 * 60.00169 * 1 2 3 30 30 H 1.08995 * 109.47317 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46781 * 300.00325 * 1 2 3 32 32 H 1.09003 * 113.60734 * 254.54335 * 5 3 2 33 33 H 1.08996 * 113.61146 * 25.43833 * 5 3 2 34 34 H 1.09003 * 109.47100 * 32.49589 * 8 6 5 35 35 H 1.08995 * 109.47213 * 152.50009 * 8 6 5 36 36 H 1.08999 * 109.46669 * 300.00061 * 12 11 9 37 37 H 1.08998 * 109.46820 * 60.00071 * 12 11 9 38 38 H 1.07997 * 118.56856 * 179.97438 * 16 15 14 39 39 H 1.08998 * 109.46740 * 129.98221 * 18 17 16 40 40 H 0.96705 * 113.99984 * 60.00572 * 19 18 17 41 41 H 1.48502 * 109.99851 * 58.68460 * 20 18 17 42 42 H 1.48498 * 109.99837 * 179.97438 * 20 18 17 43 43 H 1.07991 * 120.24351 * 180.02562 * 24 23 14 44 44 H 1.07993 * 119.65457 * 359.97209 * 27 13 12 45 45 H 1.09005 * 113.61302 * 334.47944 * 28 3 2 46 46 H 1.08993 * 113.62030 * 105.38790 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3220 2.0752 -0.3490 5 6 2.7213 1.6652 1.3153 6 6 3.8114 2.3246 0.4540 7 1 3.6169 3.3731 0.2285 8 6 5.2310 2.0813 0.9703 9 6 5.5881 3.1438 1.9776 10 8 4.7889 4.0067 2.2546 11 8 6.7935 3.1309 2.5680 12 6 7.0684 4.1847 3.5284 13 6 8.4588 4.0088 4.0826 14 6 8.9495 4.9028 5.0263 15 8 8.1984 5.9354 5.4611 16 6 8.6422 6.8126 6.3676 17 6 9.8675 6.7368 6.9178 18 6 10.3061 7.7583 7.9353 19 8 11.3144 8.5954 7.3656 20 14 8.8459 8.7998 8.4389 21 6 10.7451 5.6885 6.5340 22 8 11.8626 5.5886 7.0110 23 6 10.2475 4.7254 5.5326 24 6 11.0335 3.6624 5.0919 25 6 10.5274 2.7857 4.1557 26 35 11.5854 1.3394 3.5515 27 6 9.2430 2.9572 3.6585 28 6 3.3923 1.3643 -0.6718 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.1660 2.3713 1.9327 33 1 3.0715 0.7972 1.8738 34 1 5.2826 1.1005 1.4430 35 1 5.9324 2.1205 0.1369 36 1 6.9940 5.1540 3.0355 37 1 6.3438 4.1337 4.3410 38 1 7.9883 7.6166 6.6714 39 1 10.7087 7.2492 8.8110 40 1 11.0256 9.0805 6.5805 41 1 7.7773 7.9369 9.0036 42 1 9.2651 9.8107 9.4425 43 1 12.0314 3.5257 5.4815 44 1 8.8552 2.2619 2.9288 45 1 3.9262 0.4141 -0.6564 46 1 3.3790 1.8275 -1.6583 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_16520498_484008.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 06:38:11 Heat of formation + Delta-G solvation = -138.814489 kcal Electronic energy + Delta-G solvation = -33474.856689 eV Core-core repulsion = 28538.383148 eV Total energy + Delta-G solvation = -4936.473541 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 439.049 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -43.34488 -41.71889 -40.37826 -40.17492 -39.79151 -37.94695 -37.72845 -37.00770 -34.63447 -33.69378 -33.16579 -31.54039 -30.71940 -28.26831 -27.52956 -27.47839 -26.62662 -25.90069 -24.49658 -24.27638 -22.50130 -21.87546 -20.69790 -20.49418 -19.54605 -19.06072 -18.47035 -17.99830 -17.93815 -17.60054 -17.47992 -17.28587 -16.73654 -16.56704 -16.41751 -16.23381 -16.05789 -16.03274 -15.59019 -15.48373 -15.29335 -15.13376 -14.83206 -14.45812 -14.18198 -14.09480 -13.97166 -13.74817 -13.55829 -13.34911 -13.23809 -12.77424 -12.66712 -12.43361 -12.37154 -12.23805 -12.09580 -11.89392 -11.81157 -11.73222 -11.52610 -11.41627 -11.29959 -11.27363 -10.70559 -10.44628 -10.41266 -10.39286 -9.58798 -5.14329 -0.85515 -0.70632 0.03614 0.33595 0.97034 1.15784 1.19984 1.39847 1.44828 1.58626 1.96608 2.27164 2.67907 2.85554 2.91439 3.19666 3.31991 3.43265 3.50973 3.60144 3.65834 3.69233 3.81963 3.86726 3.86961 3.94453 3.98652 4.11036 4.15593 4.16642 4.27300 4.31191 4.43574 4.49523 4.55258 4.55396 4.63802 4.66066 4.69283 4.76596 4.78355 4.85495 4.86598 4.91619 5.02693 5.08595 5.20725 5.34759 5.44932 5.74620 6.31095 6.32087 6.70302 6.75770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.400 6.400 3 C 0.050 3.950 4 H 0.093 0.907 5 C -0.154 4.154 6 C -0.094 4.094 7 H 0.098 0.902 8 C -0.099 4.099 9 C 0.469 3.531 10 O -0.530 6.530 11 O -0.356 6.356 12 C 0.117 3.883 13 C -0.097 4.097 14 C 0.166 3.834 15 O -0.201 6.201 16 C 0.179 3.821 17 C -0.342 4.342 18 C -0.063 4.063 19 O -0.558 6.558 20 Si 0.803 3.197 21 C 0.423 3.577 22 O -0.498 6.498 23 C -0.227 4.227 24 C -0.010 4.010 25 C -0.121 4.121 26 Br -0.025 7.025 27 C -0.007 4.007 28 C -0.123 4.123 29 H 0.050 0.950 30 H 0.091 0.909 31 H 0.045 0.955 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.125 0.875 35 H 0.135 0.865 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.247 0.753 39 H 0.089 0.911 40 H 0.395 0.605 41 H -0.258 1.258 42 H -0.296 1.296 43 H 0.143 0.857 44 H 0.177 0.823 45 H 0.098 0.902 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.920 1.570 -5.628 9.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.319 6.319 3 C -0.008 4.008 4 H 0.111 0.889 5 C -0.191 4.191 6 C -0.112 4.112 7 H 0.117 0.883 8 C -0.136 4.136 9 C 0.313 3.687 10 O -0.419 6.419 11 O -0.273 6.273 12 C 0.044 3.956 13 C -0.098 4.098 14 C 0.120 3.880 15 O -0.103 6.103 16 C 0.114 3.886 17 C -0.344 4.344 18 C -0.170 4.170 19 O -0.366 6.366 20 Si 0.704 3.296 21 C 0.310 3.690 22 O -0.381 6.381 23 C -0.230 4.230 24 C -0.030 4.030 25 C -0.200 4.200 26 Br 0.060 6.940 27 C -0.027 4.027 28 C -0.160 4.160 29 H 0.068 0.932 30 H 0.110 0.890 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.143 0.857 35 H 0.153 0.847 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.262 0.738 39 H 0.107 0.893 40 H 0.245 0.755 41 H -0.184 1.184 42 H -0.224 1.224 43 H 0.161 0.839 44 H 0.195 0.805 45 H 0.117 0.883 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.431 1.085 -4.478 8.743 hybrid contribution 0.705 0.059 0.914 1.156 sum -6.726 1.144 -3.564 7.697 Atomic orbital electron populations 1.22918 0.80182 1.03536 1.00569 1.87902 1.20901 1.28396 1.94751 1.23870 0.94697 0.84968 0.97246 0.88869 1.23608 0.97897 1.00466 0.97169 1.22114 0.92266 1.00064 0.96799 0.88335 1.21537 0.98140 0.96823 0.97131 1.24258 0.78382 0.85776 0.80276 1.90700 1.50426 1.38611 1.62128 1.86410 1.36296 1.51112 1.53472 1.21553 0.91581 0.90645 0.91816 1.18876 0.97249 0.95438 0.98257 1.18864 0.88396 0.87109 0.93623 1.83170 1.43172 1.33040 1.50919 1.24426 0.93761 0.88411 0.82049 1.21968 0.97670 1.04841 1.09953 1.25221 1.02628 0.93773 0.95383 1.86551 1.40220 1.60823 1.49014 0.94446 0.73063 0.76842 0.85225 1.18799 0.86985 0.83454 0.79790 1.90749 1.21579 1.73347 1.52430 1.20736 0.95615 1.01722 1.04884 1.21112 0.99670 0.90223 0.92035 1.21868 0.97012 0.98223 1.02945 1.96844 1.68404 1.40604 1.88105 1.21249 0.89868 0.95345 0.96223 1.23258 0.94358 1.00164 0.98245 0.93153 0.89031 0.93659 0.91874 0.89299 0.85658 0.84672 0.87791 0.88235 0.73767 0.89348 0.75547 1.18445 1.22390 0.83889 0.80530 0.88341 0.89546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.04 10.85 113.37 1.23 1.19 16 2 O -0.40 -1.07 10.72 -148.98 -1.60 -2.67 16 3 C 0.05 -0.07 4.30 31.12 0.13 0.06 16 4 H 0.09 -0.28 7.88 -2.39 -0.02 -0.30 16 5 C -0.15 0.29 7.47 31.12 0.23 0.52 16 6 C -0.09 0.46 3.15 -10.27 -0.03 0.43 16 7 H 0.10 -0.30 7.68 -2.38 -0.02 -0.32 16 8 C -0.10 0.78 5.65 29.85 0.17 0.95 16 9 C 0.47 -1.26 7.96 71.24 0.57 -0.69 16 10 O -0.53 -1.78 15.51 21.94 0.34 -1.44 16 11 O -0.36 1.44 8.68 -51.35 -0.45 1.00 16 12 C 0.12 -0.55 5.38 71.24 0.38 -0.16 16 13 C -0.10 0.28 5.89 -19.78 -0.12 0.16 16 14 C 0.17 -0.18 6.74 22.98 0.15 -0.03 16 15 O -0.20 1.13 9.21 -2.79 -0.03 1.10 16 16 C 0.18 -1.39 9.99 66.97 0.67 -0.72 16 17 C -0.34 -0.09 5.32 -19.78 -0.11 -0.19 16 18 C -0.06 -0.06 2.46 71.24 0.17 0.12 16 19 O -0.56 -1.97 12.88 -148.98 -1.92 -3.89 16 20 Si 0.80 -5.61 29.86 68.60 2.05 -3.56 16 21 C 0.42 3.44 6.98 25.67 0.18 3.62 16 22 O -0.50 -8.41 16.93 -5.04 -0.09 -8.50 16 23 C -0.23 -0.94 5.89 -20.00 -0.12 -1.06 16 24 C -0.01 -0.05 9.40 22.46 0.21 0.17 16 25 C -0.12 -0.14 6.22 22.32 0.14 0.00 16 26 Br -0.03 -0.03 33.69 -20.37 -0.69 -0.72 16 27 C -0.01 0.02 9.10 22.31 0.20 0.22 16 28 C -0.12 0.62 7.47 31.12 0.23 0.85 16 29 H 0.05 -0.18 8.14 -2.39 -0.02 -0.20 16 30 H 0.09 -0.30 8.14 -2.39 -0.02 -0.32 16 31 H 0.04 -0.12 8.14 -2.39 -0.02 -0.14 16 32 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 33 H 0.09 -0.14 7.90 -2.39 -0.02 -0.16 16 34 H 0.13 -1.29 7.84 -2.39 -0.02 -1.31 16 35 H 0.14 -1.64 8.14 -2.39 -0.02 -1.66 16 36 H 0.10 -0.62 8.13 -2.39 -0.02 -0.64 16 37 H 0.10 -0.52 8.13 -2.39 -0.02 -0.54 16 38 H 0.25 -4.29 4.77 -2.91 -0.01 -4.30 16 39 H 0.09 0.56 7.96 -2.39 -0.02 0.54 16 40 H 0.39 -2.80 8.70 -74.05 -0.64 -3.45 16 41 H -0.26 1.31 7.11 99.48 0.71 2.01 16 42 H -0.30 -0.61 7.11 99.48 0.71 0.10 16 43 H 0.14 0.89 7.81 -2.92 -0.02 0.86 16 44 H 0.18 -0.96 6.96 -2.91 -0.02 -0.98 16 45 H 0.10 -0.52 8.10 -2.38 -0.02 -0.54 16 46 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 Total: 0.00 -27.57 412.60 2.38 -25.19 By element: Atomic # 1 Polarization: -12.38 SS G_CDS: 0.44 Total: -11.94 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: 4.31 Total: 5.42 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: -3.73 Total: -14.39 kcal Atomic # 14 Polarization: -5.61 SS G_CDS: 2.05 Total: -3.56 kcal Atomic # 35 Polarization: -0.03 SS G_CDS: -0.69 Total: -0.72 kcal Total: -27.57 2.38 -25.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_16520498_484008.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.623 kcal (2) G-P(sol) polarization free energy of solvation -27.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds