Wall clock time and date at job start Sat Mar 6 2021 07:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86296 * 109.47151 * 2 1 4 4 C 1.50699 * 109.46861 * 120.00198 * 2 1 3 5 5 C 1.34540 * 120.20235 * 249.97700 * 4 2 1 6 6 O 1.33716 * 122.84899 * 180.02562 * 5 4 2 7 7 C 1.34879 * 122.41243 * 359.73715 * 6 5 4 8 8 C 1.40416 * 119.67899 * 0.51709 * 7 6 5 9 9 C 1.39396 * 120.23379 * 179.72409 * 8 7 6 10 10 C 1.37845 * 119.51980 * 359.74618 * 9 8 7 11 11 Br 1.89102 * 119.85640 * 180.02562 * 10 9 8 12 12 C 1.38828 * 120.28642 * 0.02768 * 10 9 8 13 13 C 1.37833 * 120.69675 * 359.97438 * 12 10 9 14 14 C 1.50703 * 120.03541 * 179.97438 * 13 12 10 15 15 O 1.45196 * 109.47396 * 359.97438 * 14 13 12 16 16 C 1.34234 * 116.99938 * 180.02562 * 15 14 13 17 17 O 1.20826 * 119.99712 * 359.72483 * 16 15 14 18 18 C 1.50700 * 120.00068 * 180.02562 * 16 15 14 19 19 H 1.08999 * 109.46550 * 59.99877 * 18 16 15 20 20 C 1.52994 * 109.46890 * 179.97438 * 18 16 15 21 21 C 1.53005 * 109.46910 * 179.97438 * 20 18 16 22 22 C 1.52997 * 109.47120 * 300.00311 * 21 20 18 23 23 H 1.08999 * 109.47264 * 299.99272 * 22 21 20 24 24 C 1.53005 * 109.46797 * 179.97438 * 22 21 20 25 25 F 1.39899 * 109.46999 * 60.00033 * 24 22 21 26 26 F 1.39901 * 109.46896 * 179.97438 * 24 22 21 27 27 F 1.39899 * 109.47383 * 299.99818 * 24 22 21 28 28 C 1.53004 * 109.47448 * 59.99971 * 22 21 20 29 29 C 1.52997 * 109.47048 * 300.00099 * 18 16 15 30 30 C 1.41999 * 120.20689 * 69.99942 * 4 2 1 31 31 O 1.21922 * 121.40384 * 359.95168 * 30 4 2 32 32 H 0.96699 * 113.99766 * 299.99831 * 1 2 3 33 33 H 1.08997 * 109.47102 * 239.99555 * 2 1 3 34 34 H 1.48498 * 109.99750 * 178.67774 * 3 2 1 35 35 H 1.48491 * 110.00093 * 300.00085 * 3 2 1 36 36 H 1.07997 * 118.57326 * 0.02562 * 5 4 2 37 37 H 1.07992 * 120.23334 * 179.73039 * 9 8 7 38 38 H 1.08002 * 119.65413 * 179.97438 * 12 10 9 39 39 H 1.09012 * 109.46606 * 239.99379 * 14 13 12 40 40 H 1.08996 * 109.47079 * 119.99957 * 14 13 12 41 41 H 1.09000 * 109.47301 * 299.99645 * 20 18 16 42 42 H 1.08999 * 109.47498 * 60.00613 * 20 18 16 43 43 H 1.09002 * 109.47168 * 60.00243 * 21 20 18 44 44 H 1.08998 * 109.47075 * 179.97438 * 21 20 18 45 45 H 1.08997 * 109.46955 * 59.99513 * 28 22 21 46 46 H 1.08989 * 109.46919 * 179.97438 * 28 22 21 47 47 H 1.09002 * 109.47045 * 300.00076 * 29 18 16 48 48 H 1.08998 * 109.47244 * 60.00058 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 2.5323 -0.0171 2.2144 6 8 2.9978 -0.5931 3.3277 7 6 2.8955 -1.9190 3.5528 8 6 2.2906 -2.7430 2.5901 9 6 2.1839 -4.1157 2.8082 10 6 2.6812 -4.6589 3.9734 11 35 2.5422 -6.5199 4.2788 12 6 3.2836 -3.8457 4.9238 13 6 3.3946 -2.4872 4.7188 14 6 4.0508 -1.6183 5.7606 15 8 4.4784 -2.4412 6.8779 16 6 5.0852 -1.8153 7.8986 17 8 5.2580 -0.6202 7.8575 18 6 5.5570 -2.6043 9.0927 19 1 6.2842 -3.3499 8.7712 20 6 6.2095 -1.6587 10.1032 21 6 6.6880 -2.4597 11.3159 22 6 5.4939 -3.1588 11.9688 23 1 4.7672 -2.4126 12.2900 24 6 5.9726 -3.9602 13.1811 25 9 6.5695 -3.0960 14.1052 26 9 4.8806 -4.5989 13.7784 27 9 6.9051 -4.9179 12.7684 28 6 4.8414 -4.1043 10.9583 29 6 4.3634 -3.3043 9.7455 30 6 1.7737 -2.1159 1.3583 31 8 1.2338 -2.7765 0.4873 32 1 -0.3933 0.4417 0.7651 33 1 1.7924 -0.5139 -0.8899 34 1 3.5346 1.7702 0.0322 35 1 1.5616 2.4678 -1.2084 36 1 2.6434 1.0510 2.1001 37 1 1.7148 -4.7488 2.0697 38 1 3.6693 -4.2820 5.8333 39 1 3.3387 -0.8712 6.1115 40 1 4.9161 -1.1189 5.3247 41 1 7.0600 -1.1604 9.6379 42 1 5.4827 -0.9129 10.4248 43 1 7.4148 -3.2059 10.9947 44 1 7.1532 -1.7861 12.0355 45 1 5.5682 -4.8504 10.6371 46 1 3.9911 -4.6026 11.4236 47 1 3.6362 -2.5587 10.0669 48 1 3.8990 -3.9780 9.0254 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_16657460_484008.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 07:23:47 Heat of formation + Delta-G solvation = -290.008808 kcal Electronic energy + Delta-G solvation = -41621.117405 eV Core-core repulsion = 35432.870233 eV Total energy + Delta-G solvation = -6188.247173 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 491.037 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -51.10838 -48.58391 -48.57312 -43.38758 -42.00972 -40.10043 -40.06885 -39.47544 -37.92074 -37.65075 -34.66478 -33.81513 -33.48428 -33.08027 -32.19920 -30.74107 -28.67010 -27.51364 -27.29641 -25.88894 -24.50820 -24.20810 -24.12623 -22.54828 -22.10468 -21.26546 -20.71774 -19.59490 -19.35592 -19.26347 -19.12568 -18.71590 -18.60172 -18.05357 -17.87248 -17.61367 -17.50590 -16.72530 -16.51832 -16.24254 -16.23346 -16.05437 -15.76475 -15.53235 -15.47506 -15.35447 -15.28068 -15.14722 -14.98068 -14.81184 -14.75888 -14.73202 -14.67555 -14.52528 -14.22757 -14.20072 -14.00462 -13.83320 -13.66969 -13.53910 -13.27311 -12.84781 -12.76395 -12.52068 -12.47259 -12.32579 -12.22832 -12.16498 -11.89560 -11.83910 -11.60562 -11.50871 -11.47184 -11.19213 -10.72885 -10.48075 -10.45157 -9.59743 -5.35457 -0.85387 -0.73000 -0.02101 0.33307 0.87387 0.98044 1.00062 1.22056 1.35760 1.43315 1.70339 1.78183 2.30086 2.65781 2.70798 2.82733 2.83243 2.92596 3.07888 3.15451 3.26780 3.35219 3.36950 3.43989 3.59336 3.66898 3.70677 3.78030 3.80903 3.84499 3.88383 3.93534 3.95213 3.97494 4.03990 4.11409 4.22622 4.23554 4.36595 4.41807 4.49830 4.54453 4.57926 4.62850 4.70639 4.75593 4.75985 4.79534 4.88682 4.97792 5.01269 5.17793 5.69140 6.40480 6.48100 6.49932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.529 6.529 2 C -0.039 4.039 3 Si 0.674 3.326 4 C -0.313 4.313 5 C 0.142 3.858 6 O -0.212 6.212 7 C 0.162 3.838 8 C -0.211 4.211 9 C 0.002 3.998 10 C -0.120 4.120 11 Br -0.023 7.023 12 C -0.012 4.012 13 C -0.106 4.106 14 C 0.118 3.882 15 O -0.354 6.354 16 C 0.470 3.530 17 O -0.497 6.497 18 C -0.082 4.082 19 H 0.116 0.884 20 C -0.101 4.101 21 C -0.119 4.119 22 C -0.136 4.136 23 H 0.118 0.882 24 C 0.453 3.547 25 F -0.183 7.183 26 F -0.183 7.183 27 F -0.182 7.182 28 C -0.119 4.119 29 C -0.108 4.108 30 C 0.433 3.567 31 O -0.439 6.439 32 H 0.376 0.624 33 H 0.121 0.879 34 H -0.248 1.248 35 H -0.243 1.243 36 H 0.202 0.798 37 H 0.156 0.844 38 H 0.162 0.838 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.086 0.914 47 H 0.076 0.924 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.939 3.596 3.455 5.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.333 6.333 2 C -0.150 4.150 3 Si 0.574 3.426 4 C -0.316 4.316 5 C 0.077 3.923 6 O -0.116 6.116 7 C 0.117 3.883 8 C -0.214 4.214 9 C -0.018 4.018 10 C -0.200 4.200 11 Br 0.062 6.938 12 C -0.032 4.032 13 C -0.107 4.107 14 C 0.044 3.956 15 O -0.271 6.271 16 C 0.313 3.687 17 O -0.383 6.383 18 C -0.101 4.101 19 H 0.134 0.866 20 C -0.138 4.138 21 C -0.157 4.157 22 C -0.155 4.155 23 H 0.136 0.864 24 C 0.399 3.601 25 F -0.164 7.164 26 F -0.164 7.164 27 F -0.163 7.163 28 C -0.156 4.156 29 C -0.145 4.145 30 C 0.314 3.686 31 O -0.318 6.318 32 H 0.223 0.777 33 H 0.138 0.862 34 H -0.173 1.173 35 H -0.166 1.166 36 H 0.218 0.782 37 H 0.173 0.827 38 H 0.179 0.821 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.103 0.897 42 H 0.098 0.902 43 H 0.100 0.900 44 H 0.105 0.895 45 H 0.102 0.898 46 H 0.105 0.895 47 H 0.094 0.906 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.327 3.305 2.275 4.227 hybrid contribution 0.129 -0.266 -0.244 0.383 sum 1.456 3.039 2.031 3.935 Atomic orbital electron populations 1.86614 1.16584 1.81476 1.48673 1.24734 0.85628 1.08638 0.95975 0.95751 0.81013 0.76610 0.89276 1.22082 1.10934 0.97326 1.01256 1.23794 0.88914 0.97482 0.82122 1.83098 1.68697 1.21368 1.38438 1.18881 0.95649 0.80221 0.93560 1.20733 1.07406 0.95000 0.98250 1.21148 0.92414 0.93153 0.95036 1.21850 1.07067 0.92852 0.98217 1.96856 1.97445 1.03145 1.96307 1.21046 0.92874 0.90886 0.98388 1.18791 1.04239 0.94028 0.93666 1.21512 0.99908 0.90902 0.83242 1.86404 1.70028 1.42425 1.28288 1.23715 0.74363 0.87367 0.83282 1.90722 1.52153 1.16070 1.79370 1.21218 0.99810 0.98529 0.90557 0.86589 1.21413 1.01749 0.96941 0.93706 1.21639 0.95950 1.00214 0.97856 1.22588 1.01182 0.99006 0.92759 0.86401 1.20594 0.75404 0.78755 0.85329 1.93198 1.84478 1.69648 1.69094 1.93197 1.54403 1.83227 1.85598 1.93183 1.66998 1.66030 1.90106 1.21616 1.01820 0.97393 0.94776 1.21494 0.96046 0.99793 0.97189 1.18247 0.77592 0.87913 0.84821 1.90787 1.34148 1.66436 1.40410 0.77707 0.86155 1.17290 1.16633 0.78215 0.82667 0.82089 0.88652 0.88727 0.89743 0.90195 0.89980 0.89545 0.89827 0.89546 0.90574 0.89287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.35 12.88 -35.23 -0.45 -0.80 16 2 C -0.04 0.02 2.46 36.01 0.09 0.11 16 3 Si 0.67 -2.10 29.86 -169.99 -5.08 -7.18 16 4 C -0.31 0.16 5.32 -104.49 -0.56 -0.39 16 5 C 0.14 -0.48 9.99 29.42 0.29 -0.18 16 6 O -0.21 0.49 9.21 5.65 0.05 0.54 16 7 C 0.16 -0.13 6.74 -38.49 -0.26 -0.39 16 8 C -0.21 -0.20 5.89 -104.84 -0.62 -0.82 16 9 C 0.00 0.00 9.40 -39.29 -0.37 -0.37 16 10 C -0.12 0.03 6.22 -39.51 -0.25 -0.22 16 11 Br -0.02 0.00 33.69 -68.01 -2.29 -2.29 16 12 C -0.01 0.02 9.10 -39.51 -0.36 -0.34 16 13 C -0.11 0.17 5.89 -104.50 -0.62 -0.45 16 14 C 0.12 -0.26 5.38 36.01 0.19 -0.07 16 15 O -0.35 0.75 8.58 -39.27 -0.34 0.42 16 16 C 0.47 -0.72 7.26 36.01 0.26 -0.46 16 17 O -0.50 -0.68 15.73 -18.75 -0.29 -0.98 16 18 C -0.08 0.32 2.63 -91.78 -0.24 0.08 16 19 H 0.12 -0.59 8.14 -51.93 -0.42 -1.01 16 20 C -0.10 0.35 4.49 -26.73 -0.12 0.23 16 21 C -0.12 0.45 4.96 -26.73 -0.13 0.32 16 22 C -0.14 0.47 2.17 -90.62 -0.20 0.27 16 23 H 0.12 -0.51 8.14 -51.93 -0.42 -0.93 16 24 C 0.45 -0.36 2.69 37.16 0.10 -0.26 16 25 F -0.18 -0.11 16.80 2.25 0.04 -0.07 16 26 F -0.18 -0.09 16.80 2.25 0.04 -0.05 16 27 F -0.18 -0.03 16.28 2.25 0.04 0.01 16 28 C -0.12 0.51 4.96 -26.75 -0.13 0.38 16 29 C -0.11 0.50 5.13 -26.76 -0.14 0.37 16 30 C 0.43 1.08 6.98 -34.34 -0.24 0.84 16 31 O -0.44 -2.67 16.93 4.99 0.08 -2.58 16 32 H 0.38 -1.55 8.70 45.56 0.40 -1.16 16 33 H 0.12 0.15 7.96 -51.93 -0.41 -0.26 16 34 H -0.25 0.35 7.11 56.52 0.40 0.76 16 35 H -0.24 -0.15 7.11 56.52 0.40 0.25 16 36 H 0.20 -1.43 4.77 -52.49 -0.25 -1.68 16 37 H 0.16 0.15 7.81 -52.49 -0.41 -0.26 16 38 H 0.16 -0.46 6.96 -52.49 -0.37 -0.82 16 39 H 0.10 -0.25 8.14 -51.92 -0.42 -0.68 16 40 H 0.09 -0.23 8.13 -51.93 -0.42 -0.65 16 41 H 0.08 -0.24 8.10 -51.93 -0.42 -0.66 16 42 H 0.08 -0.23 8.10 -51.93 -0.42 -0.65 16 43 H 0.08 -0.32 7.80 -51.93 -0.41 -0.72 16 44 H 0.09 -0.30 7.80 -51.93 -0.41 -0.71 16 45 H 0.08 -0.36 7.80 -51.93 -0.41 -0.77 16 46 H 0.09 -0.36 7.80 -51.94 -0.41 -0.77 16 47 H 0.08 -0.34 8.14 -51.93 -0.42 -0.77 16 48 H 0.09 -0.46 8.11 -51.93 -0.42 -0.88 16 LS Contribution 431.02 15.07 6.50 6.50 Total: 0.00 -9.98 431.02 -10.23 -20.21 By element: Atomic # 1 Polarization: -7.13 SS G_CDS: -5.24 Total: -12.37 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -3.28 Total: -1.36 kcal Atomic # 8 Polarization: -2.45 SS G_CDS: -0.95 Total: -3.40 kcal Atomic # 9 Polarization: -0.23 SS G_CDS: 0.11 Total: -0.12 kcal Atomic # 14 Polarization: -2.10 SS G_CDS: -5.08 Total: -7.18 kcal Atomic # 35 Polarization: 0.00 SS G_CDS: -2.29 Total: -2.29 kcal Total LS contribution 6.50 Total: 6.50 kcal Total: -9.98 -10.23 -20.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_16657460_484008.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -269.797 kcal (2) G-P(sol) polarization free energy of solvation -9.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -279.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -290.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds