Wall clock time and date at job start Sat Mar 6 2021 05:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86301 * 109.47159 * 2 1 4 4 C 1.50697 * 109.47300 * 120.00065 * 2 1 3 5 5 C 1.34539 * 120.20876 * 249.98106 * 4 2 1 6 6 O 1.33717 * 122.85829 * 180.02562 * 5 4 2 7 7 C 1.34877 * 122.40678 * 359.95656 * 6 5 4 8 8 C 1.40421 * 119.68040 * 0.03873 * 7 6 5 9 9 C 1.39392 * 120.23928 * 179.97438 * 8 7 6 10 10 C 1.37850 * 119.52259 * 0.02562 * 9 8 7 11 11 Br 1.89098 * 119.86080 * 179.97438 * 10 9 8 12 12 C 1.38837 * 120.27513 * 359.76545 * 10 9 8 13 13 C 1.37823 * 120.70329 * 0.49463 * 12 10 9 14 14 C 1.50701 * 120.04012 * 179.75917 * 13 12 10 15 15 O 1.45202 * 109.46859 * 359.72999 * 14 13 12 16 16 C 1.34230 * 116.99836 * 180.02562 * 15 14 13 17 17 O 1.20833 * 119.99930 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00262 * 180.27336 * 16 15 14 19 19 H 1.09001 * 112.84537 * 310.91653 * 18 16 15 20 20 C 1.53781 * 113.61690 * 82.22057 * 18 16 15 21 21 C 1.53780 * 87.08329 * 139.98387 * 20 18 16 22 22 H 1.08997 * 113.69045 * 89.12848 * 21 20 18 23 23 N 1.46498 * 113.61732 * 220.02019 * 21 20 18 24 24 C 1.35488 * 126.97835 * 37.18299 * 23 21 20 25 25 N 1.30523 * 107.30935 * 179.83966 * 24 23 21 26 26 N 1.28596 * 109.66918 * 0.43600 * 25 24 23 27 27 C 1.30519 * 109.67086 * 359.72478 * 26 25 24 28 28 C 1.53776 * 113.61980 * 179.72212 * 18 16 15 29 29 C 1.42006 * 120.20372 * 69.99754 * 4 2 1 30 30 O 1.21919 * 121.40509 * 359.95638 * 29 4 2 31 31 H 0.96699 * 114.00211 * 59.99737 * 1 2 3 32 32 H 1.08996 * 109.47150 * 240.00196 * 2 1 3 33 33 H 1.48501 * 110.00165 * 298.68285 * 3 2 1 34 34 H 1.48496 * 109.99845 * 60.00185 * 3 2 1 35 35 H 1.08008 * 118.56898 * 0.02562 * 5 4 2 36 36 H 1.08000 * 120.23765 * 180.02562 * 9 8 7 37 37 H 1.07998 * 119.64213 * 180.27626 * 12 10 9 38 38 H 1.08998 * 109.47259 * 239.72454 * 14 13 12 39 39 H 1.09004 * 109.46840 * 119.72234 * 14 13 12 40 40 H 1.09001 * 113.61447 * 254.53769 * 20 18 16 41 41 H 1.08998 * 113.61228 * 25.43144 * 20 18 16 42 42 H 1.08009 * 126.34882 * 359.97438 * 24 23 21 43 43 H 1.08010 * 126.34644 * 179.97438 * 27 26 25 44 44 H 1.09004 * 113.60893 * 334.56445 * 28 18 16 45 45 H 1.08995 * 113.61655 * 105.46778 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.5323 -0.0171 2.2144 6 8 2.9980 -0.5930 3.3278 7 6 2.8996 -1.9196 3.5508 8 6 2.2899 -2.7428 2.5905 9 6 2.1825 -4.1154 2.8088 10 6 2.6786 -4.6586 3.9745 11 35 2.5374 -6.5193 4.2809 12 6 3.2855 -3.8460 4.9227 13 6 3.3925 -2.4870 4.7198 14 6 4.0493 -1.6181 5.7614 15 8 4.4766 -2.4412 6.8787 16 6 5.0839 -1.8155 7.8992 17 8 5.2532 -0.6198 7.8600 18 6 5.5606 -2.6053 9.0908 19 1 4.7987 -3.2775 9.4853 20 6 6.9272 -3.2775 8.8777 21 6 7.2576 -2.8866 10.3279 22 1 6.9613 -3.6360 11.0618 23 7 8.6354 -2.4240 10.5117 24 6 9.3645 -1.6729 9.6515 25 7 10.5345 -1.4823 10.1979 26 7 10.5813 -2.0749 11.3383 27 6 9.4414 -2.6654 11.5737 28 6 6.2403 -1.7444 10.1687 29 6 1.7737 -2.1159 1.3583 30 8 1.2339 -2.7765 0.4873 31 1 -0.3933 0.4417 -0.7650 32 1 1.7923 -0.5138 -0.8900 33 1 1.5879 2.4586 -1.2242 34 1 1.5615 2.4678 1.2085 35 1 2.6434 1.0512 2.1001 36 1 1.7139 -4.7486 2.0700 37 1 3.6746 -4.2830 5.8304 38 1 3.3378 -0.8705 6.1120 39 1 4.9150 -1.1196 5.3253 40 1 6.8643 -4.3541 8.7191 41 1 7.5500 -2.7754 8.1374 42 1 9.0375 -1.2990 8.6924 43 1 9.1877 -3.2403 12.4522 44 1 6.6754 -0.8231 9.7813 45 1 5.6228 -1.5833 11.0523 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_17311050_484008.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:14:12 Heat of formation + Delta-G solvation = 3.268025 kcal Electronic energy + Delta-G solvation = -36191.052352 eV Core-core repulsion = 30998.466009 eV Total energy + Delta-G solvation = -5192.586343 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 462.035 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -44.17622 -43.37519 -42.18729 -40.31773 -40.06237 -39.64034 -37.96844 -37.69799 -34.78915 -34.63277 -33.76576 -33.20391 -31.54910 -30.76047 -29.19938 -27.64826 -27.53815 -27.42492 -25.89057 -24.53495 -24.33956 -23.38226 -22.63332 -22.26174 -20.91651 -20.59827 -19.82765 -19.45289 -18.76665 -18.61698 -18.44757 -18.05478 -17.57836 -17.38360 -17.05778 -16.87714 -16.69705 -16.49074 -16.31281 -16.01276 -15.80093 -15.64840 -15.58288 -15.22342 -15.17105 -15.08538 -14.50155 -14.29479 -14.17759 -14.13975 -13.97163 -13.87597 -13.41468 -13.27419 -12.99811 -12.89450 -12.73154 -12.43825 -12.38628 -12.25093 -12.11349 -11.88883 -11.75631 -11.51840 -11.34454 -11.17120 -11.09060 -10.69754 -10.56038 -10.46867 -10.40828 -9.59755 -5.26080 -0.84905 -0.73023 -0.01245 0.31654 0.72985 0.82439 0.88315 0.97401 1.02039 1.29355 1.41463 1.44141 1.68319 1.97266 2.28471 2.57753 2.67824 2.75733 2.79946 2.98458 3.00597 3.13973 3.17014 3.37254 3.42334 3.55438 3.57100 3.63620 3.70468 3.72408 3.75338 3.85535 3.90849 3.96483 4.02097 4.07728 4.17832 4.20423 4.24042 4.32685 4.36941 4.47311 4.53379 4.57761 4.61872 4.76365 4.81775 4.96610 5.05786 5.12475 5.70589 5.79471 6.31850 6.35957 6.42099 7.75777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.530 6.530 2 C -0.049 4.049 3 Si 0.671 3.329 4 C -0.264 4.264 5 C 0.139 3.861 6 O -0.211 6.211 7 C 0.163 3.837 8 C -0.210 4.210 9 C 0.004 3.996 10 C -0.121 4.121 11 Br -0.024 7.024 12 C -0.012 4.012 13 C -0.107 4.107 14 C 0.118 3.882 15 O -0.352 6.352 16 C 0.477 3.523 17 O -0.493 6.493 18 C -0.106 4.106 19 H 0.139 0.861 20 C -0.127 4.127 21 C 0.111 3.889 22 H 0.140 0.860 23 N -0.468 5.468 24 C 0.153 3.847 25 N -0.294 5.294 26 N -0.297 5.297 27 C 0.154 3.846 28 C -0.127 4.127 29 C 0.434 3.566 30 O -0.442 6.442 31 H 0.383 0.617 32 H 0.085 0.915 33 H -0.248 1.248 34 H -0.246 1.246 35 H 0.203 0.797 36 H 0.156 0.844 37 H 0.161 0.839 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.214 0.786 43 H 0.219 0.781 44 H 0.109 0.891 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.958 -0.634 0.955 2.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.337 6.337 2 C -0.158 4.158 3 Si 0.571 3.429 4 C -0.267 4.267 5 C 0.074 3.926 6 O -0.115 6.115 7 C 0.117 3.883 8 C -0.212 4.212 9 C -0.016 4.016 10 C -0.201 4.201 11 Br 0.062 6.938 12 C -0.032 4.032 13 C -0.109 4.109 14 C 0.045 3.955 15 O -0.268 6.268 16 C 0.319 3.681 17 O -0.379 6.379 18 C -0.125 4.125 19 H 0.157 0.843 20 C -0.165 4.165 21 C 0.007 3.993 22 H 0.158 0.842 23 N -0.159 5.159 24 C -0.135 4.135 25 N -0.133 5.133 26 N -0.136 5.136 27 C -0.133 4.133 28 C -0.165 4.165 29 C 0.316 3.684 30 O -0.321 6.321 31 H 0.231 0.769 32 H 0.102 0.898 33 H -0.172 1.172 34 H -0.172 1.172 35 H 0.219 0.781 36 H 0.174 0.826 37 H 0.179 0.821 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.230 0.770 43 H 0.236 0.764 44 H 0.128 0.872 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.832 -0.173 1.481 1.708 hybrid contribution -2.804 -0.137 -1.086 3.010 sum -3.636 -0.310 0.395 3.671 Atomic orbital electron populations 1.86596 1.17325 1.80128 1.49682 1.24345 0.84919 1.09700 0.96838 0.95683 0.91127 0.74324 0.81767 1.20870 1.09689 0.96391 0.99709 1.23871 0.89244 0.97764 0.81684 1.83117 1.68987 1.21228 1.38119 1.18892 0.95506 0.80314 0.93543 1.20718 1.07123 0.95016 0.98391 1.21149 0.92332 0.93125 0.95019 1.21838 1.07136 0.92828 0.98251 1.96851 1.97446 1.03212 1.96294 1.21022 0.92961 0.90855 0.98361 1.18754 1.04557 0.94013 0.93534 1.21550 1.00014 0.90877 0.83091 1.86402 1.69734 1.42397 1.28317 1.23247 0.74488 0.87153 0.83222 1.90747 1.52204 1.15826 1.79147 1.22312 0.98627 0.99351 0.92232 0.84306 1.23415 0.93819 1.03540 0.95748 1.23087 0.77967 0.98633 0.99588 0.84200 1.46478 1.13360 1.39716 1.16383 1.26419 0.89753 0.97988 0.99294 1.74339 1.16941 1.18755 1.03228 1.74322 1.18965 1.10619 1.09687 1.26627 0.88289 1.03780 0.94642 1.23515 0.96278 0.98068 0.98679 1.18235 0.77445 0.87889 0.84814 1.90763 1.34297 1.66474 1.40555 0.76867 0.89751 1.17248 1.17159 0.78093 0.82629 0.82136 0.88624 0.88518 0.87858 0.88128 0.76951 0.76423 0.87215 0.88418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.76 12.86 -35.23 -0.45 -1.21 16 2 C -0.05 0.02 2.45 36.00 0.09 0.11 16 3 Si 0.67 -2.09 30.02 -169.99 -5.10 -7.19 16 4 C -0.26 -0.11 5.35 -104.49 -0.56 -0.67 16 5 C 0.14 -0.30 9.99 29.42 0.29 -0.01 16 6 O -0.21 0.36 9.21 5.65 0.05 0.41 16 7 C 0.16 -0.09 6.74 -38.49 -0.26 -0.35 16 8 C -0.21 -0.24 5.89 -104.84 -0.62 -0.86 16 9 C 0.00 0.00 9.40 -39.29 -0.37 -0.37 16 10 C -0.12 0.05 6.22 -39.50 -0.25 -0.19 16 11 Br -0.02 0.01 33.69 -68.01 -2.29 -2.28 16 12 C -0.01 0.02 9.10 -39.51 -0.36 -0.34 16 13 C -0.11 0.18 5.89 -104.50 -0.62 -0.43 16 14 C 0.12 -0.31 5.38 36.01 0.19 -0.11 16 15 O -0.35 1.03 8.68 -39.26 -0.34 0.69 16 16 C 0.48 -1.30 7.48 36.00 0.27 -1.03 16 17 O -0.49 -0.19 15.65 -18.76 -0.29 -0.48 16 18 C -0.11 0.63 4.26 -90.96 -0.39 0.24 16 19 H 0.14 -1.13 8.14 -51.93 -0.42 -1.55 16 20 C -0.13 0.81 7.19 -25.92 -0.19 0.62 16 21 C 0.11 -0.66 4.66 -67.12 -0.31 -0.97 16 22 H 0.14 -1.18 8.14 -51.93 -0.42 -1.60 16 23 N -0.47 1.02 2.93 -111.97 -0.33 0.69 16 24 C 0.15 0.01 11.59 -89.95 -1.04 -1.03 16 25 N -0.29 -1.34 12.21 29.69 0.36 -0.98 16 26 N -0.30 -1.30 12.21 29.69 0.36 -0.94 16 27 C 0.15 -0.07 12.74 -89.95 -1.15 -1.21 16 28 C -0.13 0.67 7.10 -25.92 -0.18 0.48 16 29 C 0.43 1.25 6.98 -34.33 -0.24 1.01 16 30 O -0.44 -2.65 16.93 4.99 0.08 -2.57 16 31 H 0.38 -1.03 8.74 45.56 0.40 -0.63 16 32 H 0.08 -0.07 7.96 -51.93 -0.41 -0.48 16 33 H -0.25 0.16 7.11 56.52 0.40 0.56 16 34 H -0.25 0.33 6.91 56.52 0.39 0.72 16 35 H 0.20 -1.05 4.64 -52.48 -0.24 -1.29 16 36 H 0.16 0.13 7.81 -52.49 -0.41 -0.28 16 37 H 0.16 -0.53 6.96 -52.49 -0.37 -0.90 16 38 H 0.10 -0.25 8.13 -51.93 -0.42 -0.68 16 39 H 0.10 -0.30 8.13 -51.93 -0.42 -0.72 16 40 H 0.10 -0.77 8.14 -51.93 -0.42 -1.19 16 41 H 0.10 -0.56 6.94 -51.93 -0.36 -0.92 16 42 H 0.21 -0.66 7.51 -52.48 -0.39 -1.05 16 43 H 0.22 -1.02 8.06 -52.48 -0.42 -1.44 16 44 H 0.11 -0.33 7.23 -51.93 -0.38 -0.71 16 45 H 0.10 -0.59 8.14 -51.93 -0.42 -1.01 16 LS Contribution 411.51 15.07 6.20 6.20 Total: 0.00 -14.19 411.51 -11.76 -25.95 By element: Atomic # 1 Polarization: -8.84 SS G_CDS: -4.33 Total: -13.17 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -5.68 Total: -5.11 kcal Atomic # 7 Polarization: -1.63 SS G_CDS: 0.40 Total: -1.24 kcal Atomic # 8 Polarization: -2.21 SS G_CDS: -0.95 Total: -3.16 kcal Atomic # 14 Polarization: -2.09 SS G_CDS: -5.10 Total: -7.19 kcal Atomic # 35 Polarization: 0.01 SS G_CDS: -2.29 Total: -2.28 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -14.19 -11.76 -25.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_17311050_484008.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.216 kcal (2) G-P(sol) polarization free energy of solvation -14.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds