Wall clock time and date at job start Sat Mar 6 2021 05:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00145 * 2 1 4 4 C 1.53001 * 112.85005 * 65.75462 * 3 2 1 5 5 F 1.39898 * 109.47154 * 283.35180 * 4 3 2 6 6 F 1.39904 * 109.46763 * 43.35181 * 4 3 2 7 7 F 1.39901 * 109.47278 * 163.34660 * 4 3 2 8 8 C 1.53780 * 113.61315 * 294.56079 * 3 2 1 9 9 C 1.53778 * 87.08440 * 270.88071 * 8 3 2 10 10 H 1.08996 * 113.61909 * 219.93274 * 9 8 3 11 11 C 1.50703 * 113.61069 * 89.11484 * 9 8 3 12 12 O 1.20818 * 120.00159 * 1.53129 * 11 9 8 13 13 O 1.34233 * 119.99492 * 181.80693 * 11 9 8 14 14 C 1.45200 * 116.99644 * 179.72742 * 13 11 9 15 15 C 1.50700 * 109.47396 * 180.02562 * 14 13 11 16 16 C 1.38932 * 120.04376 * 179.97438 * 15 14 13 17 17 O 1.34882 * 120.99513 * 0.02562 * 16 15 14 18 18 C 1.33712 * 122.41277 * 179.97438 * 17 16 15 19 19 C 1.34543 * 122.85819 * 0.02562 * 18 17 16 20 20 C 1.50701 * 120.20065 * 179.97438 * 19 18 17 21 21 O 1.42904 * 109.46675 * 249.99745 * 20 19 18 22 22 Si 1.86298 * 109.47238 * 9.99808 * 20 19 18 23 23 C 1.41989 * 119.59411 * 359.97438 * 19 18 17 24 24 O 1.21918 * 121.40753 * 180.02562 * 23 19 18 25 25 C 1.40457 * 119.33480 * 179.97438 * 16 15 14 26 26 C 1.39342 * 120.24252 * 0.02562 * 25 16 15 27 27 C 1.37885 * 119.52641 * 359.97438 * 26 25 16 28 28 Br 1.89096 * 119.86734 * 180.02562 * 27 26 25 29 29 C 1.37872 * 120.03716 * 359.72290 * 15 14 13 30 30 C 1.53783 * 87.17159 * 334.52605 * 9 8 3 31 31 H 1.09003 * 109.46745 * 177.88020 * 1 2 3 32 32 H 1.08999 * 109.47068 * 297.88102 * 1 2 3 33 33 H 1.08998 * 109.47431 * 57.87949 * 1 2 3 34 34 H 1.09002 * 113.61233 * 156.33025 * 8 3 2 35 35 H 1.09001 * 113.61835 * 25.43597 * 8 3 2 36 36 H 1.09007 * 109.47280 * 299.99891 * 14 13 11 37 37 H 1.08997 * 109.47649 * 59.99892 * 14 13 11 38 38 H 1.07995 * 118.57133 * 180.02562 * 18 17 16 39 39 H 1.09001 * 109.47337 * 129.99759 * 20 19 18 40 40 H 0.96702 * 113.99566 * 179.97438 * 21 20 19 41 41 H 1.48502 * 109.99789 * 178.68483 * 22 20 19 42 42 H 1.48499 * 110.00222 * 299.99813 * 22 20 19 43 43 H 1.08003 * 120.23659 * 179.97438 * 26 25 16 44 44 H 1.08004 * 119.64519 * 0.02562 * 29 15 14 45 45 H 1.09004 * 113.61338 * 140.02120 * 30 9 8 46 46 H 1.08997 * 113.61464 * 270.92536 * 30 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7230 2.0837 1.2856 5 9 0.4079 2.5602 1.2583 6 9 1.8904 1.2398 2.3888 7 9 2.6080 3.1626 1.3852 8 6 1.7258 2.1064 -1.2815 9 6 3.0037 1.4794 -1.8633 10 1 3.6018 2.1742 -2.4528 11 6 2.7663 0.1684 -2.5675 12 8 1.6462 -0.2758 -2.6557 13 8 3.8000 -0.5086 -3.0920 14 6 3.4978 -1.7669 -3.7505 15 6 4.7719 -2.3794 -4.2725 16 6 4.7350 -3.5950 -4.9442 17 8 3.5695 -4.2447 -5.1410 18 6 3.5012 -5.4153 -5.7837 19 6 4.5840 -6.0379 -6.2837 20 6 4.4379 -7.3570 -6.9976 21 8 5.0023 -8.3971 -6.1965 22 14 2.6318 -7.7085 -7.2894 23 6 5.8653 -5.4444 -6.1346 24 8 6.8684 -5.9794 -6.5750 25 6 5.9314 -4.1521 -5.4249 26 6 7.1421 -3.4909 -5.2286 27 6 7.1573 -2.2854 -4.5595 28 35 8.7949 -1.3794 -4.2884 29 6 5.9750 -1.7316 -4.0886 30 6 3.4939 1.3204 -0.4143 31 1 -0.3633 -1.0270 -0.0380 32 1 -0.3633 0.4806 0.9084 33 1 -0.3634 0.5464 -0.8703 34 1 1.7919 3.1859 -1.1455 35 1 0.8152 1.7987 -1.7958 36 1 3.0334 -2.4479 -3.0372 37 1 2.8139 -1.5879 -4.5800 38 1 2.5347 -5.8812 -5.9069 39 1 4.9584 -7.3121 -7.9542 40 1 4.9430 -9.2763 -6.5947 41 1 2.4758 -8.9914 -8.0208 42 1 1.9108 -7.7723 -5.9927 43 1 8.0621 -3.9195 -5.5980 44 1 5.9981 -0.7850 -3.5690 45 1 4.0100 0.3783 -0.2289 46 1 4.0426 2.1853 -0.0416 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_17315938_484008.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:23:22 Heat of formation + Delta-G solvation = -266.561628 kcal Electronic energy + Delta-G solvation = -42944.967014 eV Core-core repulsion = 36594.592014 eV Total energy + Delta-G solvation = -6350.375000 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 493.021 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -51.22556 -48.75412 -48.70044 -43.33159 -42.22630 -40.52564 -40.14983 -39.68681 -37.95658 -37.60232 -36.81754 -34.72754 -33.71669 -33.16348 -30.72252 -29.99073 -28.40554 -28.01959 -27.48460 -26.76392 -26.07461 -25.33522 -24.33637 -22.85419 -22.28965 -20.96225 -20.49549 -19.75770 -19.60509 -19.51167 -19.35810 -18.74547 -18.60834 -18.32112 -17.82817 -17.57264 -17.41172 -17.03230 -16.73649 -16.48466 -16.37086 -16.20792 -15.79446 -15.73222 -15.62593 -15.55927 -15.54921 -15.37668 -15.25168 -15.13703 -15.00594 -14.86418 -14.82283 -14.44882 -14.32111 -14.15771 -13.98213 -13.81068 -13.54502 -13.37845 -13.20636 -13.10068 -12.93535 -12.65087 -12.47813 -12.29955 -12.20065 -11.98283 -11.77872 -11.71588 -11.49717 -11.45305 -11.18128 -10.87312 -10.68214 -10.49816 -10.40013 -9.57013 -5.00823 -0.84106 -0.69041 0.04069 0.35673 0.97291 1.14816 1.16056 1.36594 1.40986 1.53498 1.55141 1.88809 2.12763 2.27170 2.58664 2.64403 2.68644 2.84519 2.86316 3.11818 3.22517 3.31042 3.32664 3.46475 3.51383 3.59045 3.73859 3.79132 3.85656 3.99823 4.10571 4.17849 4.22989 4.23694 4.28323 4.33508 4.37623 4.43851 4.49910 4.58767 4.61285 4.65486 4.69148 4.73347 4.79483 4.84354 4.85651 5.04946 5.35186 5.75185 5.75774 6.30516 6.52522 6.70204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.344 6.344 3 C 0.024 3.976 4 C 0.435 3.565 5 F -0.186 7.186 6 F -0.188 7.188 7 F -0.171 7.171 8 C -0.132 4.132 9 C -0.095 4.095 10 H 0.166 0.834 11 C 0.483 3.517 12 O -0.508 6.508 13 O -0.350 6.350 14 C 0.121 3.879 15 C -0.096 4.096 16 C 0.163 3.837 17 O -0.201 6.201 18 C 0.169 3.831 19 C -0.298 4.298 20 C -0.076 4.076 21 O -0.561 6.561 22 Si 0.782 3.218 23 C 0.424 3.576 24 O -0.495 6.495 25 C -0.227 4.227 26 C -0.009 4.009 27 C -0.120 4.120 28 Br -0.024 7.024 29 C -0.006 4.006 30 C -0.095 4.095 31 H 0.101 0.899 32 H 0.044 0.956 33 H 0.062 0.938 34 H 0.140 0.860 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.238 0.762 39 H 0.076 0.924 40 H 0.395 0.605 41 H -0.282 1.282 42 H -0.259 1.259 43 H 0.145 0.855 44 H 0.180 0.820 45 H 0.101 0.899 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.106 4.837 -3.011 7.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.261 6.261 3 C -0.019 4.019 4 C 0.380 3.620 5 F -0.167 7.167 6 F -0.170 7.170 7 F -0.153 7.153 8 C -0.169 4.169 9 C -0.113 4.113 10 H 0.184 0.816 11 C 0.326 3.674 12 O -0.395 6.395 13 O -0.267 6.267 14 C 0.047 3.953 15 C -0.098 4.098 16 C 0.118 3.882 17 O -0.103 6.103 18 C 0.104 3.896 19 C -0.300 4.300 20 C -0.182 4.182 21 O -0.371 6.371 22 Si 0.683 3.317 23 C 0.311 3.689 24 O -0.379 6.379 25 C -0.229 4.229 26 C -0.029 4.029 27 C -0.200 4.200 28 Br 0.062 6.938 29 C -0.025 4.025 30 C -0.132 4.132 31 H 0.119 0.881 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.158 0.842 35 H 0.118 0.882 36 H 0.114 0.886 37 H 0.124 0.876 38 H 0.254 0.746 39 H 0.094 0.906 40 H 0.245 0.755 41 H -0.209 1.209 42 H -0.186 1.186 43 H 0.163 0.837 44 H 0.197 0.803 45 H 0.119 0.881 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.927 4.646 -2.518 7.225 hybrid contribution 0.515 -1.675 0.356 1.789 sum -4.412 2.970 -2.161 5.741 Atomic orbital electron populations 1.23046 0.78917 1.04512 1.00973 1.88053 1.21922 1.22297 1.93865 1.24373 1.00899 0.86594 0.89993 1.21429 0.74217 0.78734 0.87585 1.93184 1.37499 1.89250 1.96794 1.93192 1.95118 1.71183 1.57499 1.93179 1.68464 1.57067 1.96566 1.23661 0.99273 1.01895 0.92062 1.21896 1.00460 0.92223 0.96738 0.81639 1.23223 0.82380 0.86147 0.75632 1.90682 1.25274 1.68270 1.55256 1.86361 1.38862 1.34311 1.67123 1.21523 0.92798 0.82918 0.98038 1.18860 0.96210 0.92434 1.02298 1.18920 0.82640 0.91417 0.95266 1.83167 1.30961 1.32227 1.63970 1.24382 1.00766 0.80642 0.83802 1.20956 0.94562 1.01544 1.12943 1.24953 1.13429 0.84941 0.94856 1.86550 1.82281 1.19775 1.48459 0.94483 0.70660 0.86195 0.80412 1.18754 0.89414 0.83883 0.76880 1.90721 1.39483 1.63638 1.44017 1.20710 0.94013 0.99892 1.08320 1.21111 0.97711 0.91810 0.92257 1.21864 0.93976 0.97702 1.06464 1.96842 1.25235 1.75753 1.95948 1.21261 0.87996 0.99820 0.93412 1.23321 0.90478 1.07486 0.91912 0.88053 0.93767 0.91936 0.84208 0.88242 0.88608 0.87629 0.74640 0.90637 0.75476 1.20855 1.18573 0.83716 0.80290 0.88085 0.83189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.00 10.11 113.37 1.15 1.15 16 2 O -0.34 -0.67 8.51 -131.94 -1.12 -1.79 16 3 C 0.02 -0.06 0.85 -10.17 -0.01 -0.07 16 4 C 0.43 0.22 2.51 71.98 0.18 0.40 16 5 F -0.19 -0.37 15.36 44.97 0.69 0.32 16 6 F -0.19 -0.95 17.09 44.97 0.77 -0.18 16 7 F -0.17 0.20 15.83 44.97 0.71 0.91 16 8 C -0.13 0.94 6.33 31.12 0.20 1.13 16 9 C -0.09 0.84 4.45 -11.01 -0.05 0.79 16 10 H 0.17 -2.54 8.14 -2.39 -0.02 -2.56 16 11 C 0.48 -1.56 6.83 71.24 0.49 -1.07 16 12 O -0.51 -1.02 14.17 27.87 0.39 -0.62 16 13 O -0.35 1.57 8.68 -51.45 -0.45 1.12 16 14 C 0.12 -0.52 5.38 71.24 0.38 -0.14 16 15 C -0.10 0.24 5.89 -19.78 -0.12 0.12 16 16 C 0.16 0.02 6.74 22.98 0.15 0.18 16 17 O -0.20 0.65 9.21 -2.70 -0.02 0.63 16 18 C 0.17 -0.73 9.99 66.97 0.67 -0.06 16 19 C -0.30 -0.80 5.35 -19.78 -0.11 -0.90 16 20 C -0.08 -0.07 2.45 71.24 0.17 0.10 16 21 O -0.56 -3.04 12.86 -148.98 -1.92 -4.95 16 22 Si 0.78 -5.30 30.01 68.60 2.06 -3.24 16 23 C 0.42 3.91 6.98 25.67 0.18 4.09 16 24 O -0.50 -8.28 16.93 -5.05 -0.09 -8.37 16 25 C -0.23 -1.14 5.89 -20.00 -0.12 -1.25 16 26 C -0.01 -0.04 9.40 22.45 0.21 0.17 16 27 C -0.12 -0.12 6.22 22.32 0.14 0.02 16 28 Br -0.02 -0.02 33.69 -20.37 -0.69 -0.70 16 29 C -0.01 0.01 9.10 22.32 0.20 0.22 16 30 C -0.10 0.75 6.94 31.21 0.22 0.96 16 31 H 0.10 -0.12 8.14 -2.39 -0.02 -0.14 16 32 H 0.04 0.02 6.54 -2.39 -0.02 0.01 16 33 H 0.06 -0.07 6.63 -2.39 -0.02 -0.09 16 34 H 0.14 -1.59 8.07 -2.39 -0.02 -1.61 16 35 H 0.10 -0.47 5.98 -2.39 -0.01 -0.48 16 36 H 0.10 -0.37 8.13 -2.38 -0.02 -0.39 16 37 H 0.11 -0.63 8.13 -2.39 -0.02 -0.65 16 38 H 0.24 -2.85 4.64 -2.91 -0.01 -2.87 16 39 H 0.08 0.10 7.96 -2.39 -0.02 0.09 16 40 H 0.39 -1.14 8.74 -74.06 -0.65 -1.79 16 41 H -0.28 0.35 7.11 99.48 0.71 1.06 16 42 H -0.26 1.16 6.91 99.48 0.69 1.85 16 43 H 0.15 0.86 7.81 -2.91 -0.02 0.83 16 44 H 0.18 -1.10 6.96 -2.91 -0.02 -1.12 16 45 H 0.10 -0.68 8.09 -2.38 -0.02 -0.70 16 46 H 0.15 -1.80 7.02 -2.39 -0.02 -1.82 16 Total: 0.00 -26.22 418.76 4.78 -21.44 By element: Atomic # 1 Polarization: -10.89 SS G_CDS: 0.49 Total: -10.40 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 3.94 Total: 5.83 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: -3.20 Total: -13.98 kcal Atomic # 9 Polarization: -1.12 SS G_CDS: 2.17 Total: 1.05 kcal Atomic # 14 Polarization: -5.30 SS G_CDS: 2.06 Total: -3.24 kcal Atomic # 35 Polarization: -0.02 SS G_CDS: -0.69 Total: -0.70 kcal Total: -26.22 4.78 -21.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_17315938_484008.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -245.126 kcal (2) G-P(sol) polarization free energy of solvation -26.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -271.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -266.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds