Wall clock time and date at job start Sat Mar 6 2021 05:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86307 * 109.47159 * 2 1 4 4 C 1.50695 * 109.47505 * 120.00560 * 2 1 3 5 5 C 1.34543 * 120.20206 * 250.02445 * 4 2 1 6 6 O 1.33718 * 122.85053 * 179.97438 * 5 4 2 7 7 C 1.34886 * 122.40669 * 0.02562 * 6 5 4 8 8 C 1.40415 * 119.68382 * 359.97438 * 7 6 5 9 9 C 1.39390 * 120.23197 * 179.97438 * 8 7 6 10 10 C 1.37837 * 119.52998 * 0.02562 * 9 8 7 11 11 Br 1.89103 * 119.86341 * 179.97438 * 10 9 8 12 12 C 1.38847 * 120.27597 * 359.96658 * 10 9 8 13 13 C 1.37823 * 120.69985 * 359.79741 * 12 10 9 14 14 C 1.50703 * 120.03791 * 179.97438 * 13 12 10 15 15 O 1.45205 * 109.47116 * 0.48104 * 14 13 12 16 16 C 1.34228 * 116.99806 * 179.97438 * 15 14 13 17 17 O 1.20814 * 120.00183 * 0.02562 * 16 15 14 18 18 C 1.50704 * 119.99556 * 179.97438 * 16 15 14 19 19 H 1.08992 * 112.85324 * 309.67161 * 18 16 15 20 20 C 1.53786 * 113.61058 * 80.87190 * 18 16 15 21 21 C 1.54048 * 86.98876 * 89.15745 * 20 18 16 22 22 O 1.42902 * 113.69001 * 270.87704 * 21 20 18 23 23 C 1.52999 * 113.62007 * 139.97724 * 21 20 18 24 24 F 1.39895 * 109.47080 * 322.50558 * 23 21 20 25 25 F 1.39894 * 109.46813 * 82.50560 * 23 21 20 26 26 F 1.39900 * 109.47017 * 202.50631 * 23 21 20 27 27 C 1.53781 * 113.61189 * 178.47245 * 18 16 15 28 28 C 1.41998 * 120.20813 * 69.99374 * 4 2 1 29 29 O 1.21926 * 121.40183 * 0.02562 * 28 4 2 30 30 H 0.96696 * 114.00006 * 59.99851 * 1 2 3 31 31 H 1.09003 * 109.47013 * 240.00735 * 2 1 3 32 32 H 1.48507 * 109.99375 * 60.00414 * 3 2 1 33 33 H 1.48492 * 109.99865 * 181.31967 * 3 2 1 34 34 H 1.08002 * 118.57596 * 359.97371 * 5 4 2 35 35 H 1.08001 * 120.23166 * 180.02562 * 9 8 7 36 36 H 1.08000 * 119.64568 * 180.02562 * 12 10 9 37 37 H 1.08993 * 109.47496 * 120.48245 * 14 13 12 38 38 H 1.09000 * 109.46789 * 240.48360 * 14 13 12 39 39 H 1.08996 * 113.61343 * 203.66603 * 20 18 16 40 40 H 1.09001 * 113.61513 * 334.56306 * 20 18 16 41 41 H 0.96702 * 113.99632 * 277.52987 * 22 21 20 42 42 H 1.08999 * 113.61377 * 25.43455 * 27 18 16 43 43 H 1.08996 * 113.61806 * 156.33953 * 27 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9314 -0.7105 1.2303 5 6 2.5316 -0.0170 2.2147 6 8 2.9964 -0.5929 3.3284 7 6 2.8990 -1.9197 3.5509 8 6 2.2902 -2.7430 2.5901 9 6 2.1840 -4.1157 2.8080 10 6 2.6803 -4.6590 3.9735 11 35 2.5405 -6.5199 4.2792 12 6 3.2826 -3.8456 4.9241 13 6 3.3975 -2.4878 4.7172 14 6 4.0535 -1.6188 5.7592 15 8 4.4870 -2.4428 6.8734 16 6 5.0954 -1.8172 7.8934 17 8 5.2597 -0.6209 7.8566 18 6 5.5723 -2.6072 9.0849 19 1 4.8034 -3.2629 9.4934 20 6 6.9228 -3.3073 8.8593 21 6 7.5860 -2.0184 9.3811 22 8 7.8562 -1.0573 8.3587 23 6 8.7898 -2.2732 10.2903 24 9 8.5401 -3.3920 11.0921 25 9 9.9252 -2.5052 9.5066 26 9 9.0049 -1.1553 11.1035 27 6 6.2802 -1.7510 10.1482 28 6 1.7738 -2.1159 1.3582 29 8 1.2350 -2.7766 0.4866 30 1 -0.3933 0.4417 -0.7650 31 1 1.7924 -0.5137 -0.8901 32 1 1.5615 2.4678 1.2086 33 1 3.5346 1.7703 -0.0321 34 1 2.6428 1.0512 2.1005 35 1 1.7161 -4.7490 2.0688 36 1 3.6684 -4.2821 5.8335 37 1 4.9160 -1.1157 5.3222 38 1 3.3399 -0.8750 6.1134 39 1 7.0799 -4.1713 9.5048 40 1 7.1365 -3.5164 7.8111 41 1 8.6762 -1.2202 7.8726 42 1 5.9755 -0.7045 10.1399 43 1 6.2621 -2.1902 11.1456 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_17316914_484008.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:25:59 Heat of formation + Delta-G solvation = -276.564614 kcal Electronic energy + Delta-G solvation = -40232.381294 eV Core-core repulsion = 34037.110151 eV Total energy + Delta-G solvation = -6195.271143 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 479.005 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -51.24863 -48.78753 -48.73113 -43.45955 -42.19506 -40.41523 -40.25197 -39.68885 -37.82167 -37.56681 -36.09510 -34.81059 -33.79811 -33.25160 -30.80044 -29.84537 -28.34352 -27.52312 -27.17026 -26.19584 -25.42246 -24.39753 -22.97955 -22.38868 -21.06341 -20.60973 -20.07479 -19.71194 -19.53660 -19.45431 -18.74461 -18.58962 -18.48816 -17.92967 -17.60525 -17.46427 -17.13271 -16.84478 -16.53392 -16.36040 -16.06816 -15.73348 -15.65095 -15.55859 -15.48000 -15.38613 -15.27864 -15.16915 -14.95536 -14.89869 -14.86395 -14.70835 -14.66620 -14.26028 -14.08599 -13.80093 -13.77172 -13.55682 -13.30709 -12.89782 -12.83100 -12.73029 -12.59737 -12.29484 -12.04117 -11.87441 -11.79876 -11.55919 -11.52374 -11.27535 -11.24446 -10.80814 -10.49828 -10.32267 -9.66745 -5.00713 -0.95992 -0.79745 -0.09506 0.28451 0.84101 1.09466 1.16244 1.27821 1.30931 1.50018 1.62053 1.77394 2.17459 2.42438 2.56956 2.57653 2.63052 2.76783 2.82374 3.00168 3.11925 3.20890 3.37495 3.44640 3.49754 3.54221 3.66243 3.72092 3.84411 3.92775 3.96588 4.05144 4.14542 4.20912 4.27053 4.44860 4.50805 4.52084 4.53920 4.58483 4.66845 4.69432 4.77936 4.85174 4.96045 5.27686 5.60707 6.18855 6.27027 6.64978 6.83281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.567 6.567 2 C -0.072 4.072 3 Si 0.781 3.219 4 C -0.292 4.292 5 C 0.149 3.851 6 O -0.207 6.207 7 C 0.159 3.841 8 C -0.227 4.227 9 C -0.005 4.005 10 C -0.119 4.119 11 Br -0.018 7.018 12 C -0.003 4.003 13 C -0.098 4.098 14 C 0.121 3.879 15 O -0.349 6.349 16 C 0.480 3.520 17 O -0.509 6.509 18 C -0.096 4.096 19 H 0.163 0.837 20 C -0.128 4.128 21 C 0.052 3.948 22 O -0.517 6.517 23 C 0.434 3.566 24 F -0.172 7.172 25 F -0.187 7.187 26 F -0.187 7.187 27 C -0.105 4.105 28 C 0.426 3.574 29 O -0.484 6.484 30 H 0.403 0.597 31 H 0.075 0.925 32 H -0.261 1.261 33 H -0.266 1.266 34 H 0.219 0.781 35 H 0.150 0.850 36 H 0.182 0.818 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.143 0.857 40 H 0.105 0.895 41 H 0.398 0.602 42 H 0.090 0.910 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.010 1.403 0.519 1.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.377 6.377 2 C -0.179 4.179 3 Si 0.680 3.320 4 C -0.295 4.295 5 C 0.083 3.917 6 O -0.110 6.110 7 C 0.113 3.887 8 C -0.230 4.230 9 C -0.025 4.025 10 C -0.199 4.199 11 Br 0.068 6.932 12 C -0.022 4.022 13 C -0.099 4.099 14 C 0.047 3.953 15 O -0.266 6.266 16 C 0.323 3.677 17 O -0.395 6.395 18 C -0.115 4.115 19 H 0.181 0.819 20 C -0.165 4.165 21 C 0.008 3.992 22 O -0.325 6.325 23 C 0.380 3.620 24 F -0.153 7.153 25 F -0.168 7.168 26 F -0.169 7.169 27 C -0.142 4.142 28 C 0.311 3.689 29 O -0.366 6.366 30 H 0.254 0.746 31 H 0.093 0.907 32 H -0.187 1.187 33 H -0.191 1.191 34 H 0.234 0.766 35 H 0.167 0.833 36 H 0.199 0.801 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.161 0.839 40 H 0.124 0.876 41 H 0.249 0.751 42 H 0.109 0.891 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.871 1.370 1.503 2.212 hybrid contribution 0.668 -0.351 -0.544 0.930 sum 1.540 1.019 0.959 2.081 Atomic orbital electron populations 1.86446 1.17471 1.82834 1.50949 1.24794 0.86017 1.12240 0.94862 0.93052 0.78459 0.73838 0.86630 1.21274 1.11009 0.96021 1.01164 1.24109 0.88252 0.98068 0.81229 1.83131 1.68667 1.21187 1.37986 1.19004 0.95620 0.80214 0.93823 1.20708 1.08311 0.95597 0.98400 1.21138 0.92898 0.92900 0.95607 1.21886 1.06904 0.93196 0.97891 1.96851 1.97456 1.02736 1.96196 1.21274 0.91842 0.90535 0.98569 1.18849 1.03690 0.94260 0.93120 1.21467 0.99924 0.90683 0.83214 1.86366 1.69806 1.42029 1.28361 1.23349 0.74023 0.87007 0.83319 1.90737 1.52312 1.17193 1.79244 1.21898 1.00195 0.98449 0.90948 0.81949 1.23810 0.90992 0.95935 1.05748 1.23934 0.90690 0.94531 0.90009 1.86792 1.47458 1.50049 1.48204 1.21426 0.85562 0.74128 0.80911 1.93189 1.94004 1.52921 1.75195 1.93179 1.54962 1.94421 1.74244 1.93207 1.95559 1.53135 1.74985 1.23255 0.88972 1.03352 0.98612 1.18671 0.76553 0.88798 0.84855 1.90723 1.36636 1.67329 1.41957 0.74581 0.90692 1.18720 1.19104 0.76574 0.83253 0.80073 0.88485 0.88551 0.83863 0.87646 0.75071 0.89111 0.83748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -1.71 12.86 -148.98 -1.92 -3.63 16 2 C -0.07 -0.08 2.45 71.23 0.17 0.10 16 3 Si 0.78 -5.15 30.02 68.60 2.06 -3.09 16 4 C -0.29 -1.54 5.35 -19.78 -0.11 -1.64 16 5 C 0.15 0.06 9.99 66.97 0.67 0.73 16 6 O -0.21 -0.18 9.21 -2.78 -0.03 -0.20 16 7 C 0.16 0.41 6.74 22.98 0.15 0.56 16 8 C -0.23 -1.46 5.89 -20.01 -0.12 -1.58 16 9 C -0.01 -0.03 9.40 22.45 0.21 0.18 16 10 C -0.12 -0.15 6.22 22.32 0.14 -0.01 16 11 Br -0.02 -0.01 33.69 -20.37 -0.69 -0.70 16 12 C 0.00 0.00 9.10 22.32 0.20 0.21 16 13 C -0.10 0.07 5.89 -19.78 -0.12 -0.05 16 14 C 0.12 -0.25 5.38 71.24 0.38 0.14 16 15 O -0.35 1.07 8.68 -51.40 -0.45 0.62 16 16 C 0.48 -0.63 6.83 71.24 0.49 -0.15 16 17 O -0.51 -2.98 14.38 27.87 0.40 -2.58 16 18 C -0.10 0.76 4.45 -11.01 -0.05 0.71 16 19 H 0.16 -2.27 8.14 -2.39 -0.02 -2.29 16 20 C -0.13 1.20 6.96 31.21 0.22 1.41 16 21 C 0.05 -0.21 1.36 -10.18 -0.01 -0.23 16 22 O -0.52 0.33 11.56 -131.99 -1.53 -1.20 16 23 C 0.43 -0.61 2.85 71.98 0.21 -0.41 16 24 F -0.17 0.42 15.76 44.97 0.71 1.12 16 25 F -0.19 0.02 16.65 44.97 0.75 0.77 16 26 F -0.19 -0.59 17.18 44.97 0.77 0.18 16 27 C -0.10 0.57 6.68 31.12 0.21 0.78 16 28 C 0.43 4.48 6.98 25.67 0.18 4.66 16 29 O -0.48 -8.13 16.93 -5.07 -0.09 -8.22 16 30 H 0.40 -3.14 8.74 -74.06 -0.65 -3.79 16 31 H 0.08 0.09 7.96 -2.39 -0.02 0.07 16 32 H -0.26 0.92 6.91 99.48 0.69 1.61 16 33 H -0.27 0.88 7.11 99.48 0.71 1.59 16 34 H 0.22 -1.13 4.64 -2.91 -0.01 -1.14 16 35 H 0.15 0.85 7.81 -2.91 -0.02 0.83 16 36 H 0.18 -1.04 6.96 -2.91 -0.02 -1.06 16 37 H 0.10 -0.21 8.13 -2.39 -0.02 -0.23 16 38 H 0.10 -0.19 8.13 -2.39 -0.02 -0.21 16 39 H 0.14 -1.86 7.14 -2.39 -0.02 -1.88 16 40 H 0.11 -1.05 8.09 -2.39 -0.02 -1.07 16 41 H 0.40 -2.64 8.42 -74.06 -0.62 -3.27 16 42 H 0.09 -0.05 7.42 -2.39 -0.02 -0.07 16 43 H 0.14 -1.47 7.88 -2.39 -0.02 -1.49 16 Total: 0.00 -26.67 402.92 2.75 -23.92 By element: Atomic # 1 Polarization: -12.33 SS G_CDS: -0.08 Total: -12.41 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 2.83 Total: 5.41 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: -3.60 Total: -15.21 kcal Atomic # 9 Polarization: -0.16 SS G_CDS: 2.23 Total: 2.07 kcal Atomic # 14 Polarization: -5.15 SS G_CDS: 2.06 Total: -3.09 kcal Atomic # 35 Polarization: -0.01 SS G_CDS: -0.69 Total: -0.70 kcal Total: -26.67 2.75 -23.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_17316914_484008.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -252.644 kcal (2) G-P(sol) polarization free energy of solvation -26.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -279.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -276.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds