Wall clock time and date at job start Sat Mar 6 2021 05:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86305 * 1 3 3 C 1.86295 * 110.00221 * 2 1 4 4 C 1.87380 * 109.94664 * 121.21904 * 2 1 3 5 5 C 1.53717 * 107.28135 * 164.90042 * 4 2 1 6 6 C 1.52515 * 109.64221 * 300.87533 * 5 4 2 7 7 C 1.50703 * 109.04472 * 197.55116 * 6 5 4 8 8 O 1.20829 * 119.99664 * 0.02562 * 7 6 5 9 9 O 1.34224 * 120.00385 * 179.97438 * 7 6 5 10 10 C 1.45201 * 117.00076 * 179.97438 * 9 7 6 11 11 C 1.50701 * 109.47239 * 180.02562 * 10 9 7 12 12 C 1.37820 * 120.03901 * 359.71944 * 11 10 9 13 13 C 1.38836 * 120.70646 * 179.81012 * 12 11 10 14 14 Br 1.89098 * 119.86729 * 180.21935 * 13 12 11 15 15 C 1.37853 * 120.27300 * 0.45308 * 13 12 11 16 16 C 1.39394 * 119.52299 * 359.78894 * 15 13 12 17 17 C 1.38984 * 120.04075 * 180.02562 * 11 10 9 18 18 O 1.34881 * 120.98146 * 359.97438 * 17 11 10 19 19 C 1.33709 * 122.40765 * 180.02562 * 18 17 11 20 20 C 1.34544 * 122.85303 * 359.95541 * 19 18 17 21 21 C 1.50702 * 120.20547 * 180.02562 * 20 19 18 22 22 O 1.42899 * 109.47096 * 119.97978 * 21 20 19 23 23 Si 1.86296 * 109.47000 * 359.97438 * 21 20 19 24 24 H 1.48502 * 109.47099 * 299.99742 * 23 21 20 25 25 H 1.48506 * 109.47312 * 59.99791 * 23 21 20 26 26 H 1.48504 * 109.47362 * 179.97438 * 23 21 20 27 27 C 1.41999 * 119.59055 * 0.02562 * 20 19 18 28 28 O 1.21924 * 121.40809 * 179.97438 * 27 20 19 29 29 C 1.52526 * 111.65724 * 76.99445 * 6 5 4 30 30 C 1.53714 * 109.63776 * 283.00641 * 29 6 5 31 31 H 1.08996 * 109.46898 * 298.78559 * 1 2 3 32 32 H 1.09004 * 109.46817 * 58.78178 * 1 2 3 33 33 H 1.08997 * 109.47130 * 178.77720 * 1 2 3 34 34 H 1.09003 * 109.47139 * 181.21886 * 3 2 1 35 35 H 1.09005 * 109.47366 * 301.21939 * 3 2 1 36 36 H 1.08994 * 109.47482 * 61.21948 * 3 2 1 37 37 H 1.08999 * 109.89206 * 45.45829 * 4 2 1 38 38 H 1.08994 * 109.89087 * 284.34567 * 4 2 1 39 39 H 1.09004 * 109.44094 * 60.92915 * 5 4 2 40 40 H 1.08999 * 109.44126 * 180.82208 * 5 4 2 41 41 H 1.08998 * 109.04601 * 316.43018 * 6 5 4 42 42 H 1.09005 * 109.47534 * 300.00750 * 10 9 7 43 43 H 1.08996 * 109.47219 * 60.00338 * 10 9 7 44 44 H 1.08009 * 119.65276 * 0.02562 * 12 11 10 45 45 H 1.08000 * 120.23591 * 179.76669 * 15 13 12 46 46 H 1.08003 * 118.57434 * 179.97438 * 19 18 17 47 47 H 1.08995 * 109.47243 * 239.97854 * 21 20 19 48 48 H 0.96701 * 114.00344 * 180.02562 * 22 21 20 49 49 H 1.08993 * 109.44158 * 43.05651 * 29 6 5 50 50 H 1.08996 * 109.44342 * 162.95520 * 29 6 5 51 51 H 1.09005 * 109.89091 * 178.57223 * 30 29 6 52 52 H 1.08997 * 109.89439 * 299.68042 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.5003 1.7506 0.0000 4 6 2.5023 -0.9130 1.5063 5 6 3.9902 -1.2118 1.2618 6 6 4.1431 -2.0547 0.0000 7 6 5.5064 -2.6970 -0.0001 8 8 6.2685 -2.4970 0.9160 9 8 5.8738 -3.4920 -1.0173 10 6 7.2014 -4.0762 -0.9511 11 6 7.4354 -4.9311 -2.1699 12 6 6.4488 -5.0572 -3.1239 13 6 6.6511 -5.8380 -4.2540 14 35 5.2834 -5.9894 -5.5510 15 6 7.8430 -6.5072 -4.4321 16 6 8.8463 -6.3910 -3.4714 17 6 8.6441 -5.5983 -2.3301 18 8 9.6221 -5.4946 -1.4071 19 6 10.7955 -6.1233 -1.5326 20 6 11.0945 -6.9076 -2.5841 21 6 12.4364 -7.5888 -2.6646 22 8 12.2497 -9.0047 -2.7126 23 14 13.4483 -7.1463 -1.1643 24 1 13.6424 -5.6748 -1.1146 25 1 12.7387 -7.5937 0.0611 26 1 14.7704 -7.8180 -1.2432 27 6 10.1379 -7.0896 -3.6176 28 8 10.3741 -7.7925 -4.5855 29 6 3.9901 -1.2118 -1.2620 30 6 2.5023 -0.9129 -1.5064 31 1 -0.3633 0.4948 0.9006 32 1 -0.3633 0.5327 -0.8789 33 1 -0.3633 -1.0274 -0.0219 34 1 3.5901 1.7406 -0.0219 35 1 2.1240 2.2742 -0.8789 36 1 2.1597 2.2613 0.9006 37 1 1.9530 -1.8455 1.6356 38 1 2.3901 -0.2894 2.3932 39 1 4.5333 -0.2746 1.1402 40 1 4.3954 -1.7575 2.1139 41 1 3.3833 -2.8362 -0.0001 42 1 7.9468 -3.2816 -0.9164 43 1 7.2837 -4.6908 -0.0547 44 1 5.5095 -4.5404 -2.9928 45 1 7.9983 -7.1174 -5.3096 46 1 11.5353 -5.9963 -0.7560 47 1 12.9573 -7.2603 -3.5639 48 1 13.0734 -9.5086 -2.7650 49 1 4.5332 -0.2747 -1.1403 50 1 4.3953 -1.7574 -2.1141 51 1 2.3901 -0.2894 -2.3934 52 1 1.9530 -1.8455 -1.6356 RHF calculation, no. of doubly occupied orbitals= 73 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_17543216_484008.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:57:40 Heat of formation + Delta-G solvation = -168.907127 kcal Electronic energy + Delta-G solvation = -36135.153517 eV Core-core repulsion = 31235.850532 eV Total energy + Delta-G solvation = -4899.302986 eV No. of doubly occupied orbitals = 73 Molecular weight (most abundant/longest-lived isotopes) = 468.065 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -43.35982 -41.81925 -40.14786 -39.89493 -38.12163 -37.73197 -37.02053 -34.74824 -33.73805 -33.18853 -31.93894 -30.74133 -29.50127 -28.75637 -28.29354 -27.54375 -27.46404 -25.88531 -24.36022 -23.44079 -23.12431 -22.34883 -21.06154 -20.60106 -19.64682 -18.83132 -18.55150 -18.44496 -17.89088 -17.68798 -17.39942 -16.79452 -16.46281 -16.37175 -16.06262 -15.86275 -15.60502 -15.37417 -15.30390 -15.14421 -14.87297 -14.75649 -14.24496 -14.09579 -13.98444 -13.87214 -13.83695 -13.66378 -13.42007 -13.31282 -13.20889 -13.12894 -12.99727 -12.86844 -12.79775 -12.67555 -12.33080 -12.27458 -12.07712 -11.99119 -11.94136 -11.84337 -11.75601 -11.50820 -11.41450 -11.17079 -10.73407 -10.67411 -10.44393 -10.35857 -10.26087 -10.04310 -9.57369 -0.86501 -0.71717 0.00533 0.33175 0.92255 1.03235 1.11724 1.38158 1.38904 1.40440 1.50134 1.85085 1.93789 2.03770 2.07892 2.26396 2.66861 2.75407 2.84183 3.09163 3.23680 3.48346 3.54514 3.70515 3.72334 3.80695 3.91031 3.94237 3.98072 4.06359 4.10735 4.22652 4.25287 4.33476 4.43762 4.58469 4.60400 4.61475 4.64370 4.74382 4.76807 4.86298 4.87183 4.90574 4.90644 4.91778 4.96550 5.02004 5.22218 5.24437 5.28652 5.38184 5.52429 5.57589 5.67868 5.71673 5.71830 6.31007 6.63594 6.77497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.462 4.462 2 Si 1.055 2.945 3 C -0.466 4.466 4 C -0.415 4.415 5 C -0.099 4.099 6 C -0.083 4.083 7 C 0.470 3.530 8 O -0.532 6.532 9 O -0.350 6.350 10 C 0.116 3.884 11 C -0.098 4.098 12 C -0.006 4.006 13 C -0.120 4.120 14 Br -0.022 7.022 15 C -0.006 4.006 16 C -0.227 4.227 17 C 0.163 3.837 18 O -0.204 6.204 19 C 0.151 3.849 20 C -0.293 4.293 21 C -0.072 4.072 22 O -0.565 6.565 23 Si 0.967 3.033 24 H -0.227 1.227 25 H -0.243 1.243 26 H -0.245 1.245 27 C 0.426 3.574 28 O -0.485 6.485 29 C -0.104 4.104 30 C -0.407 4.407 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.133 0.867 42 H 0.100 0.900 43 H 0.098 0.902 44 H 0.178 0.822 45 H 0.148 0.852 46 H 0.228 0.772 47 H 0.080 0.920 48 H 0.397 0.603 49 H 0.072 0.928 50 H 0.080 0.920 51 H 0.086 0.914 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.027 4.072 3.085 5.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.247 2.753 3 C -0.572 4.572 4 C -0.499 4.499 5 C -0.136 4.136 6 C -0.102 4.102 7 C 0.314 3.686 8 O -0.421 6.421 9 O -0.267 6.267 10 C 0.042 3.958 11 C -0.100 4.100 12 C -0.026 4.026 13 C -0.200 4.200 14 Br 0.064 6.936 15 C -0.026 4.026 16 C -0.229 4.229 17 C 0.117 3.883 18 O -0.107 6.107 19 C 0.086 3.914 20 C -0.296 4.296 21 C -0.179 4.179 22 O -0.374 6.374 23 Si 0.785 3.215 24 H -0.150 1.150 25 H -0.166 1.166 26 H -0.169 1.169 27 C 0.311 3.689 28 O -0.367 6.367 29 C -0.142 4.142 30 C -0.493 4.493 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.150 0.850 42 H 0.118 0.882 43 H 0.116 0.884 44 H 0.195 0.805 45 H 0.166 0.834 46 H 0.244 0.756 47 H 0.098 0.902 48 H 0.248 0.752 49 H 0.091 0.909 50 H 0.099 0.901 51 H 0.105 0.895 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.352 4.225 3.297 5.528 hybrid contribution 1.032 -0.731 -0.457 1.344 sum -0.321 3.495 2.841 4.515 Atomic orbital electron populations 1.26257 1.21799 1.04599 1.04228 0.78679 0.65178 0.65519 0.65888 1.26343 1.06372 1.20216 1.04262 1.26449 0.98636 1.09113 1.15723 1.21141 0.97654 0.99595 0.95223 1.21307 0.89962 1.00036 0.98913 1.24385 0.90557 0.75242 0.78404 1.90691 1.54696 1.59900 1.36770 1.86402 1.34585 1.59001 1.46693 1.21544 0.82558 0.96428 0.95226 1.18833 0.91032 1.01413 0.98685 1.21241 0.99503 0.93015 0.88806 1.21864 0.95384 1.04812 0.97943 1.96839 1.46747 1.97641 1.52393 1.21131 0.89765 0.94242 0.97505 1.20747 0.99241 1.05269 0.97693 1.18934 0.87529 0.94837 0.87027 1.83138 1.21436 1.62060 1.44057 1.24168 0.83830 0.87267 0.96103 1.21126 1.01269 1.08057 0.99125 1.24702 0.96417 0.84381 1.12411 1.86476 1.37279 1.16047 1.97579 0.85514 0.78807 0.82032 0.75160 1.15033 1.16603 1.16880 1.18659 0.85606 0.78792 0.85806 1.90726 1.79874 1.34024 1.32072 1.21252 0.98405 0.99623 0.94880 1.26325 0.98659 1.09245 1.15072 0.91643 0.91347 0.90912 0.91457 0.91280 0.91637 0.89687 0.90186 0.91150 0.92253 0.84973 0.88167 0.88376 0.80477 0.83414 0.75637 0.90243 0.75227 0.90915 0.90141 0.89482 0.89167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.64 8.65 113.37 0.98 3.62 16 2 Si 1.06 -8.90 11.59 68.60 0.80 -8.11 16 3 C -0.47 2.24 8.65 113.37 0.98 3.22 16 4 C -0.41 2.44 4.98 72.22 0.36 2.80 16 5 C -0.10 0.26 4.52 30.67 0.14 0.40 16 6 C -0.08 0.35 2.21 -11.86 -0.03 0.33 16 7 C 0.47 0.31 7.23 71.24 0.52 0.82 16 8 O -0.53 -3.67 15.35 21.96 0.34 -3.34 16 9 O -0.35 0.51 8.18 -51.35 -0.42 0.09 16 10 C 0.12 -0.20 5.38 71.24 0.38 0.18 16 11 C -0.10 0.05 5.89 -19.78 -0.12 -0.07 16 12 C -0.01 0.00 9.10 22.31 0.20 0.21 16 13 C -0.12 -0.24 6.22 22.32 0.14 -0.10 16 14 Br -0.02 -0.03 33.69 -20.37 -0.69 -0.72 16 15 C -0.01 -0.03 9.40 22.46 0.21 0.18 16 16 C -0.23 -1.36 5.89 -20.01 -0.12 -1.48 16 17 C 0.16 0.30 6.74 22.98 0.15 0.45 16 18 O -0.20 0.21 9.21 -2.66 -0.02 0.19 16 19 C 0.15 -0.35 10.00 66.97 0.67 0.32 16 20 C -0.29 -1.05 5.43 -19.78 -0.11 -1.16 16 21 C -0.07 -0.04 2.53 71.24 0.18 0.14 16 22 O -0.56 -2.26 12.49 -147.91 -1.85 -4.10 16 23 Si 0.97 -5.69 25.09 68.60 1.72 -3.97 16 24 H -0.23 1.83 7.11 99.48 0.71 2.54 16 25 H -0.24 1.27 7.11 99.48 0.71 1.98 16 26 H -0.25 1.19 7.11 99.48 0.71 1.89 16 27 C 0.43 4.16 6.91 25.67 0.18 4.34 16 28 O -0.48 -8.07 16.66 -4.00 -0.07 -8.14 16 29 C -0.10 0.65 4.95 30.68 0.15 0.81 16 30 C -0.41 3.40 4.98 72.22 0.36 3.76 16 31 H 0.06 -0.31 7.96 -2.39 -0.02 -0.33 16 32 H 0.07 -0.36 7.96 -2.38 -0.02 -0.37 16 33 H 0.07 -0.44 7.96 -2.39 -0.02 -0.46 16 34 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 35 H 0.07 -0.32 7.96 -2.38 -0.02 -0.34 16 36 H 0.06 -0.26 7.96 -2.39 -0.02 -0.27 16 37 H 0.08 -0.59 7.99 -2.39 -0.02 -0.61 16 38 H 0.08 -0.42 7.99 -2.39 -0.02 -0.44 16 39 H 0.07 -0.17 7.69 -2.38 -0.02 -0.19 16 40 H 0.06 0.08 7.40 -2.39 -0.02 0.06 16 41 H 0.13 -1.04 7.90 -2.39 -0.02 -1.05 16 42 H 0.10 -0.25 8.14 -2.38 -0.02 -0.27 16 43 H 0.10 -0.21 8.13 -2.39 -0.02 -0.23 16 44 H 0.18 -0.74 6.96 -2.91 -0.02 -0.76 16 45 H 0.15 0.90 7.81 -2.91 -0.02 0.88 16 46 H 0.23 -2.17 4.66 -2.91 -0.01 -2.18 16 47 H 0.08 -0.02 7.96 -2.39 -0.02 -0.04 16 48 H 0.40 -2.15 8.74 -74.06 -0.65 -2.80 16 49 H 0.07 -0.45 7.69 -2.39 -0.02 -0.47 16 50 H 0.08 -0.51 7.59 -2.39 -0.02 -0.53 16 51 H 0.09 -0.75 7.99 -2.38 -0.02 -0.77 16 52 H 0.09 -0.87 7.99 -2.39 -0.02 -0.89 16 Total: 0.00 -21.39 443.66 6.12 -15.26 By element: Atomic # 1 Polarization: -7.02 SS G_CDS: 1.08 Total: -5.94 kcal Atomic # 6 Polarization: 13.54 SS G_CDS: 5.24 Total: 18.78 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -2.02 Total: -15.31 kcal Atomic # 14 Polarization: -14.60 SS G_CDS: 2.52 Total: -12.08 kcal Atomic # 35 Polarization: -0.03 SS G_CDS: -0.69 Total: -0.72 kcal Total: -21.39 6.12 -15.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_17543216_484008.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.643 kcal (2) G-P(sol) polarization free energy of solvation -21.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds