Wall clock time and date at job start Sat Mar 6 2021 06:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 112.91195 * 2 1 4 4 C 1.53775 * 113.61592 * 131.25701 * 2 1 3 5 5 C 1.53779 * 87.08247 * 89.11350 * 4 2 1 6 6 H 1.09004 * 113.61525 * 270.79692 * 5 4 2 7 7 C 1.50700 * 113.61522 * 139.98278 * 5 4 2 8 8 O 1.20830 * 120.00209 * 0.02562 * 7 5 4 9 9 O 1.34233 * 120.00349 * 179.97438 * 7 5 4 10 10 C 1.45192 * 117.00580 * 180.02562 * 9 7 5 11 11 C 1.50700 * 109.47400 * 180.02562 * 10 9 7 12 12 C 1.38941 * 120.03687 * 179.97438 * 11 10 9 13 13 O 1.34873 * 120.98482 * 0.02898 * 12 11 10 14 14 C 1.33724 * 122.41237 * 179.97438 * 13 12 11 15 15 C 1.34539 * 122.84709 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.19563 * 179.97438 * 15 14 13 17 17 O 1.42906 * 109.47319 * 250.00203 * 16 15 14 18 18 Si 1.86309 * 109.47269 * 9.99868 * 16 15 14 19 19 C 1.41996 * 119.60242 * 0.02562 * 15 14 13 20 20 O 1.21920 * 121.40792 * 179.97438 * 19 15 14 21 21 C 1.40457 * 119.33555 * 180.02562 * 12 11 10 22 22 C 1.39351 * 120.23766 * 359.95680 * 21 12 11 23 23 C 1.37882 * 119.52367 * 359.97438 * 22 21 12 24 24 Br 1.89096 * 119.85919 * 180.02562 * 23 22 21 25 25 C 1.37865 * 120.04120 * 359.93845 * 11 10 9 26 26 C 1.53775 * 87.08155 * 25.43465 * 5 4 2 27 27 H 1.09005 * 109.46966 * 288.74775 * 1 2 3 28 28 H 1.08999 * 109.47156 * 48.74183 * 1 2 3 29 29 H 1.09000 * 109.47315 * 168.74248 * 1 2 3 30 30 H 0.96703 * 114.00000 * 311.26011 * 3 2 1 31 31 H 1.09003 * 113.61365 * 334.56878 * 4 2 1 32 32 H 1.08995 * 113.69396 * 203.67343 * 4 2 1 33 33 H 1.08997 * 109.47062 * 60.00029 * 10 9 7 34 34 H 1.09011 * 109.47142 * 300.00440 * 10 9 7 35 35 H 1.07989 * 118.57297 * 179.72390 * 14 13 12 36 36 H 1.09000 * 109.47198 * 129.99680 * 16 15 14 37 37 H 0.96695 * 114.00026 * 59.99765 * 17 16 15 38 38 H 1.48497 * 110.00067 * 179.97438 * 18 16 15 39 39 H 1.48494 * 109.99741 * 301.32054 * 18 16 15 40 40 H 1.07993 * 120.23452 * 180.02562 * 22 21 12 41 41 H 1.08005 * 119.64605 * 0.03244 * 25 11 10 42 42 H 1.08999 * 113.61433 * 89.12034 * 26 5 4 43 43 H 1.09004 * 113.61393 * 220.01889 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0863 1.3162 0.0000 4 6 2.1460 -0.9291 1.0592 5 6 2.0929 -2.0425 -0.0002 6 1 1.1573 -2.6019 0.0008 7 6 3.3078 -2.9342 -0.0003 8 8 4.2029 -2.7358 0.7867 9 8 3.3951 -3.9495 -0.8740 10 6 4.5934 -4.7674 -0.8166 11 6 4.5144 -5.8483 -1.8637 12 6 5.5534 -6.7605 -2.0014 13 8 6.6423 -6.6975 -1.2080 14 6 7.6582 -7.5605 -1.3153 15 6 7.6770 -8.5567 -2.2193 16 6 8.8540 -9.4955 -2.2883 17 8 9.5875 -9.2522 -3.4904 18 14 9.9613 -9.2123 -0.8170 19 6 6.5819 -8.7176 -3.1087 20 8 6.5648 -9.6085 -3.9409 21 6 5.4648 -7.7616 -2.9825 22 6 4.3446 -7.8380 -3.8080 23 6 3.3237 -6.9241 -3.6542 24 35 1.7990 -7.0194 -4.7686 25 6 3.4109 -5.9338 -2.6857 26 6 2.1460 -0.9290 -1.0594 27 1 -0.3633 0.3303 0.9732 28 1 -0.3633 0.6777 -0.7725 29 1 -0.3634 -1.0079 -0.2006 30 1 1.7028 1.9053 -0.6641 31 1 1.4945 -1.1088 1.9144 32 1 3.1590 -0.6510 1.3499 33 1 4.6757 -5.2225 0.1704 34 1 5.4680 -4.1442 -1.0034 35 1 8.5021 -7.4501 -0.6506 36 1 8.4979 -10.5256 -2.2821 37 1 9.9352 -8.3529 -3.5638 38 1 11.1255 -10.1325 -0.8730 39 1 10.4279 -7.8028 -0.7964 40 1 4.2763 -8.6080 -4.5620 41 1 2.6058 -5.2225 -2.5747 42 1 3.1590 -0.6499 -1.3491 43 1 1.4944 -1.1085 -1.9147 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_17637880_484008.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 06:33:19 Heat of formation + Delta-G solvation = -141.069484 kcal Electronic energy + Delta-G solvation = -32047.559418 eV Core-core repulsion = 27266.525712 eV Total energy + Delta-G solvation = -4781.033706 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 425.033 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.36021 -42.11965 -40.52277 -40.06447 -39.73900 -37.99858 -37.62849 -36.00084 -34.63018 -33.68210 -33.14317 -30.75037 -30.54069 -28.55108 -27.50164 -27.05256 -26.41076 -25.63059 -24.45378 -22.64314 -22.18230 -20.77117 -20.13852 -19.61906 -19.20017 -18.88216 -18.16504 -18.00644 -17.65300 -17.51938 -17.21490 -16.67668 -16.47961 -16.39817 -16.26644 -16.04641 -15.70530 -15.65168 -15.34548 -15.11875 -14.76853 -14.61906 -14.46040 -14.09382 -14.06755 -13.90459 -13.84308 -13.33874 -13.22455 -12.91039 -12.83645 -12.61623 -12.53176 -12.31577 -12.24631 -11.94477 -11.85716 -11.83914 -11.49168 -11.45800 -11.24502 -10.91184 -10.71630 -10.56977 -10.42579 -9.57496 -5.21829 -0.82801 -0.70425 0.00529 0.35256 0.90488 1.01606 1.02593 1.26782 1.28404 1.44168 1.77584 2.32341 2.70057 2.83850 3.00793 3.08839 3.14184 3.19286 3.22755 3.29581 3.43512 3.55433 3.60431 3.66452 3.78060 3.83827 3.89748 3.99615 4.05507 4.06948 4.24411 4.26124 4.26949 4.48308 4.52676 4.56914 4.58940 4.60596 4.65762 4.77436 4.78648 4.85988 4.96496 5.00705 5.10543 5.22391 5.72187 6.31382 6.42946 6.55842 6.59497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.104 3.896 3 O -0.548 6.548 4 C -0.104 4.104 5 C -0.109 4.109 6 H 0.131 0.869 7 C 0.478 3.522 8 O -0.496 6.496 9 O -0.354 6.354 10 C 0.117 3.883 11 C -0.105 4.105 12 C 0.162 3.838 13 O -0.212 6.212 14 C 0.137 3.863 15 C -0.310 4.310 16 C -0.047 4.047 17 O -0.517 6.517 18 Si 0.676 3.324 19 C 0.433 3.567 20 O -0.439 6.439 21 C -0.211 4.211 22 C 0.002 3.998 23 C -0.120 4.120 24 Br -0.024 7.024 25 C -0.012 4.012 26 C -0.146 4.146 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.380 0.620 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.203 0.797 36 H 0.125 0.875 37 H 0.373 0.627 38 H -0.245 1.245 39 H -0.252 1.252 40 H 0.156 0.844 41 H 0.161 0.839 42 H 0.096 0.904 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.455 3.406 3.292 5.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.063 3.937 3 O -0.354 6.354 4 C -0.141 4.141 5 C -0.128 4.128 6 H 0.149 0.851 7 C 0.320 3.680 8 O -0.382 6.382 9 O -0.271 6.271 10 C 0.043 3.957 11 C -0.107 4.107 12 C 0.116 3.884 13 O -0.115 6.115 14 C 0.072 3.928 15 C -0.313 4.313 16 C -0.157 4.157 17 O -0.323 6.323 18 Si 0.576 3.424 19 C 0.315 3.685 20 O -0.318 6.318 21 C -0.214 4.214 22 C -0.017 4.017 23 C -0.200 4.200 24 Br 0.062 6.938 25 C -0.032 4.032 26 C -0.184 4.184 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.228 0.772 31 H 0.106 0.894 32 H 0.125 0.875 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.218 0.782 36 H 0.143 0.857 37 H 0.220 0.780 38 H -0.168 1.168 39 H -0.177 1.177 40 H 0.174 0.826 41 H 0.179 0.821 42 H 0.115 0.885 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.741 2.452 3.469 5.055 hybrid contribution 0.435 0.612 -1.287 1.491 sum -2.305 3.064 2.182 4.412 Atomic orbital electron populations 1.22207 0.93058 1.03427 1.03514 1.22505 0.92738 0.82465 0.96029 1.86595 1.65210 1.22310 1.61289 1.23121 1.04070 0.90919 0.96028 1.22328 0.95548 0.93544 1.01364 0.85117 1.23441 0.88484 0.78764 0.77300 1.90717 1.39947 1.69598 1.37933 1.86412 1.42896 1.41057 1.56718 1.21517 0.86359 0.89843 0.97951 1.18796 0.93456 0.97554 1.00876 1.18889 0.85410 0.94314 0.89748 1.83114 1.24666 1.50423 1.53338 1.23974 0.87786 0.85969 0.95119 1.22001 1.02763 1.03271 1.03264 1.24705 0.92892 1.01407 0.96674 1.86714 1.71458 1.35403 1.38689 0.95580 0.83113 0.80956 0.82757 1.18236 0.84197 0.83135 0.82940 1.90784 1.78736 1.30130 1.32135 1.20728 0.99905 1.00262 1.00472 1.21142 0.89105 0.95837 0.95665 1.21839 0.96313 1.00907 1.00916 1.96847 1.34413 1.98410 1.64155 1.21050 0.96666 0.95342 0.90129 1.23713 1.03516 0.93883 0.97262 0.90945 0.91397 0.90804 0.77210 0.89438 0.87453 0.88610 0.88800 0.78153 0.85704 0.78007 1.16843 1.17719 0.82649 0.82101 0.88542 0.89450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.59 9.32 37.16 0.35 0.94 16 2 C 0.10 -0.19 1.94 -89.81 -0.17 -0.37 16 3 O -0.55 0.15 13.50 -35.23 -0.48 -0.33 16 4 C -0.10 0.10 6.83 -25.92 -0.18 -0.08 16 5 C -0.11 0.23 3.91 -90.96 -0.36 -0.13 16 6 H 0.13 -0.57 7.66 -51.93 -0.40 -0.96 16 7 C 0.48 0.11 7.48 36.01 0.27 0.38 16 8 O -0.50 -1.60 15.65 -18.75 -0.29 -1.89 16 9 O -0.35 0.26 8.68 -39.27 -0.34 -0.08 16 10 C 0.12 -0.13 5.38 36.01 0.19 0.06 16 11 C -0.11 0.08 5.89 -104.50 -0.62 -0.53 16 12 C 0.16 -0.03 6.74 -38.49 -0.26 -0.29 16 13 O -0.21 0.33 9.21 5.64 0.05 0.38 16 14 C 0.14 -0.36 9.99 29.42 0.29 -0.07 16 15 C -0.31 0.07 5.32 -104.49 -0.56 -0.49 16 16 C -0.05 0.01 2.46 36.01 0.09 0.10 16 17 O -0.52 -0.94 12.88 -35.23 -0.45 -1.40 16 18 Si 0.68 -1.93 30.06 -169.99 -5.11 -7.04 16 19 C 0.43 1.17 6.98 -34.34 -0.24 0.93 16 20 O -0.44 -2.69 16.93 4.99 0.08 -2.61 16 21 C -0.21 -0.28 5.89 -104.84 -0.62 -0.89 16 22 C 0.00 0.00 9.40 -39.30 -0.37 -0.37 16 23 C -0.12 -0.02 6.22 -39.51 -0.25 -0.27 16 24 Br -0.02 0.00 33.69 -68.01 -2.29 -2.30 16 25 C -0.01 0.01 9.10 -39.51 -0.36 -0.35 16 26 C -0.15 0.35 7.02 -25.92 -0.18 0.17 16 27 H 0.07 -0.22 8.14 -51.93 -0.42 -0.65 16 28 H 0.07 -0.29 8.14 -51.93 -0.42 -0.71 16 29 H 0.07 -0.34 7.34 -51.93 -0.38 -0.72 16 30 H 0.38 -1.57 9.04 45.56 0.41 -1.15 16 31 H 0.09 -0.17 8.10 -51.93 -0.42 -0.59 16 32 H 0.11 0.14 7.43 -51.93 -0.39 -0.24 16 33 H 0.10 -0.15 8.13 -51.93 -0.42 -0.57 16 34 H 0.09 -0.12 8.14 -51.92 -0.42 -0.54 16 35 H 0.20 -1.15 4.61 -52.49 -0.24 -1.39 16 36 H 0.13 0.04 7.96 -51.93 -0.41 -0.37 16 37 H 0.37 -0.71 8.70 45.56 0.40 -0.31 16 38 H -0.24 -0.22 7.11 56.52 0.40 0.18 16 39 H -0.25 0.58 6.85 56.52 0.39 0.97 16 40 H 0.16 0.18 7.81 -52.49 -0.41 -0.23 16 41 H 0.16 -0.32 6.96 -52.48 -0.37 -0.69 16 42 H 0.10 -0.11 8.09 -51.93 -0.42 -0.53 16 43 H 0.09 -0.34 8.10 -51.93 -0.42 -0.76 16 LS Contribution 388.77 15.07 5.86 5.86 Total: 0.00 -10.04 388.77 -9.88 -19.91 By element: Atomic # 1 Polarization: -5.31 SS G_CDS: -3.95 Total: -9.26 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -2.96 Total: -1.25 kcal Atomic # 8 Polarization: -4.49 SS G_CDS: -1.43 Total: -5.92 kcal Atomic # 14 Polarization: -1.93 SS G_CDS: -5.11 Total: -7.04 kcal Atomic # 35 Polarization: 0.00 SS G_CDS: -2.29 Total: -2.30 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -10.04 -9.88 -19.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_17637880_484008.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.155 kcal (2) G-P(sol) polarization free energy of solvation -10.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds