Wall clock time and date at job start Sat Mar 6 2021 07:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86298 * 109.46961 * 2 1 4 4 C 1.50705 * 109.47008 * 119.99736 * 2 1 3 5 5 C 1.34537 * 120.20286 * 249.98494 * 4 2 1 6 6 O 1.33716 * 122.86049 * 180.02562 * 5 4 2 7 7 C 1.34886 * 122.40393 * 359.95317 * 6 5 4 8 8 C 1.38944 * 120.98466 * 180.02562 * 7 6 5 9 9 C 1.50698 * 120.04052 * 0.03858 * 8 7 6 10 10 O 1.45202 * 109.46967 * 179.97438 * 9 8 7 11 11 C 1.34230 * 116.99652 * 180.02562 * 10 9 8 12 12 O 1.20820 * 120.00498 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99676 * 179.97438 * 11 10 9 14 14 H 1.09000 * 112.85049 * 50.32927 * 13 11 10 15 15 C 1.53782 * 113.61685 * 181.52885 * 13 11 10 16 16 C 1.53778 * 87.08288 * 139.97783 * 15 13 11 17 17 O 1.42907 * 113.61307 * 220.01812 * 16 15 13 18 18 C 1.50701 * 113.61366 * 89.20281 * 16 15 13 19 19 C 1.38219 * 119.98984 * 279.75558 * 18 16 15 20 20 C 1.38267 * 120.02274 * 179.76832 * 19 18 16 21 21 C 1.38190 * 120.01192 * 0.50606 * 20 19 18 22 22 C 1.38376 * 119.98908 * 359.75045 * 21 20 19 23 23 Cl 1.73598 * 120.01257 * 179.97438 * 22 21 20 24 24 C 1.38230 * 119.99225 * 100.03033 * 18 16 15 25 25 C 1.53783 * 113.61338 * 279.13456 * 13 11 10 26 26 C 1.37866 * 119.91614 * 180.02562 * 8 7 6 27 27 C 1.38793 * 120.70548 * 359.97438 * 26 8 7 28 28 Br 1.89099 * 119.86353 * 179.97438 * 27 26 8 29 29 C 1.37889 * 120.27386 * 0.27832 * 27 26 8 30 30 C 1.39347 * 119.52377 * 359.49526 * 29 27 26 31 31 C 1.42000 * 120.20254 * 70.00417 * 4 2 1 32 32 O 1.21923 * 121.40545 * 359.95034 * 31 4 2 33 33 H 0.96695 * 114.00042 * 60.00470 * 1 2 3 34 34 H 1.08997 * 109.47229 * 239.99846 * 2 1 3 35 35 H 1.48507 * 109.99961 * 59.99670 * 3 2 1 36 36 H 1.48496 * 110.00378 * 181.31199 * 3 2 1 37 37 H 1.07999 * 118.57245 * 0.02562 * 5 4 2 38 38 H 1.08999 * 109.47022 * 299.97982 * 9 8 7 39 39 H 1.09000 * 109.47108 * 59.98074 * 9 8 7 40 40 H 1.09002 * 113.61079 * 254.53148 * 15 13 11 41 41 H 1.09005 * 113.61225 * 25.42664 * 15 13 11 42 42 H 0.96703 * 113.99606 * 179.97438 * 17 16 15 43 43 H 1.07996 * 119.98983 * 359.97438 * 19 18 16 44 44 H 1.08005 * 119.99202 * 180.25473 * 20 19 18 45 45 H 1.08006 * 120.00493 * 179.72280 * 21 20 19 46 46 H 1.07997 * 120.01282 * 0.02562 * 24 18 16 47 47 H 1.09003 * 113.61353 * 334.56542 * 25 13 11 48 48 H 1.08993 * 113.61648 * 105.47218 * 25 13 11 49 49 H 1.08000 * 119.64510 * 179.97438 * 26 8 7 50 50 H 1.08000 * 120.23146 * 179.74644 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 2.5322 -0.0169 2.2145 6 8 2.9978 -0.5926 3.3279 7 6 2.8995 -1.9192 3.5512 8 6 3.3933 -2.4865 4.7195 9 6 4.0500 -1.6176 5.7610 10 8 4.4775 -2.4406 6.8783 11 6 5.0847 -1.8148 7.8988 12 8 5.2540 -0.6192 7.8596 13 6 5.5554 -2.6036 9.0935 14 1 6.1535 -3.4723 8.8182 15 6 6.1964 -1.7370 10.1903 16 6 5.4664 -2.6268 11.2102 17 8 4.9258 -1.9033 12.3177 18 6 6.2595 -3.8366 11.6326 19 6 6.2982 -4.9551 10.8215 20 6 7.0295 -6.0637 11.2061 21 6 7.7138 -6.0578 12.4067 22 6 7.6711 -4.9403 13.2217 23 17 8.5298 -4.9325 14.7304 24 6 6.9435 -3.8295 12.8338 25 6 4.4384 -2.9194 10.1021 26 6 3.2815 -3.8452 4.9248 27 6 2.6785 -4.6582 3.9751 28 35 2.5385 -6.5190 4.2809 29 6 2.1867 -4.1155 2.8068 30 6 2.2898 -2.7427 2.5906 31 6 1.7738 -2.1158 1.3584 32 8 1.2340 -2.7764 0.4874 33 1 -0.3933 0.4416 -0.7650 34 1 1.7924 -0.5138 -0.8899 35 1 1.5614 2.4679 1.2085 36 1 3.5345 1.7704 -0.0319 37 1 2.6432 1.0512 2.1002 38 1 4.9156 -1.1189 5.3249 39 1 3.3385 -0.8701 6.1117 40 1 7.2822 -1.8219 10.2350 41 1 5.8514 -0.7030 10.1871 42 1 4.4651 -2.4576 12.9624 43 1 5.7597 -4.9619 9.8854 44 1 7.0628 -6.9359 10.5700 45 1 8.2814 -6.9255 12.7092 46 1 6.9092 -2.9573 13.4698 47 1 3.6119 -2.2093 10.0748 48 1 4.1070 -3.9574 10.0758 49 1 3.6672 -4.2816 5.8343 50 1 1.7213 -4.7493 2.0665 There are 80 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 80 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_17797546_484008.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 07:28:59 Heat of formation + Delta-G solvation = -107.377965 kcal Electronic energy + Delta-G solvation = -42151.930316 eV Core-core repulsion = 36344.115610 eV Total energy + Delta-G solvation = -5807.814705 eV No. of doubly occupied orbitals = 80 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 521.010 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -43.45769 -42.38918 -41.16160 -40.25045 -39.93130 -39.14099 -37.85911 -37.67758 -37.34027 -36.11547 -34.81271 -33.79876 -33.25351 -32.12066 -31.61172 -30.78994 -28.89102 -27.52125 -27.19028 -26.98683 -25.94843 -24.41658 -24.08823 -23.61067 -22.57564 -22.04023 -20.79250 -20.35225 -19.78820 -19.35557 -18.67318 -18.58971 -18.52089 -17.95351 -17.81312 -17.50928 -17.35692 -16.87042 -16.57331 -16.46207 -16.30419 -16.22313 -16.03812 -15.74298 -15.58741 -15.53881 -15.28539 -15.14280 -14.83011 -14.71682 -14.66156 -14.42979 -14.22903 -14.04191 -13.78127 -13.63117 -13.59027 -13.26671 -13.13403 -12.90824 -12.86755 -12.71630 -12.45844 -12.37311 -12.34176 -12.23201 -12.10662 -12.04572 -11.89059 -11.76093 -11.54101 -11.46849 -11.24480 -10.98188 -10.80573 -10.49666 -10.32375 -9.95645 -9.72684 -9.66338 -5.01361 -0.95783 -0.79293 -0.09255 0.06853 0.20142 0.29030 0.84351 0.99623 1.12203 1.15822 1.26766 1.31223 1.61377 1.76797 2.17726 2.52244 2.57478 2.75770 2.99087 3.07456 3.10546 3.14728 3.21431 3.35344 3.47984 3.55358 3.66686 3.71003 3.82436 3.84375 3.88961 3.92313 3.96739 3.99150 4.03934 4.10086 4.14552 4.22406 4.27927 4.36100 4.52022 4.53938 4.56834 4.58731 4.62844 4.66155 4.69638 4.83781 4.84671 4.86720 4.96380 5.08028 5.20674 5.23283 5.33279 5.37773 5.60847 5.76407 6.19098 6.53925 6.70848 6.83223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.567 6.567 2 C -0.071 4.071 3 Si 0.779 3.221 4 C -0.292 4.292 5 C 0.149 3.851 6 O -0.207 6.207 7 C 0.159 3.841 8 C -0.098 4.098 9 C 0.117 3.883 10 O -0.344 6.344 11 C 0.481 3.519 12 O -0.529 6.529 13 C -0.103 4.103 14 H 0.160 0.840 15 C -0.105 4.105 16 C 0.154 3.846 17 O -0.556 6.556 18 C -0.092 4.092 19 C -0.105 4.105 20 C -0.102 4.102 21 C -0.115 4.115 22 C -0.049 4.049 23 Cl -0.081 7.081 24 C -0.104 4.104 25 C -0.134 4.134 26 C -0.003 4.003 27 C -0.119 4.119 28 Br -0.017 7.017 29 C -0.005 4.005 30 C -0.227 4.227 31 C 0.426 3.574 32 O -0.484 6.484 33 H 0.403 0.597 34 H 0.075 0.925 35 H -0.261 1.261 36 H -0.265 1.265 37 H 0.219 0.781 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.394 0.606 43 H 0.162 0.838 44 H 0.161 0.839 45 H 0.142 0.858 46 H 0.133 0.867 47 H 0.096 0.904 48 H 0.116 0.884 49 H 0.184 0.816 50 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.981 0.279 -1.098 1.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.377 6.377 2 C -0.178 4.178 3 Si 0.678 3.322 4 C -0.295 4.295 5 C 0.083 3.917 6 O -0.110 6.110 7 C 0.113 3.887 8 C -0.100 4.100 9 C 0.043 3.957 10 O -0.261 6.261 11 C 0.325 3.675 12 O -0.418 6.418 13 C -0.121 4.121 14 H 0.178 0.822 15 C -0.143 4.143 16 C 0.113 3.887 17 O -0.364 6.364 18 C -0.093 4.093 19 C -0.122 4.122 20 C -0.119 4.119 21 C -0.134 4.134 22 C -0.075 4.075 23 Cl -0.052 7.052 24 C -0.123 4.123 25 C -0.171 4.171 26 C -0.022 4.022 27 C -0.199 4.199 28 Br 0.069 6.931 29 C -0.025 4.025 30 C -0.230 4.230 31 C 0.311 3.689 32 O -0.366 6.366 33 H 0.254 0.746 34 H 0.093 0.907 35 H -0.187 1.187 36 H -0.191 1.191 37 H 0.234 0.766 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.245 0.755 43 H 0.179 0.821 44 H 0.179 0.821 45 H 0.160 0.840 46 H 0.151 0.849 47 H 0.114 0.886 48 H 0.135 0.865 49 H 0.201 0.799 50 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.687 0.487 -0.503 1.827 hybrid contribution -0.258 -0.513 0.191 0.605 sum 1.429 -0.026 -0.312 1.463 Atomic orbital electron populations 1.86446 1.17464 1.82833 1.50949 1.24779 0.86019 1.12162 0.94888 0.93068 0.78511 0.73931 0.86664 1.21274 1.11005 0.96043 1.01151 1.24101 0.88249 0.98065 0.81250 1.83130 1.68617 1.21225 1.38021 1.19005 0.95652 0.80222 0.93819 1.18836 1.03815 0.94291 0.93025 1.21527 1.00138 0.90824 0.83178 1.86394 1.69695 1.41996 1.28005 1.23811 0.73531 0.86960 0.83207 1.90720 1.53699 1.17581 1.79752 1.22539 1.00891 1.00630 0.88073 0.82245 1.23085 1.01193 0.99321 0.90676 1.21042 0.93076 0.89168 0.85450 1.86574 1.75229 1.38277 1.36336 1.19836 0.99184 0.95451 0.94798 1.21547 0.98465 0.91685 1.00544 1.21493 0.95371 0.99598 0.95479 1.21420 1.00047 0.97291 0.94597 1.21095 0.99670 0.97175 0.89563 1.98395 1.76068 1.98711 1.31997 1.20911 0.96610 0.97514 0.97272 1.23769 0.96246 1.05383 0.91728 1.21283 0.91791 0.90470 0.98639 1.21885 1.06888 0.93258 0.97823 1.96850 1.97449 1.02644 1.96184 1.21146 0.92872 0.92886 0.95626 1.20703 1.08289 0.95606 0.98404 1.18673 0.76574 0.88786 0.84861 1.90722 1.36584 1.67321 1.41980 0.74577 0.90665 1.18724 1.19062 0.76593 0.88280 0.88501 0.89166 0.89072 0.75528 0.82060 0.82134 0.83993 0.84878 0.88598 0.86540 0.79925 0.83261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -1.64 12.86 -148.98 -1.92 -3.55 16 2 C -0.07 -0.07 2.45 71.24 0.17 0.11 16 3 Si 0.78 -5.14 30.02 68.60 2.06 -3.08 16 4 C -0.29 -1.48 5.35 -19.78 -0.11 -1.59 16 5 C 0.15 0.03 9.99 66.97 0.67 0.70 16 6 O -0.21 -0.12 9.21 -2.76 -0.03 -0.15 16 7 C 0.16 0.35 6.74 22.98 0.15 0.51 16 8 C -0.10 0.11 5.89 -19.78 -0.12 -0.01 16 9 C 0.12 -0.28 5.38 71.24 0.38 0.10 16 10 O -0.34 1.18 8.68 -51.42 -0.45 0.73 16 11 C 0.48 -0.50 7.48 71.24 0.53 0.04 16 12 O -0.53 -3.31 15.66 21.98 0.34 -2.96 16 13 C -0.10 0.65 3.68 -11.01 -0.04 0.61 16 14 H 0.16 -1.88 6.31 -2.39 -0.02 -1.89 16 15 C -0.11 0.22 6.81 31.12 0.21 0.43 16 16 C 0.15 -0.67 1.78 -10.96 -0.02 -0.69 16 17 O -0.56 0.80 12.76 -148.98 -1.90 -1.10 16 18 C -0.09 0.44 5.13 -19.87 -0.10 0.34 16 19 C -0.10 0.86 8.26 22.27 0.18 1.04 16 20 C -0.10 0.73 10.05 22.27 0.22 0.96 16 21 C -0.11 0.38 9.83 22.29 0.22 0.60 16 22 C -0.05 0.01 6.32 22.33 0.14 0.15 16 23 Cl -0.08 -0.18 28.96 -2.72 -0.08 -0.26 16 24 C -0.10 0.14 9.19 22.29 0.20 0.34 16 25 C -0.13 1.01 6.62 31.18 0.21 1.22 16 26 C 0.00 0.01 9.10 22.31 0.20 0.21 16 27 C -0.12 -0.08 6.22 22.32 0.14 0.06 16 28 Br -0.02 0.01 33.69 -20.37 -0.69 -0.68 16 29 C -0.01 -0.02 9.40 22.45 0.21 0.19 16 30 C -0.23 -1.38 5.89 -20.01 -0.12 -1.50 16 31 C 0.43 4.37 6.98 25.67 0.18 4.55 16 32 O -0.48 -7.99 16.93 -5.06 -0.09 -8.08 16 33 H 0.40 -3.19 8.74 -74.06 -0.65 -3.83 16 34 H 0.08 0.08 7.96 -2.39 -0.02 0.06 16 35 H -0.26 0.92 6.91 99.48 0.69 1.61 16 36 H -0.27 0.89 7.11 99.48 0.71 1.60 16 37 H 0.22 -1.16 4.64 -2.91 -0.01 -1.18 16 38 H 0.10 -0.27 8.13 -2.39 -0.02 -0.29 16 39 H 0.10 -0.22 8.13 -2.39 -0.02 -0.24 16 40 H 0.09 -0.23 8.09 -2.39 -0.02 -0.25 16 41 H 0.09 0.25 7.45 -2.38 -0.02 0.24 16 42 H 0.39 -3.05 8.99 -74.06 -0.67 -3.72 16 43 H 0.16 -2.22 5.16 -2.91 -0.02 -2.23 16 44 H 0.16 -1.94 8.06 -2.91 -0.02 -1.97 16 45 H 0.14 -0.73 8.06 -2.91 -0.02 -0.75 16 46 H 0.13 -0.07 7.67 -2.91 -0.02 -0.09 16 47 H 0.10 -0.50 8.09 -2.39 -0.02 -0.52 16 48 H 0.12 -1.42 6.80 -2.39 -0.02 -1.43 16 49 H 0.18 -1.24 6.96 -2.91 -0.02 -1.26 16 50 H 0.15 0.78 7.81 -2.91 -0.02 0.76 16 Total: 0.00 -26.77 458.37 0.59 -26.17 By element: Atomic # 1 Polarization: -15.19 SS G_CDS: -0.21 Total: -15.39 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: 3.54 Total: 8.36 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: -4.03 Total: -15.11 kcal Atomic # 14 Polarization: -5.14 SS G_CDS: 2.06 Total: -3.08 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -0.08 Total: -0.26 kcal Atomic # 35 Polarization: 0.01 SS G_CDS: -0.69 Total: -0.68 kcal Total: -26.77 0.59 -26.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_17797546_484008.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.206 kcal (2) G-P(sol) polarization free energy of solvation -26.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds