Wall clock time and date at job start Sat Mar 6 2021 07:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47480 * 2 1 4 4 C 1.50693 * 109.47391 * 300.00296 * 3 2 1 5 5 O 1.20827 * 120.00131 * 239.99995 * 4 3 2 6 6 O 1.34230 * 119.99840 * 59.99599 * 4 3 2 7 7 C 1.45209 * 116.99767 * 179.97438 * 6 4 3 8 8 C 1.50695 * 109.47039 * 179.97438 * 7 6 4 9 9 C 1.38929 * 120.04215 * 180.02562 * 8 7 6 10 10 O 1.34885 * 120.98499 * 0.02962 * 9 8 7 11 11 C 1.33719 * 122.41003 * 180.02562 * 10 9 8 12 12 C 1.34532 * 122.85496 * 359.94963 * 11 10 9 13 13 C 1.50705 * 120.19765 * 180.02562 * 12 11 10 14 14 O 1.42904 * 109.47435 * 249.97788 * 13 12 11 15 15 Si 1.86303 * 109.47439 * 9.98119 * 13 12 11 16 16 C 1.41996 * 119.60297 * 0.02562 * 12 11 10 17 17 O 1.21910 * 121.41122 * 179.97438 * 16 12 11 18 18 C 1.40451 * 119.34280 * 180.02562 * 9 8 7 19 19 C 1.39347 * 120.23905 * 359.97438 * 18 9 8 20 20 C 1.37887 * 119.52284 * 0.02562 * 19 18 9 21 21 Br 1.89102 * 119.86215 * 180.02562 * 20 19 18 22 22 C 1.37875 * 120.04088 * 359.73257 * 8 7 6 23 23 C 1.53000 * 109.47079 * 179.97438 * 3 2 1 24 24 C 1.52998 * 109.47079 * 180.02562 * 23 3 2 25 25 C 1.52999 * 109.46788 * 60.00646 * 24 23 3 26 26 H 1.08997 * 109.47286 * 59.99783 * 25 24 23 27 27 O 1.42903 * 109.47256 * 180.02562 * 25 24 23 28 28 C 1.53003 * 109.47142 * 299.99504 * 25 24 23 29 29 C 1.52999 * 109.46788 * 60.00304 * 3 2 1 30 30 H 1.09005 * 109.47240 * 59.99575 * 1 2 3 31 31 H 1.08997 * 109.47549 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46989 * 299.99774 * 1 2 3 33 33 H 1.09009 * 109.46962 * 240.00183 * 2 1 3 34 34 H 1.09005 * 109.47240 * 120.00424 * 2 1 3 35 35 H 1.08993 * 109.47065 * 300.00659 * 7 6 4 36 36 H 1.09010 * 109.46920 * 60.00524 * 7 6 4 37 37 H 1.08004 * 118.56796 * 179.97438 * 11 10 9 38 38 H 1.09002 * 109.46777 * 129.97744 * 13 12 11 39 39 H 0.96696 * 113.99772 * 59.99724 * 14 13 12 40 40 H 1.48498 * 110.00197 * 180.02562 * 15 13 12 41 41 H 1.48501 * 109.99613 * 301.31728 * 15 13 12 42 42 H 1.07999 * 120.23950 * 180.02562 * 19 18 9 43 43 H 1.07998 * 119.64804 * 359.97101 * 22 8 7 44 44 H 1.09009 * 109.46884 * 60.00476 * 23 3 2 45 45 H 1.08997 * 109.47412 * 300.00472 * 23 3 2 46 46 H 1.08997 * 109.47384 * 300.00489 * 24 23 3 47 47 H 1.08997 * 109.47329 * 180.02562 * 24 23 3 48 48 H 0.96700 * 114.00311 * 180.02562 * 27 25 24 49 49 H 1.08999 * 109.47269 * 180.02562 * 28 25 24 50 50 H 1.08997 * 109.47258 * 300.00296 * 28 25 24 51 51 H 1.08999 * 109.47350 * 299.99838 * 29 3 2 52 52 H 1.08997 * 109.47286 * 59.99783 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5378 2.1529 -1.2303 5 8 2.3229 2.6121 -2.0257 6 8 0.2181 2.2756 -1.4427 7 6 -0.1936 2.9725 -2.6483 8 6 -1.6985 3.0113 -2.7170 9 6 -2.3301 3.6300 -3.7886 10 8 -1.6159 4.2021 -4.7796 11 6 -2.1940 4.8053 -5.8235 12 6 -3.5286 4.8897 -5.9706 13 6 -4.1165 5.5835 -7.1723 14 8 -4.7275 6.8089 -6.7634 15 14 -2.7658 5.9438 -8.4039 16 6 -4.3800 4.3211 -4.9867 17 8 -5.5936 4.3788 -5.0866 18 6 -3.7335 3.6581 -3.8375 19 6 -4.4830 3.0702 -2.8205 20 6 -3.8370 2.4612 -1.7655 21 35 -4.8448 1.6598 -0.3805 22 6 -2.4503 2.4277 -1.7194 23 6 3.5701 1.4423 0.0006 24 6 4.0801 2.8848 0.0013 25 6 3.5697 3.6056 1.2506 26 1 3.9327 3.0914 2.1405 27 8 4.0456 4.9530 1.2510 28 6 2.0397 3.6057 1.2501 29 6 1.5301 2.1636 1.2493 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8901 34 1 1.8933 -0.5139 0.8900 35 1 0.1961 3.9902 -2.6307 36 1 0.1961 2.4491 -3.5215 37 1 -1.5620 5.2436 -6.5818 38 1 -4.8659 4.9398 -7.6330 39 1 -4.1179 7.4316 -6.3443 40 1 -3.3325 6.6285 -9.5935 41 1 -1.7217 6.7945 -7.7782 42 1 -5.5622 3.0915 -2.8583 43 1 -1.9548 1.9434 -0.8910 44 1 3.9337 0.9284 -0.8892 45 1 3.9330 0.9286 0.8908 46 1 3.7172 3.3990 -0.8886 47 1 5.1701 2.8848 0.0013 48 1 3.7604 5.4707 2.0163 49 1 1.6761 4.1196 2.1399 50 1 1.6768 4.1199 0.3602 51 1 0.4401 2.1637 1.2494 52 1 1.8934 1.6497 2.1392 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_17799158_484008.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 07:29:26 Heat of formation + Delta-G solvation = -176.679804 kcal Electronic energy + Delta-G solvation = -40287.505904 eV Core-core repulsion = 35038.315162 eV Total energy + Delta-G solvation = -5249.190742 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 467.080 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -43.36012 -42.40000 -40.19808 -40.14059 -39.46772 -38.05031 -37.68364 -37.24336 -34.67631 -33.95413 -33.61664 -33.13555 -31.86788 -30.73221 -29.51867 -28.34889 -27.49711 -25.99677 -24.95236 -24.44081 -24.27213 -23.50178 -22.39818 -21.59710 -21.02976 -20.50581 -19.54714 -19.03505 -18.32263 -18.23816 -18.09825 -17.73231 -17.67366 -17.17127 -16.80590 -16.50395 -16.28694 -16.18744 -16.00482 -15.70322 -15.55393 -15.43779 -15.31207 -15.16273 -14.73989 -14.59005 -14.41698 -14.29700 -14.15594 -13.96818 -13.95056 -13.90198 -13.45927 -13.30579 -13.18175 -12.85741 -12.73026 -12.55988 -12.45849 -12.35319 -12.13730 -11.98910 -11.86418 -11.76929 -11.56092 -11.52165 -11.46070 -11.34269 -11.26252 -10.95911 -10.71758 -10.65624 -10.57594 -10.42733 -9.59339 -5.00837 -0.85908 -0.71067 0.02676 0.33661 0.96454 1.14709 1.15141 1.39443 1.39610 1.45969 1.94400 2.26798 2.67255 2.85005 3.17150 3.24661 3.28712 3.35944 3.40457 3.54795 3.64443 3.68801 3.76444 3.81512 3.87077 3.96469 3.99466 4.09692 4.10540 4.14033 4.24992 4.28136 4.30267 4.35387 4.45952 4.48730 4.57417 4.60328 4.62797 4.64729 4.71537 4.77867 4.82471 4.90607 4.98895 5.02983 5.07154 5.12316 5.13826 5.15896 5.23125 5.24825 5.35668 5.53448 5.61817 5.74264 6.31192 6.46481 6.68150 6.88036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.111 4.111 3 C -0.045 4.045 4 C 0.477 3.523 5 O -0.523 6.523 6 O -0.341 6.341 7 C 0.112 3.888 8 C -0.096 4.096 9 C 0.164 3.836 10 O -0.203 6.203 11 C 0.170 3.830 12 C -0.333 4.333 13 C -0.071 4.071 14 O -0.549 6.549 15 Si 0.783 3.217 16 C 0.425 3.575 17 O -0.494 6.494 18 C -0.225 4.225 19 C -0.009 4.009 20 C -0.119 4.119 21 Br -0.023 7.023 22 C -0.009 4.009 23 C -0.094 4.094 24 C -0.132 4.132 25 C 0.101 3.899 26 H 0.073 0.927 27 O -0.593 6.593 28 C -0.154 4.154 29 C -0.106 4.106 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.240 0.760 38 H 0.105 0.895 39 H 0.386 0.614 40 H -0.299 1.299 41 H -0.241 1.241 42 H 0.145 0.855 43 H 0.177 0.823 44 H 0.071 0.929 45 H 0.103 0.897 46 H 0.066 0.934 47 H 0.062 0.938 48 H 0.393 0.607 49 H 0.088 0.912 50 H 0.044 0.956 51 H 0.093 0.907 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.330 -4.173 3.506 8.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.148 4.148 3 C -0.046 4.046 4 C 0.321 3.679 5 O -0.411 6.411 6 O -0.258 6.258 7 C 0.038 3.962 8 C -0.097 4.097 9 C 0.119 3.881 10 O -0.106 6.106 11 C 0.104 3.896 12 C -0.335 4.335 13 C -0.177 4.177 14 O -0.358 6.358 15 Si 0.683 3.317 16 C 0.311 3.689 17 O -0.377 6.377 18 C -0.228 4.228 19 C -0.029 4.029 20 C -0.199 4.199 21 Br 0.063 6.937 22 C -0.028 4.028 23 C -0.131 4.131 24 C -0.169 4.169 25 C 0.043 3.957 26 H 0.091 0.909 27 O -0.401 6.401 28 C -0.191 4.191 29 C -0.143 4.143 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.119 0.881 35 H 0.112 0.888 36 H 0.119 0.881 37 H 0.256 0.744 38 H 0.123 0.877 39 H 0.235 0.765 40 H -0.227 1.227 41 H -0.166 1.166 42 H 0.163 0.837 43 H 0.194 0.806 44 H 0.090 0.910 45 H 0.121 0.879 46 H 0.085 0.915 47 H 0.081 0.919 48 H 0.242 0.758 49 H 0.106 0.894 50 H 0.063 0.937 51 H 0.111 0.889 52 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.935 -4.191 2.528 7.693 hybrid contribution -1.072 1.615 0.479 1.997 sum 4.863 -2.576 3.007 6.271 Atomic orbital electron populations 1.22181 0.94534 1.02594 1.03547 1.21610 0.97261 0.91695 1.04268 1.20868 0.96566 0.96783 0.90346 1.24136 0.79747 0.76407 0.87608 1.90650 1.56804 1.46407 1.47285 1.86539 1.26248 1.69701 1.43265 1.21551 0.88783 0.98758 0.87068 1.18820 0.95168 1.02195 0.93525 1.18886 0.88354 0.93311 0.87594 1.83175 1.38828 1.60564 1.27990 1.24500 0.93772 0.85847 0.85452 1.21875 0.94614 1.13056 1.03991 1.25215 1.07961 0.86414 0.98149 1.86659 1.40349 1.27981 1.80765 0.94456 0.75173 0.87436 0.74615 1.18752 0.88881 0.76968 0.84313 1.90749 1.16714 1.53225 1.77010 1.20726 0.92937 1.08351 1.00745 1.21124 1.01171 0.90795 0.89831 1.21857 0.95102 1.05842 0.97102 1.96845 1.71440 1.80101 1.45322 1.21281 0.90614 0.93303 0.97592 1.21480 0.91374 0.96002 1.04291 1.21733 1.00967 0.96044 0.98175 1.21951 0.92741 0.82600 0.98405 0.90926 1.86507 1.77477 1.24913 1.51209 1.22310 0.96055 0.98086 1.02695 1.21715 1.02529 0.93898 0.96206 0.91459 0.91974 0.91024 0.91641 0.88143 0.88802 0.88107 0.74421 0.87656 0.76523 1.22656 1.16642 0.83718 0.80586 0.91043 0.87852 0.91500 0.91938 0.75785 0.89375 0.93679 0.88867 0.87732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 1.34 9.04 71.98 0.65 1.99 16 2 C -0.11 0.87 4.98 30.59 0.15 1.02 16 3 C -0.04 0.23 0.52 -52.93 -0.03 0.20 16 4 C 0.48 -0.17 4.98 71.23 0.35 0.19 16 5 O -0.52 -3.09 13.41 21.96 0.29 -2.80 16 6 O -0.34 1.05 5.60 -51.41 -0.29 0.77 16 7 C 0.11 -0.37 5.38 71.23 0.38 0.01 16 8 C -0.10 0.24 5.89 -19.79 -0.12 0.12 16 9 C 0.16 -0.11 6.74 22.97 0.15 0.05 16 10 O -0.20 0.88 9.21 -2.79 -0.03 0.86 16 11 C 0.17 -1.11 9.99 66.97 0.67 -0.44 16 12 C -0.33 -0.14 5.32 -19.78 -0.11 -0.24 16 13 C -0.07 -0.06 2.46 71.24 0.17 0.11 16 14 O -0.55 -3.11 12.88 -148.98 -1.92 -5.03 16 15 Si 0.78 -5.12 30.06 68.60 2.06 -3.05 16 16 C 0.42 3.27 6.98 25.67 0.18 3.45 16 17 O -0.49 -7.93 16.93 -5.02 -0.09 -8.01 16 18 C -0.22 -0.88 5.89 -20.01 -0.12 -1.00 16 19 C -0.01 -0.03 9.40 22.45 0.21 0.18 16 20 C -0.12 -0.06 6.22 22.32 0.14 0.08 16 21 Br -0.02 -0.01 33.69 -20.37 -0.69 -0.69 16 22 C -0.01 0.02 9.10 22.32 0.20 0.22 16 23 C -0.09 0.34 4.37 30.59 0.13 0.47 16 24 C -0.13 -0.22 5.28 30.59 0.16 -0.06 16 25 C 0.10 -0.14 3.47 30.59 0.11 -0.03 16 26 H 0.07 -0.35 8.14 -2.39 -0.02 -0.37 16 27 O -0.59 -1.40 13.32 -148.98 -1.98 -3.38 16 28 C -0.15 0.65 5.32 30.58 0.16 0.81 16 29 C -0.11 0.82 4.31 30.58 0.13 0.95 16 30 H 0.07 -0.41 4.48 -2.38 -0.01 -0.42 16 31 H 0.06 -0.47 8.14 -2.39 -0.02 -0.49 16 32 H 0.07 -0.67 6.43 -2.39 -0.02 -0.69 16 33 H 0.06 -0.42 8.14 -2.38 -0.02 -0.44 16 34 H 0.10 -1.09 8.14 -2.38 -0.02 -1.11 16 35 H 0.09 -0.28 8.13 -2.39 -0.02 -0.30 16 36 H 0.10 -0.41 8.13 -2.38 -0.02 -0.43 16 37 H 0.24 -3.46 4.61 -2.91 -0.01 -3.47 16 38 H 0.11 0.39 7.96 -2.39 -0.02 0.37 16 39 H 0.39 -0.98 8.70 -74.06 -0.64 -1.62 16 40 H -0.30 -0.82 7.11 99.48 0.71 -0.11 16 41 H -0.24 1.91 6.86 99.48 0.68 2.60 16 42 H 0.15 0.77 7.81 -2.91 -0.02 0.75 16 43 H 0.18 -1.00 6.13 -2.91 -0.02 -1.02 16 44 H 0.07 -0.12 8.10 -2.38 -0.02 -0.14 16 45 H 0.10 -0.82 8.14 -2.39 -0.02 -0.84 16 46 H 0.07 0.51 5.52 -2.39 -0.01 0.49 16 47 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 48 H 0.39 -2.40 9.08 -74.06 -0.67 -3.07 16 49 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 50 H 0.04 0.02 7.22 -2.39 -0.02 0.00 16 51 H 0.09 -0.83 6.40 -2.39 -0.02 -0.85 16 52 H 0.10 -1.17 8.14 -2.39 -0.02 -1.19 16 Total: 0.00 -26.76 428.54 0.68 -26.08 By element: Atomic # 1 Polarization: -12.55 SS G_CDS: -0.29 Total: -12.83 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: 3.60 Total: 8.10 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -4.01 Total: -17.60 kcal Atomic # 14 Polarization: -5.12 SS G_CDS: 2.06 Total: -3.05 kcal Atomic # 35 Polarization: -0.01 SS G_CDS: -0.69 Total: -0.69 kcal Total: -26.76 0.68 -26.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_17799158_484008.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.600 kcal (2) G-P(sol) polarization free energy of solvation -26.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds