Wall clock time and date at job start Sat Mar 6 2021 07:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.53006 * 109.47000 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.46741 * 54.99859 * 4 3 2 6 6 C 1.52999 * 109.47184 * 175.00261 * 4 3 2 7 7 C 1.53006 * 109.46811 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47021 * 299.99780 * 7 6 4 9 9 H 1.08992 * 109.47518 * 300.00087 * 8 7 6 10 10 C 1.50706 * 109.46952 * 179.97438 * 8 7 6 11 11 O 1.20827 * 119.99932 * 0.02562 * 10 8 7 12 12 O 1.34221 * 120.00030 * 179.97438 * 10 8 7 13 13 C 1.45198 * 117.00107 * 180.02562 * 12 10 8 14 14 C 1.50701 * 109.47211 * 180.02562 * 13 12 10 15 15 C 1.38941 * 120.03796 * 179.97438 * 14 13 12 16 16 O 1.34881 * 120.98664 * 0.02689 * 15 14 13 17 17 C 1.33717 * 122.40575 * 180.02562 * 16 15 14 18 18 C 1.34536 * 122.85926 * 359.94768 * 17 16 15 19 19 C 1.50703 * 120.20393 * 180.02562 * 18 17 16 20 20 O 1.42899 * 109.47322 * 249.98610 * 19 18 17 21 21 Si 1.86302 * 109.46781 * 9.98288 * 19 18 17 22 22 C 1.42003 * 119.59666 * 0.03032 * 18 17 16 23 23 O 1.21915 * 121.40599 * 179.97438 * 22 18 17 24 24 C 1.40457 * 119.33655 * 180.02562 * 15 14 13 25 25 C 1.39351 * 120.23610 * 359.97438 * 24 15 14 26 26 C 1.37887 * 119.52603 * 359.97438 * 25 24 15 27 27 Br 1.89104 * 119.85857 * 180.02562 * 26 25 24 28 28 C 1.37866 * 120.04283 * 359.72588 * 14 13 12 29 29 C 1.52999 * 109.47148 * 60.00427 * 8 7 6 30 30 C 1.52996 * 109.47179 * 299.99730 * 29 8 7 31 31 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 32 32 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 33 33 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 34 34 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 35 35 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 36 36 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 37 37 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 38 38 H 1.08997 * 109.46828 * 299.99994 * 6 4 3 39 39 H 1.09000 * 109.47001 * 60.00563 * 6 4 3 40 40 H 1.08992 * 109.47046 * 60.00157 * 7 6 4 41 41 H 1.08995 * 109.46750 * 179.97438 * 7 6 4 42 42 H 1.09000 * 109.47118 * 300.00108 * 13 12 10 43 43 H 1.09000 * 109.47203 * 60.00322 * 13 12 10 44 44 H 1.07995 * 118.57054 * 179.97438 * 17 16 15 45 45 H 1.08998 * 109.47152 * 129.98265 * 19 18 17 46 46 H 0.96698 * 114.00373 * 59.99197 * 20 19 18 47 47 H 1.48498 * 109.99837 * 180.02562 * 21 19 18 48 48 H 1.48506 * 110.00037 * 301.31931 * 21 19 18 49 49 H 1.08004 * 120.23200 * 180.02562 * 25 24 15 50 50 H 1.08003 * 119.64444 * 359.97438 * 28 14 13 51 51 H 1.09005 * 109.47423 * 59.99315 * 29 8 7 52 52 H 1.09001 * 109.47273 * 179.97438 * 29 8 7 53 53 H 1.09001 * 109.47244 * 300.00397 * 30 29 8 54 54 H 1.08998 * 109.47611 * 180.02562 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9329 0.8533 -0.8427 6 6 4.0799 2.8797 -0.1263 7 6 5.6099 2.8796 -0.1276 8 6 6.1210 2.2696 1.1791 9 1 5.7584 2.8587 2.0214 10 6 7.6280 2.2690 1.1776 11 8 8.2314 2.7115 0.2289 12 8 8.3000 1.7778 2.2305 13 6 9.7499 1.8098 2.1604 14 6 10.3270 1.2207 3.4218 15 6 11.7045 1.1427 3.5862 16 8 12.5443 1.5888 2.6296 17 6 13.8739 1.5272 2.7578 18 6 14.4795 1.0188 3.8462 19 6 15.9838 0.9793 3.9278 20 8 16.4305 -0.3749 3.8355 21 14 16.7079 1.9690 2.5254 22 6 13.6927 0.5194 4.9177 23 8 14.2069 0.0512 5.9190 24 6 12.2264 0.5905 4.7675 25 6 11.3694 0.1266 5.7636 26 6 10.0054 0.2140 5.5814 27 35 8.8338 -0.4120 6.9273 28 6 9.4888 0.7632 4.4162 29 6 5.6111 0.8325 1.3048 30 6 4.0811 0.8325 1.3061 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5139 0.8899 35 1 1.8934 -0.5138 -0.8900 36 1 1.6767 1.9564 -0.8899 37 1 1.6766 1.9563 0.8900 38 1 3.7161 3.3141 -1.0574 39 1 3.7169 3.4689 0.7158 40 1 5.9725 2.2905 -0.9699 41 1 5.9731 3.9033 -0.2176 42 1 10.0851 1.2280 1.3018 43 1 10.0859 2.8412 2.0540 44 1 14.4883 1.9023 1.9527 45 1 16.3074 1.4047 4.8778 46 1 16.1776 -0.8174 3.0137 47 1 18.1910 1.9375 2.5942 48 1 16.2485 1.4185 1.2249 49 1 11.7708 -0.2977 6.6721 50 1 8.4188 0.8301 4.2857 51 1 5.9737 0.2433 0.4624 52 1 5.9755 0.3978 2.2355 53 1 3.7185 1.4217 2.1484 54 1 3.7178 -0.1912 1.3960 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_17844480_484008.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 07:47:47 Heat of formation + Delta-G solvation = -147.090052 kcal Electronic energy + Delta-G solvation = -37915.725032 eV Core-core repulsion = 32830.961971 eV Total energy + Delta-G solvation = -5084.763061 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 465.096 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -43.35123 -41.87467 -40.18117 -40.03846 -39.51209 -38.05085 -37.65996 -35.78233 -34.65408 -33.70162 -33.17432 -32.21553 -31.62454 -30.73033 -28.56111 -27.49228 -27.29508 -25.88850 -24.48488 -24.21088 -23.58975 -22.54079 -22.13614 -21.20421 -20.75434 -20.61292 -19.58164 -19.11435 -18.52770 -17.97758 -17.82152 -17.57115 -17.48546 -16.78810 -16.47276 -16.27902 -16.22898 -16.05539 -15.79540 -15.69015 -15.32371 -15.30246 -15.09690 -14.98805 -14.80462 -14.51576 -14.28304 -14.16789 -14.05599 -13.92423 -13.75353 -13.32832 -13.30117 -13.13214 -12.91594 -12.80925 -12.57173 -12.53053 -12.27155 -12.12149 -12.00679 -11.89709 -11.85801 -11.81561 -11.57219 -11.51944 -11.45060 -11.34142 -11.31219 -10.95883 -10.78749 -10.71488 -10.57140 -10.42811 -9.59199 -5.00142 -0.85498 -0.70789 0.03114 0.33774 0.96717 1.11670 1.15715 1.39952 1.40087 1.46431 1.95265 2.27089 2.67771 2.85680 3.18462 3.29464 3.36750 3.47522 3.64350 3.65652 3.71328 3.74011 3.83017 3.92530 3.96859 4.07585 4.10325 4.12286 4.15564 4.28400 4.30142 4.32071 4.34773 4.42697 4.52294 4.56455 4.60347 4.60541 4.63019 4.65385 4.69500 4.78333 4.84482 4.94203 5.00131 5.02353 5.05354 5.11794 5.15899 5.18146 5.25087 5.27319 5.33824 5.37710 5.38274 5.46372 5.57595 5.65616 5.74454 6.31599 6.47113 6.63899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.126 4.126 3 C -0.112 4.112 4 C -0.089 4.089 5 H 0.064 0.936 6 C -0.110 4.110 7 C -0.102 4.102 8 C -0.074 4.074 9 H 0.130 0.870 10 C 0.472 3.528 11 O -0.531 6.531 12 O -0.351 6.351 13 C 0.116 3.884 14 C -0.097 4.097 15 C 0.165 3.835 16 O -0.202 6.202 17 C 0.171 3.829 18 C -0.334 4.334 19 C -0.072 4.072 20 O -0.550 6.550 21 Si 0.783 3.217 22 C 0.425 3.575 23 O -0.495 6.495 24 C -0.226 4.226 25 C -0.009 4.009 26 C -0.120 4.120 27 Br -0.024 7.024 28 C -0.007 4.007 29 C -0.108 4.108 30 C -0.111 4.111 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.099 0.901 43 H 0.103 0.897 44 H 0.242 0.758 45 H 0.105 0.895 46 H 0.386 0.614 47 H -0.299 1.299 48 H -0.239 1.239 49 H 0.145 0.855 50 H 0.177 0.823 51 H 0.061 0.939 52 H 0.086 0.914 53 H 0.075 0.925 54 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.413 4.139 -4.898 8.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.164 4.164 3 C -0.150 4.150 4 C -0.107 4.107 5 H 0.082 0.918 6 C -0.147 4.147 7 C -0.139 4.139 8 C -0.093 4.093 9 H 0.147 0.853 10 C 0.316 3.684 11 O -0.420 6.420 12 O -0.267 6.267 13 C 0.043 3.957 14 C -0.098 4.098 15 C 0.120 3.880 16 O -0.104 6.104 17 C 0.105 3.895 18 C -0.336 4.336 19 C -0.178 4.178 20 O -0.358 6.358 21 Si 0.683 3.317 22 C 0.311 3.689 23 O -0.378 6.378 24 C -0.228 4.228 25 C -0.029 4.029 26 C -0.200 4.200 27 Br 0.061 6.939 28 C -0.026 4.026 29 C -0.146 4.146 30 C -0.148 4.148 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.117 0.883 43 H 0.121 0.879 44 H 0.257 0.743 45 H 0.123 0.877 46 H 0.235 0.765 47 H -0.227 1.227 48 H -0.165 1.165 49 H 0.162 0.838 50 H 0.194 0.806 51 H 0.080 0.920 52 H 0.105 0.895 53 H 0.093 0.907 54 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.768 3.986 -4.447 7.642 hybrid contribution 0.751 -1.378 0.061 1.571 sum -4.017 2.608 -4.386 6.494 Atomic orbital electron populations 1.21802 0.96234 1.01565 1.01739 1.21586 0.95554 0.97173 1.02075 1.21623 0.94614 0.96630 1.02123 1.21210 0.95049 0.96197 0.98281 0.91761 1.21572 0.93436 0.96839 1.02867 1.21413 0.96307 1.01035 0.95182 1.21252 0.84422 1.01155 1.02424 0.85263 1.24285 0.92339 0.72684 0.79060 1.90697 1.71136 1.44094 1.36040 1.86405 1.21097 1.75367 1.43873 1.21561 0.76783 1.02906 0.94466 1.18843 0.88235 1.04845 0.97925 1.18873 0.88897 0.93982 0.86291 1.83173 1.16572 1.69121 1.41562 1.24513 0.79467 0.88302 0.97181 1.21880 0.99797 1.13692 0.98260 1.25228 0.89602 0.89017 1.13963 1.86658 1.78903 1.25463 1.44786 0.94463 0.78589 0.85662 0.72947 1.18761 0.87166 0.76267 0.86732 1.90751 1.75945 1.39251 1.31845 1.20730 0.96666 1.08829 0.96619 1.21122 0.91102 0.92706 0.97984 1.21858 0.93633 1.07420 0.97095 1.96845 1.60807 1.87141 1.49078 1.21231 1.02255 0.90497 0.88645 1.21541 0.96900 0.92737 1.03388 1.21625 0.93562 1.01967 0.97677 0.92641 0.93051 0.92957 0.91401 0.92520 0.92326 0.91584 0.91413 0.90728 0.92231 0.91589 0.88330 0.87934 0.74286 0.87720 0.76512 1.22677 1.16472 0.83753 0.80600 0.92037 0.89542 0.90655 0.90794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.43 9.91 71.98 0.71 1.14 16 2 C -0.13 0.48 5.69 30.60 0.17 0.65 16 3 C -0.11 0.53 4.68 30.60 0.14 0.67 16 4 C -0.09 0.48 2.19 -10.79 -0.02 0.46 16 5 H 0.06 -0.23 8.14 -2.39 -0.02 -0.25 16 6 C -0.11 0.59 5.20 30.60 0.16 0.74 16 7 C -0.10 0.33 4.49 30.60 0.14 0.46 16 8 C -0.07 0.37 2.63 -11.54 -0.03 0.34 16 9 H 0.13 -1.09 8.14 -2.39 -0.02 -1.11 16 10 C 0.47 -0.34 7.25 71.24 0.52 0.18 16 11 O -0.53 -2.92 15.73 21.96 0.35 -2.57 16 12 O -0.35 1.06 8.58 -51.33 -0.44 0.62 16 13 C 0.12 -0.44 5.38 71.24 0.38 -0.06 16 14 C -0.10 0.25 5.89 -19.78 -0.12 0.13 16 15 C 0.17 -0.15 6.74 22.98 0.15 0.01 16 16 O -0.20 1.00 9.21 -2.73 -0.03 0.97 16 17 C 0.17 -1.20 9.99 66.97 0.67 -0.53 16 18 C -0.33 -0.06 5.32 -19.78 -0.11 -0.17 16 19 C -0.07 -0.05 2.46 71.24 0.17 0.12 16 20 O -0.55 -3.05 12.88 -148.98 -1.92 -4.97 16 21 Si 0.78 -5.40 30.06 68.60 2.06 -3.34 16 22 C 0.42 3.25 6.98 25.67 0.18 3.43 16 23 O -0.49 -7.99 16.93 -5.04 -0.09 -8.07 16 24 C -0.23 -0.88 5.89 -20.01 -0.12 -1.00 16 25 C -0.01 -0.04 9.40 22.45 0.21 0.17 16 26 C -0.12 -0.11 6.22 22.32 0.14 0.03 16 27 Br -0.02 -0.02 33.69 -20.37 -0.69 -0.71 16 28 C -0.01 0.02 9.10 22.31 0.20 0.22 16 29 C -0.11 0.69 5.13 30.59 0.16 0.85 16 30 C -0.11 0.77 4.96 30.59 0.15 0.92 16 31 H 0.05 -0.16 8.14 -2.39 -0.02 -0.18 16 32 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 33 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 34 H 0.07 -0.30 6.57 -2.39 -0.02 -0.32 16 35 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 36 H 0.06 -0.21 8.14 -2.39 -0.02 -0.23 16 37 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 38 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 39 H 0.07 -0.49 8.14 -2.39 -0.02 -0.51 16 40 H 0.06 -0.02 8.10 -2.39 -0.02 -0.04 16 41 H 0.07 -0.10 8.10 -2.39 -0.02 -0.12 16 42 H 0.10 -0.43 8.13 -2.39 -0.02 -0.45 16 43 H 0.10 -0.50 8.13 -2.39 -0.02 -0.51 16 44 H 0.24 -3.65 4.61 -2.91 -0.01 -3.66 16 45 H 0.10 0.38 7.96 -2.39 -0.02 0.36 16 46 H 0.39 -1.06 8.70 -74.06 -0.64 -1.71 16 47 H -0.30 -0.73 7.11 99.48 0.71 -0.03 16 48 H -0.24 2.04 6.86 99.48 0.68 2.72 16 49 H 0.14 0.81 7.81 -2.91 -0.02 0.79 16 50 H 0.18 -0.95 6.96 -2.91 -0.02 -0.97 16 51 H 0.06 -0.28 8.14 -2.38 -0.02 -0.30 16 52 H 0.09 -0.67 8.11 -2.39 -0.02 -0.69 16 53 H 0.07 -0.60 8.14 -2.39 -0.02 -0.62 16 54 H 0.07 -0.50 6.57 -2.39 -0.02 -0.52 16 Total: 0.00 -22.19 454.01 3.43 -18.76 By element: Atomic # 1 Polarization: -9.78 SS G_CDS: 0.31 Total: -9.47 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: 3.87 Total: 8.78 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: -2.12 Total: -14.03 kcal Atomic # 14 Polarization: -5.40 SS G_CDS: 2.06 Total: -3.34 kcal Atomic # 35 Polarization: -0.02 SS G_CDS: -0.69 Total: -0.71 kcal Total: -22.19 3.43 -18.76 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_17844480_484008.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.331 kcal (2) G-P(sol) polarization free energy of solvation -22.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds