Wall clock time and date at job start Sat Mar 6 2021 07:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86304 * 109.93107 * 2 1 4 4 C 1.87380 * 109.94896 * 121.17608 * 2 1 3 5 5 C 1.53716 * 107.28073 * 73.84640 * 4 2 1 6 6 C 1.52523 * 109.64415 * 59.12685 * 5 4 2 7 7 C 1.52520 * 111.65421 * 283.00921 * 6 5 4 8 8 C 1.50701 * 109.44205 * 197.04279 * 7 6 5 9 9 O 1.20833 * 119.99854 * 239.93330 * 8 7 6 10 10 O 1.34229 * 120.00236 * 59.92805 * 8 7 6 11 11 C 1.45200 * 116.99914 * 180.02562 * 10 8 7 12 12 C 1.50698 * 109.46850 * 180.02562 * 11 10 8 13 13 C 1.37828 * 120.04408 * 0.02562 * 12 11 10 14 14 C 1.38833 * 120.70799 * 179.97438 * 13 12 11 15 15 Br 1.89096 * 119.86424 * 179.97438 * 14 13 12 16 16 C 1.37848 * 120.27240 * 359.97438 * 14 13 12 17 17 C 1.39385 * 119.52708 * 0.03824 * 16 14 13 18 18 C 1.38979 * 120.04025 * 179.97438 * 12 11 10 19 19 O 1.34876 * 120.98438 * 0.02562 * 18 12 11 20 20 C 1.33714 * 122.41461 * 179.71665 * 19 18 12 21 21 C 1.34542 * 122.84717 * 0.58529 * 20 19 18 22 22 C 1.50701 * 120.20411 * 179.72609 * 21 20 19 23 23 O 1.42895 * 109.47079 * 249.72686 * 22 21 20 24 24 Si 1.86301 * 109.47149 * 9.72181 * 22 21 20 25 25 H 1.48506 * 109.47302 * 59.99966 * 24 22 21 26 26 H 1.48503 * 109.47334 * 300.00099 * 24 22 21 27 27 H 1.48500 * 109.47376 * 180.02562 * 24 22 21 28 28 C 1.41994 * 119.59126 * 359.44766 * 21 20 19 29 29 O 1.21920 * 121.40853 * 180.23321 * 28 21 20 30 30 C 1.53715 * 109.61310 * 77.00715 * 7 6 5 31 31 H 1.08990 * 109.47498 * 298.82366 * 1 2 3 32 32 H 1.09003 * 109.46999 * 58.82761 * 1 2 3 33 33 H 1.09003 * 109.46949 * 178.82051 * 1 2 3 34 34 H 1.09003 * 109.47158 * 181.17085 * 3 2 1 35 35 H 1.08992 * 109.47271 * 301.17280 * 3 2 1 36 36 H 1.09001 * 109.46473 * 61.17813 * 3 2 1 37 37 H 1.08997 * 109.89401 * 314.40419 * 4 2 1 38 38 H 1.09000 * 109.96034 * 193.32416 * 4 2 1 39 39 H 1.09000 * 109.44001 * 299.07228 * 5 4 2 40 40 H 1.08999 * 109.41356 * 179.16209 * 5 4 2 41 41 H 1.08998 * 109.04143 * 162.44665 * 6 5 4 42 42 H 1.08997 * 109.04250 * 43.56678 * 6 5 4 43 43 H 1.08996 * 109.44606 * 316.96937 * 7 6 5 44 44 H 1.09006 * 109.47008 * 60.00133 * 11 10 8 45 45 H 1.08994 * 109.47577 * 300.00277 * 11 10 8 46 46 H 1.08004 * 119.64441 * 359.97438 * 13 12 11 47 47 H 1.08005 * 120.23498 * 180.02562 * 16 14 13 48 48 H 1.08000 * 118.57688 * 180.29086 * 20 19 18 49 49 H 1.09001 * 109.47380 * 129.72083 * 22 21 20 50 50 H 0.96696 * 114.00435 * 59.99627 * 23 22 21 51 51 H 1.08998 * 109.89380 * 60.30020 * 30 7 6 52 52 H 1.09005 * 109.89473 * 181.41145 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4981 1.7514 0.0000 4 6 2.5023 -0.9118 1.5070 5 6 2.2742 -2.4123 1.2636 6 6 3.0139 -2.8454 0.0020 7 6 2.2742 -2.4142 -1.2602 8 6 2.7914 -3.1996 -2.4378 9 8 3.2920 -2.6240 -3.3749 10 8 2.6962 -4.5385 -2.4456 11 6 3.2157 -5.2294 -3.6122 12 6 3.0226 -6.7145 -3.4437 13 6 2.4270 -7.2079 -2.3029 14 6 2.2419 -8.5733 -2.1335 15 35 1.4226 -9.2243 -0.5585 16 6 2.6529 -9.4566 -3.1089 17 6 3.2567 -8.9691 -4.2667 18 6 3.4441 -7.5882 -4.4389 19 8 4.0289 -7.1289 -5.5642 20 6 4.4500 -7.9437 -6.5371 21 6 4.3150 -9.2811 -6.4784 22 6 4.8060 -10.1432 -7.6128 23 8 3.6879 -10.7074 -8.3007 24 14 5.8031 -9.1048 -8.7953 25 1 6.9651 -8.5183 -8.0805 26 1 4.9520 -8.0140 -9.3350 27 1 6.2864 -9.9541 -9.9135 28 6 3.7124 -9.8756 -5.3384 29 8 3.5773 -11.0840 -5.2486 30 6 2.5030 -0.9141 -1.5053 31 1 -0.3634 0.4954 0.9002 32 1 -0.3633 0.5320 -0.8793 33 1 -0.3633 -1.0275 -0.0212 34 1 3.5879 1.7428 -0.0210 35 1 2.1219 2.2743 -0.8792 36 1 2.1561 2.2618 0.9004 37 1 1.9547 -0.5925 2.3937 38 1 3.5664 -0.7148 1.6375 39 1 1.2078 -2.6022 1.1422 40 1 2.6488 -2.9787 2.1163 41 1 3.1132 -3.9309 0.0029 42 1 4.0081 -2.3987 0.0017 43 1 1.2077 -2.6033 -1.1382 44 1 4.2780 -5.0107 -3.7209 45 1 2.6826 -4.8927 -4.5013 46 1 2.1008 -6.5249 -1.5324 47 1 2.5082 -10.5187 -2.9767 48 1 4.9145 -7.5092 -7.4099 49 1 5.4308 -10.9438 -7.2167 50 1 3.0875 -10.0512 -8.6802 51 1 3.5674 -0.7175 -1.6343 52 1 1.9559 -0.5955 -2.3926 RHF calculation, no. of doubly occupied orbitals= 73 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_17845584_484008.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 07:51:44 Heat of formation + Delta-G solvation = -171.915198 kcal Electronic energy + Delta-G solvation = -36181.096756 eV Core-core repulsion = 31281.663331 eV Total energy + Delta-G solvation = -4899.433425 eV No. of doubly occupied orbitals = 73 Molecular weight (most abundant/longest-lived isotopes) = 468.065 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -43.36918 -41.74725 -40.17554 -39.90677 -38.04774 -37.79748 -37.13317 -34.64019 -33.69175 -33.16342 -32.24231 -30.73730 -29.24729 -28.43491 -28.30312 -27.47008 -27.08549 -26.01740 -24.84361 -24.41346 -22.49888 -22.07208 -21.14993 -20.66042 -19.63441 -19.07744 -18.64996 -17.99215 -17.75209 -17.62116 -17.39940 -16.78913 -16.46971 -16.24013 -16.17964 -15.81042 -15.63777 -15.41787 -15.30538 -15.25605 -14.67353 -14.50411 -14.49029 -14.30296 -14.04908 -13.98330 -13.88914 -13.77189 -13.65739 -13.28313 -13.22749 -13.13209 -13.00715 -12.81879 -12.50818 -12.44435 -12.28177 -12.17836 -12.04979 -11.85462 -11.80230 -11.78730 -11.69901 -11.52077 -11.46741 -11.27596 -10.71788 -10.68909 -10.54200 -10.44130 -10.39609 -10.11205 -9.59730 -0.86828 -0.72015 0.00809 0.33275 0.93109 1.04139 1.14536 1.34497 1.35527 1.38713 1.49580 1.91197 1.92708 2.02104 2.06887 2.26520 2.66363 2.72041 2.86958 3.17606 3.24692 3.47598 3.59505 3.65651 3.72729 3.83486 3.87287 3.95407 3.96750 4.08466 4.10536 4.24892 4.30180 4.33907 4.40060 4.49861 4.62058 4.63021 4.66084 4.75204 4.77629 4.84113 4.85333 4.91501 4.92597 4.96922 5.01603 5.06871 5.16978 5.27808 5.36964 5.45378 5.47960 5.59370 5.65717 5.72017 5.74665 6.31018 6.67438 6.69807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.460 4.460 2 Si 1.074 2.926 3 C -0.468 4.468 4 C -0.416 4.416 5 C -0.107 4.107 6 C -0.123 4.123 7 C -0.065 4.065 8 C 0.468 3.532 9 O -0.532 6.532 10 O -0.352 6.352 11 C 0.116 3.884 12 C -0.098 4.098 13 C -0.007 4.007 14 C -0.120 4.120 15 Br -0.023 7.023 16 C -0.008 4.008 17 C -0.226 4.226 18 C 0.164 3.836 19 O -0.205 6.205 20 C 0.157 3.843 21 C -0.332 4.332 22 C -0.069 4.069 23 O -0.555 6.555 24 Si 0.973 3.027 25 H -0.235 1.235 26 H -0.213 1.213 27 H -0.267 1.267 28 C 0.426 3.574 29 O -0.489 6.489 30 C -0.409 4.409 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.133 0.867 44 H 0.098 0.902 45 H 0.099 0.901 46 H 0.177 0.823 47 H 0.147 0.853 48 H 0.233 0.767 49 H 0.104 0.896 50 H 0.388 0.612 51 H 0.075 0.925 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.256 7.403 1.481 7.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.568 4.568 2 Si 1.265 2.735 3 C -0.574 4.574 4 C -0.502 4.502 5 C -0.144 4.144 6 C -0.160 4.160 7 C -0.084 4.084 8 C 0.312 3.688 9 O -0.421 6.421 10 O -0.269 6.269 11 C 0.042 3.958 12 C -0.100 4.100 13 C -0.026 4.026 14 C -0.200 4.200 15 Br 0.063 6.937 16 C -0.028 4.028 17 C -0.229 4.229 18 C 0.118 3.882 19 O -0.107 6.107 20 C 0.092 3.908 21 C -0.335 4.335 22 C -0.177 4.177 23 O -0.362 6.362 24 Si 0.792 3.208 25 H -0.158 1.158 26 H -0.136 1.136 27 H -0.192 1.192 28 C 0.312 3.688 29 O -0.372 6.372 30 C -0.491 4.491 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.151 0.849 44 H 0.116 0.884 45 H 0.116 0.884 46 H 0.195 0.805 47 H 0.165 0.835 48 H 0.249 0.751 49 H 0.122 0.878 50 H 0.237 0.763 51 H 0.094 0.906 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.314 6.856 1.409 7.006 hybrid contribution -0.144 -0.415 -0.493 0.660 sum 0.170 6.441 0.917 6.508 Atomic orbital electron populations 1.26250 1.21000 1.04988 1.04530 0.78434 0.65955 0.64735 0.64404 1.26317 1.06407 1.20271 1.04390 1.26417 1.06408 1.02656 1.14725 1.21195 1.01184 0.95722 0.96331 1.21510 0.99760 1.02609 0.92136 1.21115 1.03455 0.93618 0.90210 1.24584 0.75034 0.80265 0.88887 1.90677 1.42307 1.71065 1.38022 1.86418 1.75061 1.21654 1.43769 1.21531 1.01166 0.85674 0.87422 1.18843 1.03804 0.94003 0.93328 1.21242 0.91781 0.93285 0.96299 1.21865 1.06752 0.95496 0.95887 1.96844 1.79297 1.87714 1.29852 1.21134 0.90928 1.00956 0.89744 1.20744 1.09107 0.93306 0.99726 1.18899 0.93275 0.90779 0.85233 1.83143 1.64321 1.38976 1.24309 1.24393 0.88286 0.89177 0.88940 1.22030 1.13460 0.95587 1.02382 1.25028 0.94273 1.03143 0.95218 1.86568 1.38742 1.37861 1.72983 0.85448 0.79367 0.78246 0.77784 1.15788 1.13557 1.19162 1.18695 0.76516 0.88271 0.85313 1.90752 1.49852 1.16706 1.79862 1.26708 1.07198 0.98551 1.16618 0.90970 0.91488 0.90436 0.91460 0.91589 0.91005 0.90054 0.90676 0.90117 0.91331 0.90063 0.91161 0.84896 0.88416 0.88352 0.80532 0.83522 0.75135 0.87776 0.76273 0.90629 0.90512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 3.17 8.65 113.37 0.98 4.16 16 2 Si 1.07 -8.89 11.60 68.60 0.80 -8.10 16 3 C -0.47 2.10 8.65 113.37 0.98 3.08 16 4 C -0.42 3.12 4.98 72.22 0.36 3.48 16 5 C -0.11 0.83 5.61 30.68 0.17 1.00 16 6 C -0.12 0.79 4.80 30.28 0.15 0.93 16 7 C -0.07 0.32 2.32 -11.46 -0.03 0.29 16 8 C 0.47 0.23 7.24 71.24 0.52 0.74 16 9 O -0.53 -3.72 15.76 21.94 0.35 -3.38 16 10 O -0.35 0.66 8.26 -51.41 -0.42 0.23 16 11 C 0.12 -0.28 5.38 71.24 0.38 0.10 16 12 C -0.10 0.15 5.89 -19.78 -0.12 0.03 16 13 C -0.01 0.01 9.10 22.32 0.20 0.21 16 14 C -0.12 -0.15 6.22 22.32 0.14 -0.01 16 15 Br -0.02 -0.02 33.69 -20.37 -0.69 -0.71 16 16 C -0.01 -0.03 9.40 22.45 0.21 0.18 16 17 C -0.23 -1.01 5.89 -20.01 -0.12 -1.13 16 18 C 0.16 0.04 6.74 22.98 0.15 0.19 16 19 O -0.20 0.67 9.21 -2.65 -0.02 0.64 16 20 C 0.16 -0.84 9.99 66.97 0.67 -0.17 16 21 C -0.33 -0.30 5.32 -19.78 -0.11 -0.41 16 22 C -0.07 -0.03 2.46 71.24 0.17 0.15 16 23 O -0.55 -1.95 12.88 -148.98 -1.92 -3.86 16 24 Si 0.97 -6.00 25.30 68.60 1.74 -4.27 16 25 H -0.23 1.67 7.11 99.48 0.71 2.37 16 26 H -0.21 2.33 6.91 99.48 0.69 3.01 16 27 H -0.27 0.27 7.11 99.48 0.71 0.97 16 28 C 0.43 3.38 6.98 25.67 0.18 3.56 16 29 O -0.49 -7.73 16.93 -5.06 -0.09 -7.81 16 30 C -0.41 1.68 3.53 72.22 0.26 1.93 16 31 H 0.07 -0.47 7.96 -2.39 -0.02 -0.49 16 32 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 33 H 0.08 -0.63 7.96 -2.39 -0.02 -0.65 16 34 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 35 H 0.06 -0.24 7.96 -2.39 -0.02 -0.26 16 36 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 37 H 0.08 -0.63 7.99 -2.39 -0.02 -0.65 16 38 H 0.07 -0.50 7.99 -2.39 -0.02 -0.52 16 39 H 0.08 -0.81 7.69 -2.39 -0.02 -0.83 16 40 H 0.07 -0.48 8.14 -2.39 -0.02 -0.50 16 41 H 0.08 -0.56 7.66 -2.39 -0.02 -0.58 16 42 H 0.07 -0.38 7.90 -2.39 -0.02 -0.40 16 43 H 0.13 -1.23 7.69 -2.39 -0.02 -1.25 16 44 H 0.10 -0.28 8.13 -2.38 -0.02 -0.30 16 45 H 0.10 -0.30 8.13 -2.39 -0.02 -0.32 16 46 H 0.18 -0.85 6.96 -2.91 -0.02 -0.87 16 47 H 0.15 0.80 7.81 -2.91 -0.02 0.78 16 48 H 0.23 -3.02 4.64 -2.91 -0.01 -3.04 16 49 H 0.10 0.34 7.96 -2.39 -0.02 0.32 16 50 H 0.39 -2.12 8.70 -74.06 -0.64 -2.76 16 51 H 0.07 -0.13 7.95 -2.39 -0.02 -0.15 16 52 H 0.08 -0.19 7.98 -2.38 -0.02 -0.21 16 Total: 0.00 -22.22 445.00 5.95 -16.26 By element: Atomic # 1 Polarization: -8.40 SS G_CDS: 1.06 Total: -7.34 kcal Atomic # 6 Polarization: 13.17 SS G_CDS: 5.16 Total: 18.33 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: -2.11 Total: -14.18 kcal Atomic # 14 Polarization: -14.90 SS G_CDS: 2.53 Total: -12.36 kcal Atomic # 35 Polarization: -0.02 SS G_CDS: -0.69 Total: -0.71 kcal Total: -22.22 5.95 -16.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_17845584_484008.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.652 kcal (2) G-P(sol) polarization free energy of solvation -22.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds