Wall clock time and date at job start Sat Mar 6 2021 07:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86301 * 109.46718 * 2 1 4 4 H 1.48506 * 109.47302 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47334 * 59.99815 * 3 2 1 6 6 H 1.48500 * 109.47376 * 299.99812 * 3 2 1 7 7 C 1.50701 * 109.47079 * 119.99759 * 2 1 3 8 8 C 1.34542 * 120.20411 * 249.72686 * 7 2 1 9 9 O 1.33714 * 122.84717 * 179.72609 * 8 7 2 10 10 C 1.34876 * 122.41461 * 0.58529 * 9 8 7 11 11 C 1.40418 * 119.67741 * 359.69889 * 10 9 8 12 12 C 1.39385 * 120.23864 * 180.02562 * 11 10 9 13 13 C 1.37848 * 119.52708 * 359.96077 * 12 11 10 14 14 Br 1.89096 * 119.86335 * 180.02562 * 13 12 11 15 15 C 1.38833 * 120.27240 * 0.03824 * 13 12 11 16 16 C 1.37828 * 120.70799 * 359.97438 * 15 13 12 17 17 C 1.50698 * 120.04408 * 179.97438 * 16 15 13 18 18 O 1.45200 * 109.46850 * 0.02562 * 17 16 15 19 19 C 1.34229 * 116.99914 * 180.02562 * 18 17 16 20 20 O 1.20833 * 119.99909 * 359.97438 * 19 18 17 21 21 C 1.50701 * 120.00236 * 180.02562 * 19 18 17 22 22 S 1.81402 * 109.47041 * 179.97438 * 21 19 18 23 23 O 1.42094 * 109.47289 * 289.05166 * 22 21 19 24 24 C 1.76202 * 102.99746 * 179.97438 * 22 21 19 25 25 C 1.38230 * 120.00285 * 269.72763 * 24 22 21 26 26 C 1.38238 * 119.99685 * 179.76894 * 25 24 22 27 27 C 1.38234 * 120.00366 * 0.47941 * 26 25 24 28 28 N 1.48013 * 120.00161 * 179.76835 * 27 26 25 29 29 O 1.21802 * 120.00118 * 180.02562 * 28 27 26 30 30 O 1.21805 * 120.00270 * 0.03044 * 28 27 26 31 31 C 1.38230 * 119.99756 * 359.79842 * 27 26 25 32 32 C 1.38241 * 120.00349 * 359.95094 * 31 27 26 33 33 C 1.41994 * 120.20405 * 70.00700 * 7 2 1 34 34 O 1.21920 * 121.40853 * 359.95478 * 33 7 2 35 35 H 0.96696 * 114.00435 * 299.99868 * 1 2 3 36 36 H 1.09001 * 109.47507 * 240.00284 * 2 1 3 37 37 H 1.08000 * 118.57531 * 0.02562 * 8 7 2 38 38 H 1.08005 * 120.23794 * 179.97438 * 12 11 10 39 39 H 1.08004 * 119.64759 * 179.97438 * 15 13 12 40 40 H 1.09006 * 109.47239 * 120.02323 * 17 16 15 41 41 H 1.08994 * 109.47224 * 240.02103 * 17 16 15 42 42 H 1.09001 * 109.46875 * 299.99346 * 21 19 18 43 43 H 1.08995 * 109.47217 * 59.99854 * 21 19 18 44 44 H 1.08000 * 120.00002 * 0.02562 * 25 24 22 45 45 H 1.08003 * 119.99938 * 180.26059 * 26 25 24 46 46 H 1.07994 * 120.00264 * 179.97438 * 31 27 26 47 47 H 1.07998 * 120.00345 * 179.97438 * 32 31 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0498 1.7565 0.0000 4 1 3.5349 1.7567 0.0006 5 1 1.5548 2.4566 1.2125 6 1 1.5549 2.4566 -1.2125 7 6 1.9313 -0.7104 1.2305 8 6 2.5367 -0.0176 2.2122 9 8 2.9974 -0.5928 3.3280 10 6 2.9001 -1.9195 3.5507 11 6 2.2905 -2.7428 2.5903 12 6 2.1832 -4.1153 2.8086 13 6 2.6805 -4.6587 3.9737 14 35 2.5407 -6.5196 4.2794 15 6 3.2834 -3.8455 4.9238 16 6 3.3948 -2.4871 4.7188 17 6 4.0515 -1.6182 5.7604 18 8 4.4801 -2.4414 6.8771 19 6 5.0874 -1.8158 7.8976 20 8 5.2558 -0.6199 7.8588 21 6 5.5604 -2.6050 9.0911 22 16 6.3345 -1.4840 10.2890 23 8 7.5788 -1.0285 9.7759 24 6 6.8154 -2.5677 11.5924 25 6 5.9457 -2.8220 12.6363 26 6 6.3212 -3.6760 13.6564 27 6 7.5703 -4.2679 13.6378 28 7 7.9743 -5.1783 14.7327 29 8 9.0751 -5.6994 14.7165 30 8 7.2060 -5.4063 15.6499 31 6 8.4422 -4.0091 12.5968 32 6 8.0648 -3.1592 11.5740 33 6 1.7738 -2.1157 1.3583 34 8 1.2341 -2.7764 0.4873 35 1 -0.3934 0.4416 0.7650 36 1 1.7924 -0.5138 -0.8900 37 1 2.6515 1.0499 2.0961 38 1 1.7140 -4.7485 2.0701 39 1 3.6692 -4.2819 5.8333 40 1 4.9166 -1.1188 5.3241 41 1 3.3397 -0.8713 6.1117 42 1 4.7104 -3.1040 9.5566 43 1 6.2875 -3.3503 8.7689 44 1 4.9712 -2.3568 12.6527 45 1 5.6401 -3.8780 14.4699 46 1 9.4182 -4.4712 12.5824 47 1 8.7462 -2.9567 10.7609 RHF calculation, no. of doubly occupied orbitals= 81 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_1791650_484008.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 07:59:08 Heat of formation + Delta-G solvation = -129.997874 kcal Electronic energy + Delta-G solvation = -41616.957321 eV Core-core repulsion = 35567.979226 eV Total energy + Delta-G solvation = -6048.978095 eV No. of doubly occupied orbitals = 81 Molecular weight (most abundant/longest-lived isotopes) = 524.992 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -43.37898 -43.36063 -41.71580 -40.41250 -40.16723 -39.88477 -37.97547 -37.81854 -37.74764 -37.25694 -34.66324 -33.72038 -33.32076 -33.19013 -32.54327 -31.52851 -30.72551 -28.13263 -27.88482 -27.46621 -25.90526 -24.44820 -24.34827 -23.78110 -22.93996 -22.27908 -20.74591 -20.56088 -19.86233 -19.72537 -19.52616 -19.02721 -18.81128 -18.72618 -18.10624 -17.79656 -17.73318 -17.55999 -17.36718 -16.80130 -16.67057 -16.46838 -16.27111 -16.17820 -16.04915 -15.88102 -15.76557 -15.46142 -15.29061 -15.15595 -14.95348 -14.52193 -14.47727 -14.43217 -14.36190 -14.31354 -13.99110 -13.90158 -13.28985 -13.10156 -12.89535 -12.79591 -12.65937 -12.49217 -12.46164 -12.42801 -12.34072 -12.17248 -11.94905 -11.85114 -11.81996 -11.76913 -11.53431 -11.27284 -11.06003 -10.71175 -10.50456 -10.44442 -10.38623 -9.76027 -9.59616 -1.59031 -0.86525 -0.71894 -0.20802 -0.13318 0.01557 0.19113 0.32529 0.38477 0.93678 0.95547 1.05287 1.35185 1.35554 1.39026 1.43944 1.50741 1.93454 2.06640 2.26882 2.58695 2.67818 2.84335 3.16580 3.22229 3.25727 3.36881 3.40870 3.53911 3.65671 3.72014 3.77478 3.84952 3.85736 3.95270 4.03651 4.08787 4.13872 4.14901 4.28201 4.31160 4.36256 4.45072 4.57438 4.57793 4.59326 4.62727 4.64554 4.78560 4.79512 5.00607 5.02613 5.18485 5.33212 5.72426 6.28680 6.32188 6.41334 6.72062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.069 4.069 3 Si 0.972 3.028 4 H -0.236 1.236 5 H -0.208 1.208 6 H -0.269 1.269 7 C -0.333 4.333 8 C 0.160 3.840 9 O -0.202 6.202 10 C 0.166 3.834 11 C -0.226 4.226 12 C -0.009 4.009 13 C -0.121 4.121 14 Br -0.026 7.026 15 C -0.008 4.008 16 C -0.098 4.098 17 C 0.114 3.886 18 O -0.347 6.347 19 C 0.498 3.502 20 O -0.527 6.527 21 C -0.477 4.477 22 S 1.455 4.545 23 O -0.883 6.883 24 C -0.429 4.429 25 C -0.013 4.013 26 C -0.069 4.069 27 C -0.030 4.030 28 N 0.021 4.979 29 O -0.201 6.201 30 O -0.150 6.150 31 C -0.084 4.084 32 C -0.064 4.064 33 C 0.425 3.575 34 O -0.491 6.491 35 H 0.389 0.611 36 H 0.102 0.898 37 H 0.235 0.765 38 H 0.145 0.855 39 H 0.178 0.822 40 H 0.099 0.901 41 H 0.116 0.884 42 H 0.212 0.788 43 H 0.138 0.862 44 H 0.227 0.773 45 H 0.181 0.819 46 H 0.149 0.851 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.585 7.322 3.703 9.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.177 4.177 3 Si 0.790 3.210 4 H -0.159 1.159 5 H -0.130 1.130 6 H -0.194 1.194 7 C -0.335 4.335 8 C 0.094 3.906 9 O -0.105 6.105 10 C 0.120 3.880 11 C -0.229 4.229 12 C -0.029 4.029 13 C -0.201 4.201 14 Br 0.060 6.940 15 C -0.028 4.028 16 C -0.100 4.100 17 C 0.041 3.959 18 O -0.263 6.263 19 C 0.341 3.659 20 O -0.417 6.417 21 C -0.609 4.609 22 S 1.648 4.352 23 O -0.878 6.878 24 C -0.524 4.524 25 C -0.032 4.032 26 C -0.089 4.089 27 C -0.113 4.113 28 N 0.537 4.463 29 O -0.408 6.408 30 O -0.372 6.372 31 C -0.105 4.105 32 C -0.084 4.084 33 C 0.311 3.689 34 O -0.373 6.373 35 H 0.238 0.762 36 H 0.120 0.880 37 H 0.250 0.750 38 H 0.162 0.838 39 H 0.195 0.805 40 H 0.117 0.883 41 H 0.134 0.866 42 H 0.229 0.771 43 H 0.156 0.844 44 H 0.244 0.756 45 H 0.199 0.801 46 H 0.167 0.833 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.364 8.634 2.330 10.428 hybrid contribution 1.718 -2.533 -0.590 3.116 sum -3.646 6.101 1.740 7.317 Atomic orbital electron populations 1.86572 1.17778 1.82078 1.49758 1.25020 0.84903 1.11791 0.95978 0.85478 0.80804 0.71801 0.82944 1.15892 1.13050 1.19350 1.22016 1.12732 0.96205 1.02594 1.24395 0.86455 0.98907 0.80794 1.83143 1.68516 1.20548 1.38249 1.18878 0.95219 0.80547 0.93373 1.20746 1.08247 0.95346 0.98555 1.21125 0.93038 0.93308 0.95402 1.21867 1.07229 0.92838 0.98176 1.96853 1.97475 1.03510 1.96206 1.21241 0.92112 0.90870 0.98532 1.18844 1.03707 0.94015 0.93401 1.21691 1.00539 0.90807 0.82869 1.86386 1.69472 1.42253 1.28200 1.22814 0.73586 0.86313 0.83142 1.90794 1.53846 1.16981 1.80033 1.28241 1.13945 1.14412 1.04328 1.70341 0.97413 0.83704 0.83752 1.93073 1.45507 1.70318 1.78949 1.28791 0.99311 1.10177 1.14119 1.21692 1.01222 0.92165 0.88096 1.21759 0.92483 0.93606 1.01053 1.21660 0.99668 0.99484 0.90471 1.44143 1.00051 1.00064 1.02006 1.94583 1.08830 1.52902 1.84488 1.94529 1.49181 1.65538 1.27911 1.21222 1.00185 0.97251 0.91805 1.21291 0.96740 0.92922 0.97461 1.18726 0.76501 0.89138 0.84539 1.90757 1.36951 1.67560 1.42064 0.76223 0.87999 0.75000 0.83758 0.80462 0.88284 0.86611 0.77067 0.84390 0.75646 0.80138 0.83337 0.83872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.20 12.88 -148.98 -1.92 -3.12 16 2 C -0.07 0.07 2.46 71.24 0.17 0.24 16 3 Si 0.97 -7.30 25.30 68.60 1.74 -5.56 16 4 H -0.24 1.95 7.11 99.48 0.71 2.66 16 5 H -0.21 2.68 6.91 99.48 0.69 3.37 16 6 H -0.27 0.53 7.11 99.48 0.71 1.24 16 7 C -0.33 0.29 5.32 -19.78 -0.11 0.19 16 8 C 0.16 -1.24 9.99 66.97 0.67 -0.57 16 9 O -0.20 1.29 9.21 -2.65 -0.02 1.27 16 10 C 0.17 -0.45 6.74 22.98 0.15 -0.29 16 11 C -0.23 -0.55 5.89 -20.01 -0.12 -0.66 16 12 C -0.01 -0.02 9.40 22.45 0.21 0.19 16 13 C -0.12 0.09 6.22 22.32 0.14 0.23 16 14 Br -0.03 0.01 33.69 -20.37 -0.69 -0.68 16 15 C -0.01 0.04 9.10 22.32 0.20 0.24 16 16 C -0.10 0.50 5.89 -19.78 -0.12 0.39 16 17 C 0.11 -0.88 5.38 71.24 0.38 -0.49 16 18 O -0.35 2.76 8.68 -51.41 -0.45 2.32 16 19 C 0.50 -3.80 7.98 71.24 0.57 -3.23 16 20 O -0.53 0.90 15.61 21.94 0.34 1.24 16 21 C -0.48 7.09 6.48 71.24 0.46 7.55 16 22 S 1.46 -16.95 12.68 -56.49 -0.72 -17.66 16 23 O -0.88 -3.15 16.90 -148.98 -2.52 -5.67 16 24 C -0.43 4.70 5.61 22.27 0.12 4.83 16 25 C -0.01 0.21 9.75 22.27 0.22 0.42 16 26 C -0.07 0.62 9.56 22.27 0.21 0.83 16 27 C -0.03 0.01 6.85 36.37 0.25 0.26 16 28 N 0.02 0.15 4.45 -46.47 -0.21 -0.05 16 29 O -0.20 -2.28 18.45 18.88 0.35 -1.93 16 30 O -0.15 -1.19 18.45 18.88 0.35 -0.84 16 31 C -0.08 0.09 9.56 22.27 0.21 0.30 16 32 C -0.06 0.27 9.44 22.27 0.21 0.48 16 33 C 0.43 2.68 6.98 25.67 0.18 2.86 16 34 O -0.49 -7.17 16.93 -5.06 -0.09 -7.26 16 35 H 0.39 -2.76 8.70 -74.06 -0.64 -3.40 16 36 H 0.10 0.23 7.96 -2.39 -0.02 0.22 16 37 H 0.23 -3.61 4.64 -2.91 -0.01 -3.62 16 38 H 0.14 0.62 7.81 -2.91 -0.02 0.60 16 39 H 0.18 -1.45 6.96 -2.91 -0.02 -1.47 16 40 H 0.10 -0.73 8.13 -2.38 -0.02 -0.75 16 41 H 0.12 -1.20 8.13 -2.39 -0.02 -1.22 16 42 H 0.21 -5.28 8.14 -2.39 -0.02 -5.30 16 43 H 0.14 -1.95 8.14 -2.39 -0.02 -1.97 16 44 H 0.23 -6.45 8.06 -2.91 -0.02 -6.47 16 45 H 0.18 -2.25 7.61 -2.91 -0.02 -2.27 16 46 H 0.15 -0.05 7.61 -2.91 -0.02 -0.07 16 47 H 0.14 -0.37 7.45 -2.91 -0.02 -0.39 16 Total: 0.00 -44.47 452.30 1.42 -43.05 By element: Atomic # 1 Polarization: -20.07 SS G_CDS: 1.21 Total: -18.86 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: 4.03 Total: 13.75 kcal Atomic # 7 Polarization: 0.15 SS G_CDS: -0.21 Total: -0.05 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: -3.95 Total: -13.98 kcal Atomic # 14 Polarization: -7.30 SS G_CDS: 1.74 Total: -5.56 kcal Atomic # 16 Polarization: -16.95 SS G_CDS: -0.72 Total: -17.66 kcal Atomic # 35 Polarization: 0.01 SS G_CDS: -0.69 Total: -0.68 kcal Total: -44.47 1.42 -43.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_1791650_484008.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.948 kcal (2) G-P(sol) polarization free energy of solvation -44.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds