Wall clock time and date at job start Sat Mar 6 2021 07:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86304 * 109.47203 * 2 1 4 4 H 1.48501 * 109.46818 * 299.99808 * 3 2 1 5 5 H 1.48499 * 109.47154 * 59.99741 * 3 2 1 6 6 H 1.48497 * 109.47479 * 180.02562 * 3 2 1 7 7 C 1.50702 * 109.47333 * 240.00042 * 2 1 3 8 8 C 1.34533 * 120.20724 * 119.97842 * 7 2 1 9 9 O 1.33717 * 122.85218 * 180.02562 * 8 7 2 10 10 C 1.34879 * 122.40807 * 359.95795 * 9 8 7 11 11 C 1.40415 * 119.68354 * 0.04031 * 10 9 8 12 12 C 1.39390 * 120.23967 * 179.97438 * 11 10 9 13 13 C 1.37841 * 119.52366 * 0.02562 * 12 11 10 14 14 Br 1.89101 * 119.86136 * 180.02562 * 13 12 11 15 15 C 1.38838 * 120.27797 * 359.78183 * 13 12 11 16 16 C 1.37824 * 120.70416 * 0.45675 * 15 13 12 17 17 C 1.50703 * 120.04269 * 179.80197 * 16 15 13 18 18 O 1.42893 * 109.46784 * 359.72179 * 17 16 15 19 19 C 1.35257 * 116.99912 * 179.97438 * 18 17 16 20 20 O 1.21780 * 119.99767 * 0.27680 * 19 18 17 21 21 C 1.40015 * 120.00161 * 180.02562 * 19 18 17 22 22 S 1.55355 * 119.99917 * 180.02562 * 21 19 18 23 23 O 1.52197 * 102.99944 * 286.87377 * 22 21 19 24 24 C 1.76197 * 103.00071 * 179.97438 * 22 21 19 25 25 C 1.38226 * 120.00148 * 269.73194 * 24 22 21 26 26 C 1.38245 * 120.00124 * 179.76550 * 25 24 22 27 27 C 1.38238 * 119.99335 * 0.48453 * 26 25 24 28 28 N 1.48025 * 119.99559 * 179.77047 * 27 26 25 29 29 O 1.21791 * 119.99840 * 180.02562 * 28 27 26 30 30 O 1.21804 * 119.99833 * 0.02562 * 28 27 26 31 31 C 1.38232 * 120.00393 * 359.78646 * 27 26 25 32 32 C 1.38231 * 120.00012 * 359.95919 * 31 27 26 33 33 C 1.42002 * 120.19752 * 299.99768 * 7 2 1 34 34 O 1.21910 * 121.41031 * 359.95507 * 33 7 2 35 35 H 0.96701 * 113.99255 * 60.00415 * 1 2 3 36 36 H 1.09001 * 109.47313 * 119.99275 * 2 1 3 37 37 H 1.08002 * 118.57510 * 0.02562 * 8 7 2 38 38 H 1.08001 * 120.23445 * 180.02562 * 12 11 10 39 39 H 1.08000 * 119.65167 * 180.25836 * 15 13 12 40 40 H 1.08997 * 109.47036 * 239.72002 * 17 16 15 41 41 H 1.08998 * 109.46923 * 119.72363 * 17 16 15 42 42 H 1.07999 * 120.00009 * 0.02562 * 21 19 18 43 43 H 1.07999 * 120.00420 * 359.97438 * 25 24 22 44 44 H 1.07997 * 119.99829 * 180.25025 * 26 25 24 45 45 H 1.07998 * 120.00054 * 179.97438 * 31 27 26 46 46 H 1.08003 * 120.00182 * 179.97438 * 32 31 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 1 1.5551 2.4564 -1.2126 5 1 1.5550 2.4565 1.2125 6 1 3.5350 1.7566 -0.0006 7 6 1.9314 -0.7104 -1.2305 8 6 2.7048 -0.0605 -2.1189 9 8 3.1787 -0.6385 -3.2276 10 6 2.9171 -1.9240 -3.5411 11 6 2.1191 -2.6999 -2.6850 12 6 1.8409 -4.0295 -2.9979 13 6 2.3552 -4.5773 -4.1535 14 35 1.9832 -6.3798 -4.5876 15 6 3.1410 -3.8097 -5.0025 16 6 3.4267 -2.4956 -4.7010 17 6 4.2849 -1.6774 -5.6311 18 8 4.6827 -2.4817 -6.7432 19 6 5.4626 -1.8934 -7.6787 20 8 5.7981 -0.7301 -7.5477 21 6 5.8884 -2.6235 -8.7950 22 16 6.7847 -1.9479 -9.8691 23 8 5.8155 -1.0227 -10.5910 24 6 7.0450 -3.2404 -11.0380 25 6 8.1278 -4.0886 -10.9008 26 6 8.3294 -5.1056 -11.8152 27 6 7.4537 -5.2681 -12.8723 28 7 7.6723 -6.3540 -13.8543 29 8 6.9011 -6.4969 -14.7860 30 8 8.6236 -7.1046 -13.7304 31 6 6.3740 -4.4164 -13.0127 32 6 6.1695 -3.4027 -12.0955 33 6 1.5910 -2.0699 -1.4593 34 8 0.8929 -2.6906 -0.6760 35 1 -0.3932 0.4417 -0.7651 36 1 1.7924 -0.5137 0.8900 37 1 2.9536 0.9731 -1.9285 38 1 1.2267 -4.6260 -2.3396 39 1 3.5353 -4.2480 -5.9074 40 1 5.1703 -1.3310 -5.0980 41 1 3.7168 -0.8186 -5.9885 42 1 5.5938 -3.6562 -8.9093 43 1 8.8145 -3.9589 -10.0774 44 1 9.1731 -5.7708 -11.7056 45 1 5.6901 -4.5431 -13.8389 46 1 5.3262 -2.7370 -12.2054 RHF calculation, no. of doubly occupied orbitals= 81 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_1791650_484008.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 07:59:22 Heat of formation + Delta-G solvation = -186.008131 kcal Electronic energy + Delta-G solvation = -41490.571903 eV Core-core repulsion = 35452.820760 eV Total energy + Delta-G solvation = -6037.751143 eV No. of doubly occupied orbitals = 81 Molecular weight (most abundant/longest-lived isotopes) = 523.984 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -42.40888 -42.05932 -39.37609 -39.17882 -38.97137 -38.49258 -37.06431 -36.47693 -35.33230 -33.63466 -32.61844 -32.36206 -32.02322 -31.75705 -31.06328 -29.75348 -28.76205 -26.67871 -26.58032 -26.31928 -24.84919 -23.54300 -22.90579 -22.33655 -21.48525 -20.47038 -19.74627 -19.18176 -18.59303 -18.56143 -18.16128 -17.51255 -17.43961 -16.97443 -16.80414 -16.37137 -15.81264 -15.69402 -15.64508 -15.37263 -15.33972 -15.19806 -15.14957 -15.05327 -14.66818 -14.56466 -14.26843 -13.83692 -13.69490 -13.65157 -13.49412 -13.37402 -13.06632 -12.63399 -12.52246 -12.51250 -12.08084 -11.88054 -11.72257 -11.62634 -11.52644 -11.37931 -11.23637 -11.12238 -11.09455 -11.07506 -10.95482 -10.74065 -10.56328 -10.38218 -9.98134 -9.84938 -9.63075 -9.44986 -9.27351 -9.17711 -9.02113 -8.84787 -8.57738 -7.59576 -6.19345 -0.06680 0.11236 0.28012 0.96496 1.18924 1.28937 1.46577 1.52817 1.54716 1.75877 1.83749 1.96487 2.32490 2.41320 2.98867 3.27959 3.46737 3.54024 3.73434 3.88139 4.00365 4.14962 4.21573 4.36630 4.56136 4.62419 4.64345 4.73250 4.82088 4.86538 4.95687 5.04306 5.14904 5.27570 5.32891 5.36585 5.39062 5.50561 5.61247 5.62385 5.72085 5.74940 5.75919 5.86543 5.92726 5.94974 6.11770 6.39316 6.46739 6.68990 6.70388 7.09785 7.15338 7.24404 7.28638 7.74957 7.90646 9.46597 Molecular weight = 523.98amu Principal moments of inertia in cm(-1) A = 0.006171 B = 0.001144 C = 0.000986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4536.498799 B =24459.581911 C =28399.547577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.528 6.528 2 C -0.048 4.048 3 Si 0.923 3.077 4 H -0.242 1.242 5 H -0.240 1.240 6 H -0.241 1.241 7 C -0.323 4.323 8 C 0.137 3.863 9 O -0.206 6.206 10 C 0.156 3.844 11 C -0.216 4.216 12 C -0.008 4.008 13 C -0.118 4.118 14 Br -0.034 7.034 15 C -0.011 4.011 16 C -0.088 4.088 17 C 0.117 3.883 18 O -0.374 6.374 19 C 0.549 3.451 20 O -0.613 6.613 21 C -1.032 5.032 22 S 1.475 4.525 23 O -0.915 6.915 24 C -0.374 4.374 25 C -0.057 4.057 26 C -0.077 4.077 27 C -0.039 4.039 28 N 0.032 4.968 29 O -0.172 6.172 30 O -0.169 6.169 31 C -0.075 4.075 32 C -0.057 4.057 33 C 0.438 3.562 34 O -0.445 6.445 35 H 0.373 0.627 36 H 0.121 0.879 37 H 0.192 0.808 38 H 0.152 0.848 39 H 0.164 0.836 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.113 0.887 43 H 0.156 0.844 44 H 0.150 0.850 45 H 0.146 0.854 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.375 1.118 14.534 14.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.332 6.332 2 C -0.158 4.158 3 Si 0.744 3.256 4 H -0.166 1.166 5 H -0.163 1.163 6 H -0.165 1.165 7 C -0.326 4.326 8 C 0.071 3.929 9 O -0.110 6.110 10 C 0.110 3.890 11 C -0.219 4.219 12 C -0.027 4.027 13 C -0.197 4.197 14 Br 0.052 6.948 15 C -0.030 4.030 16 C -0.089 4.089 17 C 0.042 3.958 18 O -0.294 6.294 19 C 0.413 3.587 20 O -0.517 6.517 21 C -1.159 5.159 22 S 1.674 4.326 23 O -0.911 6.911 24 C -0.465 4.465 25 C -0.077 4.077 26 C -0.097 4.097 27 C -0.122 4.122 28 N 0.549 4.451 29 O -0.386 6.386 30 O -0.384 6.384 31 C -0.096 4.096 32 C -0.077 4.077 33 C 0.320 3.680 34 O -0.324 6.324 35 H 0.219 0.781 36 H 0.138 0.862 37 H 0.208 0.792 38 H 0.170 0.830 39 H 0.181 0.819 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.132 0.868 43 H 0.173 0.827 44 H 0.168 0.832 45 H 0.164 0.836 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.092 2.411 15.654 15.876 hybrid contribution -2.384 -1.678 -1.047 3.098 sum -3.476 0.733 14.607 15.033 Atomic orbital electron populations 1.86585 1.16754 1.81445 1.48404 1.24574 0.85446 1.08972 0.96839 0.86133 0.81029 0.75582 0.82819 1.16565 1.16315 1.16488 1.22025 1.09201 0.98866 1.02531 1.23768 0.89784 0.96953 0.82414 1.83141 1.64393 1.24871 1.38549 1.18990 0.95247 0.80918 0.93820 1.20663 1.05474 0.96201 0.99562 1.20987 0.94884 0.92786 0.94088 1.21814 1.05546 0.93375 0.98997 1.96759 1.94377 1.09828 1.93848 1.21200 0.91968 0.91394 0.98466 1.19233 1.01280 0.94741 0.93659 1.20730 0.96946 0.91926 0.86246 1.86193 1.66560 1.44383 1.32248 1.17706 0.75500 0.84675 0.80781 1.90728 1.62710 1.18681 1.79585 1.26138 1.54848 1.13489 1.21447 1.67041 1.09344 0.76600 0.79577 1.94512 1.66876 1.57058 1.72619 1.29529 0.96342 1.11535 1.09059 1.20985 0.96852 0.92125 0.97700 1.21149 0.98099 0.98517 0.91914 1.21181 1.02612 0.93740 0.94680 1.43762 0.99293 1.01045 1.00951 1.94510 1.42492 1.77561 1.24027 1.94495 1.21805 1.41286 1.80794 1.21175 0.95067 0.93364 0.99951 1.21367 0.99081 0.95157 0.92086 1.18149 0.79169 0.86762 0.83895 1.90740 1.30722 1.65781 1.45190 0.78078 0.86152 0.79222 0.83019 0.81887 0.90299 0.90494 0.86846 0.82688 0.83222 0.83621 0.83068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -4.78 12.52 -36.36 -0.46 -5.24 16 2 C -0.05 -0.37 2.54 36.01 0.09 -0.28 16 3 Si 0.92 5.03 25.09 -169.99 -4.26 0.76 16 4 H -0.24 -1.24 7.11 56.52 0.40 -0.84 16 5 H -0.24 -1.54 7.11 56.52 0.40 -1.14 16 6 H -0.24 -1.27 7.11 56.52 0.40 -0.87 16 7 C -0.32 -3.10 5.40 -104.49 -0.56 -3.66 16 8 C 0.14 1.15 10.00 29.42 0.29 1.45 16 9 O -0.21 -2.31 9.21 5.65 0.05 -2.26 16 10 C 0.16 2.02 6.74 -38.48 -0.26 1.76 16 11 C -0.22 -2.77 5.89 -104.84 -0.62 -3.38 16 12 C -0.01 -0.09 9.40 -39.30 -0.37 -0.46 16 13 C -0.12 -1.52 6.22 -39.50 -0.25 -1.77 16 14 Br -0.03 -0.40 33.69 -68.01 -2.29 -2.69 16 15 C -0.01 -0.16 9.10 -39.51 -0.36 -0.52 16 16 C -0.09 -1.29 5.89 -104.49 -0.62 -1.91 16 17 C 0.12 2.07 5.30 36.01 0.19 2.26 16 18 O -0.37 -8.16 8.58 -42.05 -0.36 -8.52 16 19 C 0.55 13.83 7.63 31.40 0.24 14.07 16 20 O -0.61 -16.37 16.06 -19.47 -0.31 -16.69 16 21 C -1.03 -24.90 8.93 31.40 0.28 -24.62 16 22 S 1.48 30.71 12.78 -107.50 -1.37 29.34 16 23 O -0.91 -25.21 17.08 -35.23 -0.60 -25.81 16 24 C -0.37 -6.57 5.35 -39.58 -0.21 -6.78 16 25 C -0.06 -0.78 9.75 -39.58 -0.39 -1.17 16 26 C -0.08 -1.05 9.56 -39.58 -0.38 -1.43 16 27 C -0.04 -0.62 6.85 -79.95 -0.55 -1.16 16 28 N 0.03 0.53 4.45 33.96 0.15 0.68 16 29 O -0.17 -2.92 18.45 -29.46 -0.54 -3.46 16 30 O -0.17 -2.75 18.45 -29.46 -0.54 -3.29 16 31 C -0.08 -1.21 9.56 -39.59 -0.38 -1.59 16 32 C -0.06 -1.04 9.46 -39.58 -0.37 -1.41 16 33 C 0.44 5.52 6.91 -34.33 -0.24 5.28 16 34 O -0.45 -6.70 16.66 3.87 0.06 -6.64 16 35 H 0.37 2.02 8.70 45.56 0.40 2.42 16 36 H 0.12 0.93 7.96 -51.93 -0.41 0.52 16 37 H 0.19 0.97 4.66 -52.49 -0.24 0.73 16 38 H 0.15 1.75 7.81 -52.49 -0.41 1.34 16 39 H 0.16 2.53 6.97 -52.49 -0.37 2.16 16 40 H 0.08 1.33 8.13 -51.93 -0.42 0.91 16 41 H 0.08 1.39 8.13 -51.93 -0.42 0.97 16 42 H 0.11 2.78 7.87 -45.46 -0.36 2.42 16 43 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 44 H 0.15 1.66 7.61 -52.49 -0.40 1.26 16 45 H 0.15 2.08 7.61 -52.49 -0.40 1.68 16 46 H 0.15 2.97 7.24 -52.48 -0.38 2.59 16 LS Contribution 445.55 15.07 6.71 6.71 Total: -1.00 -36.33 445.55 -10.85 -47.19 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -2.64 Total: 15.24 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: -4.45 Total: -25.32 kcal Atomic # 7 Polarization: 0.53 SS G_CDS: 0.15 Total: 0.68 kcal Atomic # 8 Polarization: -69.21 SS G_CDS: -2.70 Total: -71.91 kcal Atomic # 14 Polarization: 5.03 SS G_CDS: -4.26 Total: 0.76 kcal Atomic # 16 Polarization: 30.71 SS G_CDS: -1.37 Total: 29.34 kcal Atomic # 35 Polarization: -0.40 SS G_CDS: -2.29 Total: -2.69 kcal Total LS contribution 6.71 Total: 6.71 kcal Total: -36.33 -10.85 -47.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_1791650_484008.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.823 kcal (2) G-P(sol) polarization free energy of solvation -36.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds