Wall clock time and date at job start Sat Mar 6 2021 04:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86299 * 109.46911 * 2 1 4 4 C 1.86301 * 109.46963 * 240.00129 * 2 1 3 5 5 C 1.86800 * 109.47066 * 120.00103 * 2 1 3 6 6 C 1.38349 * 119.92218 * 90.00102 * 5 2 1 7 7 C 1.38393 * 120.30018 * 179.97438 * 6 5 2 8 8 C 1.37919 * 120.14964 * 359.97438 * 7 6 5 9 9 C 1.39648 * 119.85090 * 0.02562 * 8 7 6 10 10 C 1.47726 * 120.14956 * 180.02562 * 9 8 7 11 11 O 1.21473 * 119.99832 * 179.97438 * 10 9 8 12 12 O 1.34712 * 120.00272 * 359.97438 * 10 9 8 13 13 C 1.45200 * 117.00055 * 180.02562 * 12 10 9 14 14 C 1.50695 * 109.46826 * 180.02562 * 13 12 10 15 15 C 1.37827 * 120.04362 * 359.72983 * 14 13 12 16 16 C 1.38836 * 120.70538 * 179.76346 * 15 14 13 17 17 Br 1.89102 * 119.86412 * 180.25681 * 16 15 14 18 18 C 1.37856 * 120.27474 * 0.48464 * 16 15 14 19 19 C 1.39384 * 119.52288 * 359.77191 * 18 16 15 20 20 C 1.38980 * 120.04003 * 179.97438 * 14 13 12 21 21 O 1.34881 * 120.98245 * 0.02562 * 20 14 13 22 22 C 1.33713 * 122.41380 * 180.02562 * 21 20 14 23 23 C 1.34543 * 122.84742 * 359.95943 * 22 21 20 24 24 C 1.50697 * 120.19833 * 180.02562 * 23 22 21 25 25 O 1.42903 * 109.47076 * 119.98029 * 24 23 22 26 26 Si 1.86297 * 109.47705 * 359.97438 * 24 23 22 27 27 H 1.48502 * 109.46980 * 59.99499 * 26 24 23 28 28 H 1.48495 * 109.47586 * 179.97438 * 26 24 23 29 29 H 1.48500 * 109.46998 * 300.00307 * 26 24 23 30 30 C 1.41993 * 119.59366 * 0.02562 * 23 22 21 31 31 O 1.21918 * 121.40555 * 179.97438 * 30 23 22 32 32 C 1.37966 * 119.92340 * 269.72432 * 5 2 1 33 33 H 1.09000 * 109.47064 * 299.99897 * 1 2 3 34 34 H 1.09002 * 109.47704 * 59.99846 * 1 2 3 35 35 H 1.08996 * 109.47221 * 180.02562 * 1 2 3 36 36 H 1.09001 * 109.47058 * 180.02562 * 3 2 1 37 37 H 1.09002 * 109.47329 * 300.00067 * 3 2 1 38 38 H 1.09000 * 109.47172 * 60.00169 * 3 2 1 39 39 H 1.08993 * 109.47131 * 300.00341 * 4 2 1 40 40 H 1.09002 * 109.46890 * 59.99526 * 4 2 1 41 41 H 1.08998 * 109.47144 * 179.97438 * 4 2 1 42 42 H 1.07999 * 119.85193 * 359.97438 * 6 5 2 43 43 H 1.08000 * 119.91966 * 179.97438 * 7 6 5 44 44 H 1.08001 * 120.07374 * 179.97438 * 8 7 6 45 45 H 1.09001 * 109.46720 * 299.99897 * 13 12 10 46 46 H 1.08995 * 109.47319 * 59.99871 * 13 12 10 47 47 H 1.07996 * 119.64837 * 359.97016 * 15 14 13 48 48 H 1.08001 * 120.23595 * 179.74793 * 18 16 15 49 49 H 1.07992 * 118.57496 * 179.97438 * 22 21 20 50 50 H 1.09003 * 109.47360 * 239.97548 * 24 23 22 51 51 H 0.96707 * 113.99633 * 300.00121 * 25 24 23 52 52 H 1.07997 * 120.07683 * 0.02562 * 32 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4857 -0.8806 1.5252 6 6 2.7157 -2.2444 1.4891 7 6 3.1775 -2.9046 2.6143 8 6 3.4120 -2.2058 3.7801 9 6 3.1819 -0.8291 3.8235 10 6 3.4314 -0.0741 5.0685 11 8 3.2308 1.1235 5.1031 12 8 3.8814 -0.7136 6.1654 13 6 4.1039 0.0916 7.3531 14 6 4.6032 -0.7882 8.4700 15 6 4.7724 -2.1399 8.2606 16 6 5.2362 -2.9624 9.2785 17 35 5.4666 -4.8126 8.9629 18 6 5.5252 -2.4366 10.5197 19 6 5.3528 -1.0719 10.7445 20 6 4.8888 -0.2384 9.7141 21 8 4.7258 1.0806 9.9443 22 6 4.9921 1.6396 11.1294 23 6 5.4415 0.9353 12.1840 24 6 5.7221 1.6268 13.4933 25 8 4.8982 1.0630 14.5158 26 14 5.3500 3.4447 13.3278 27 1 3.9208 3.6267 12.9682 28 1 5.6259 4.1259 14.6181 29 1 6.2062 4.0304 12.2652 30 6 5.6497 -0.4634 12.0558 31 8 6.0563 -1.1334 12.9897 32 6 2.7205 -0.1686 2.6834 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8899 35 1 -0.3633 -1.0276 0.0005 36 1 3.5740 1.7565 -0.0005 37 1 2.1206 2.2703 -0.8900 38 1 2.1206 2.2703 0.8900 39 1 2.1206 -1.9058 -1.5212 40 1 2.1205 -0.3644 -2.4111 41 1 3.5740 -0.8778 -1.5214 42 1 2.5341 -2.7963 0.5787 43 1 3.3546 -3.9694 2.5794 44 1 3.7720 -2.7224 4.6576 45 1 4.8459 0.8603 7.1371 46 1 3.1682 0.5637 7.6525 47 1 4.5449 -2.5633 7.2935 48 1 5.8821 -3.0777 11.3122 49 1 4.8397 2.7024 11.2451 50 1 6.7712 1.4932 13.7572 51 1 3.9496 1.1459 14.3468 52 1 2.5444 0.8966 2.7090 RHF calculation, no. of doubly occupied orbitals= 76 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_18329660_484008.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 04:41:18 Heat of formation + Delta-G solvation = -133.529537 kcal Electronic energy + Delta-G solvation = -37732.728662 eV Core-core repulsion = 32605.818961 eV Total energy + Delta-G solvation = -5126.909701 eV No. of doubly occupied orbitals = 76 Molecular weight (most abundant/longest-lived isotopes) = 490.050 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -43.37445 -41.76744 -40.17674 -40.02449 -39.48557 -37.88979 -37.63256 -34.68654 -33.73620 -33.22125 -32.33377 -31.85593 -30.74909 -29.36702 -28.51174 -28.26034 -28.18583 -27.46540 -26.05101 -25.09179 -24.43304 -23.28598 -22.53128 -21.95138 -20.74168 -19.65862 -19.22801 -18.75943 -18.22223 -18.01760 -17.62060 -17.51158 -17.08857 -16.75352 -16.49019 -16.26304 -16.17550 -15.87681 -15.67637 -15.57304 -15.30033 -15.07840 -14.92498 -14.53896 -14.50894 -14.44035 -14.14611 -14.05633 -14.01427 -13.92696 -13.73816 -13.49968 -13.34503 -13.13343 -13.12680 -12.96913 -12.84747 -12.78887 -12.47352 -12.44193 -12.34163 -12.13311 -11.86627 -11.83167 -11.75602 -11.53434 -11.28988 -10.95148 -10.85423 -10.75497 -10.74984 -10.46871 -10.35181 -10.00169 -9.83142 -9.59672 -0.87513 -0.73099 -0.32617 0.00180 0.31441 0.32864 0.91974 1.04214 1.26897 1.37716 1.38876 1.41830 1.46896 1.80356 1.91344 2.02318 2.12223 2.26071 2.65133 2.66727 2.83238 2.87043 3.15307 3.23158 3.43082 3.53794 3.63534 3.71134 3.84600 3.92979 3.96184 4.07175 4.07267 4.14873 4.24194 4.31530 4.32419 4.49107 4.56279 4.61508 4.61936 4.75624 4.77254 4.83979 4.85117 4.88866 4.89718 4.93551 4.94104 4.95460 4.99244 5.11320 5.28239 5.41144 5.46461 5.60773 5.68710 5.71576 5.73346 5.93754 6.32100 6.52640 6.68427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.465 4.465 2 Si 1.130 2.870 3 C -0.471 4.471 4 C -0.457 4.457 5 C -0.395 4.395 6 C -0.053 4.053 7 C -0.148 4.148 8 C -0.057 4.057 9 C -0.162 4.162 10 C 0.516 3.484 11 O -0.530 6.530 12 O -0.348 6.348 13 C 0.118 3.882 14 C -0.099 4.099 15 C -0.008 4.008 16 C -0.120 4.120 17 Br -0.023 7.023 18 C -0.006 4.006 19 C -0.225 4.225 20 C 0.166 3.834 21 O -0.205 6.205 22 C 0.156 3.844 23 C -0.331 4.331 24 C -0.068 4.068 25 O -0.553 6.553 26 Si 0.970 3.030 27 H -0.220 1.220 28 H -0.267 1.267 29 H -0.227 1.227 30 C 0.426 3.574 31 O -0.484 6.484 32 C -0.038 4.038 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.154 0.846 43 H 0.152 0.848 44 H 0.148 0.852 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.174 0.826 48 H 0.148 0.852 49 H 0.231 0.769 50 H 0.108 0.892 51 H 0.387 0.613 52 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.904 1.878 -7.856 8.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.571 4.571 2 Si 1.317 2.683 3 C -0.577 4.577 4 C -0.565 4.565 5 C -0.434 4.434 6 C -0.071 4.071 7 C -0.166 4.166 8 C -0.075 4.075 9 C -0.163 4.163 10 C 0.363 3.637 11 O -0.421 6.421 12 O -0.264 6.264 13 C 0.045 3.955 14 C -0.100 4.100 15 C -0.028 4.028 16 C -0.200 4.200 17 Br 0.063 6.937 18 C -0.026 4.026 19 C -0.228 4.228 20 C 0.120 3.880 21 O -0.108 6.108 22 C 0.091 3.909 23 C -0.334 4.334 24 C -0.176 4.176 25 O -0.360 6.360 26 Si 0.788 3.212 27 H -0.143 1.143 28 H -0.191 1.191 29 H -0.150 1.150 30 C 0.312 3.688 31 O -0.366 6.366 32 C -0.056 4.056 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.172 0.828 43 H 0.169 0.831 44 H 0.166 0.834 45 H 0.120 0.880 46 H 0.120 0.880 47 H 0.192 0.808 48 H 0.166 0.834 49 H 0.246 0.754 50 H 0.126 0.874 51 H 0.235 0.765 52 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.316 2.008 -7.370 7.982 hybrid contribution -0.025 -0.173 0.912 0.929 sum -2.341 1.835 -6.458 7.110 Atomic orbital electron populations 1.26305 1.21596 1.04742 1.04443 0.77127 0.65174 0.64154 0.61815 1.26392 1.06449 1.20260 1.04597 1.26205 1.06563 1.08674 1.15073 1.27964 1.04931 1.00225 1.10254 1.21827 0.91934 0.94412 0.98902 1.21627 1.00472 1.01662 0.92811 1.21698 0.94252 0.92034 0.99534 1.19314 1.10536 0.95045 0.91377 1.21495 0.72759 0.85732 0.83734 1.90847 1.49780 1.16660 1.84768 1.86419 1.77273 1.42302 1.20437 1.21596 1.03150 0.91077 0.79725 1.18799 1.05569 0.94228 0.91414 1.21202 0.91401 0.90719 0.99447 1.21855 1.08611 0.93122 0.96404 1.96842 1.96372 1.04255 1.96240 1.21139 0.92148 0.93362 0.95996 1.20760 1.09997 0.95435 0.96601 1.18862 0.95525 0.80686 0.92945 1.83142 1.72696 1.21446 1.33478 1.24303 0.87565 0.98818 0.80203 1.22068 1.14597 0.96420 1.00271 1.25035 0.99190 1.09389 0.83993 1.86572 1.21701 1.83269 1.44416 0.85488 0.82844 0.70939 0.81899 1.14285 1.19143 1.15037 1.18657 0.75370 0.88935 0.85871 1.90762 1.38122 1.66411 1.41335 1.21385 0.92536 1.00489 0.91166 0.91807 0.90651 0.90860 0.91361 0.90553 0.91649 0.90225 0.90640 0.91018 0.82833 0.83073 0.83449 0.88006 0.87950 0.80843 0.83425 0.75373 0.87418 0.76461 0.85089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.32 8.65 113.37 0.98 3.30 16 2 Si 1.13 -8.32 12.31 68.60 0.84 -7.47 16 3 C -0.47 1.83 8.52 113.37 0.97 2.80 16 4 C -0.46 3.37 8.53 113.37 0.97 4.34 16 5 C -0.39 1.28 4.59 22.23 0.10 1.39 16 6 C -0.05 0.26 9.29 22.33 0.21 0.47 16 7 C -0.15 0.63 10.03 22.23 0.22 0.86 16 8 C -0.06 0.11 9.62 22.53 0.22 0.32 16 9 C -0.16 -0.33 5.87 -20.10 -0.12 -0.44 16 10 C 0.52 2.12 7.90 70.33 0.56 2.68 16 11 O -0.53 -4.78 16.14 19.92 0.32 -4.46 16 12 O -0.35 -0.10 7.93 -56.21 -0.45 -0.55 16 13 C 0.12 -0.19 5.39 71.23 0.38 0.19 16 14 C -0.10 0.10 5.89 -19.79 -0.12 -0.01 16 15 C -0.01 0.01 9.10 22.32 0.20 0.21 16 16 C -0.12 -0.18 6.22 22.32 0.14 -0.04 16 17 Br -0.02 -0.03 33.69 -20.37 -0.69 -0.71 16 18 C -0.01 -0.03 9.40 22.46 0.21 0.18 16 19 C -0.23 -1.00 5.89 -20.01 -0.12 -1.12 16 20 C 0.17 0.07 6.74 22.98 0.15 0.22 16 21 O -0.20 0.63 9.21 -2.69 -0.02 0.61 16 22 C 0.16 -0.81 10.00 66.97 0.67 -0.14 16 23 C -0.33 -0.27 5.40 -19.78 -0.11 -0.38 16 24 C -0.07 -0.01 2.54 71.24 0.18 0.17 16 25 O -0.55 -2.28 12.52 -147.91 -1.85 -4.13 16 26 Si 0.97 -5.99 25.09 68.60 1.72 -4.26 16 27 H -0.22 2.10 7.11 99.48 0.71 2.81 16 28 H -0.27 0.26 7.11 99.48 0.71 0.97 16 29 H -0.23 1.90 7.11 99.48 0.71 2.61 16 30 C 0.43 3.29 6.91 25.67 0.18 3.47 16 31 O -0.48 -7.52 16.66 -3.98 -0.07 -7.58 16 32 C -0.04 -0.04 8.84 22.54 0.20 0.16 16 33 H 0.06 -0.21 7.96 -2.39 -0.02 -0.23 16 34 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 35 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 36 H 0.07 -0.22 7.96 -2.39 -0.02 -0.23 16 37 H 0.08 -0.34 7.96 -2.39 -0.02 -0.36 16 38 H 0.06 -0.17 7.67 -2.39 -0.02 -0.19 16 39 H 0.08 -0.70 7.67 -2.39 -0.02 -0.72 16 40 H 0.07 -0.54 7.96 -2.39 -0.02 -0.55 16 41 H 0.07 -0.48 7.96 -2.39 -0.02 -0.50 16 42 H 0.15 -1.58 7.40 -2.91 -0.02 -1.60 16 43 H 0.15 -1.33 8.06 -2.91 -0.02 -1.35 16 44 H 0.15 -0.78 7.61 -2.91 -0.02 -0.80 16 45 H 0.10 -0.25 8.14 -2.39 -0.02 -0.27 16 46 H 0.10 -0.27 8.14 -2.39 -0.02 -0.29 16 47 H 0.17 -0.70 6.96 -2.91 -0.02 -0.72 16 48 H 0.15 0.80 7.81 -2.91 -0.02 0.77 16 49 H 0.23 -2.89 4.66 -2.91 -0.01 -2.91 16 50 H 0.11 0.22 7.96 -2.39 -0.02 0.20 16 51 H 0.39 -1.60 8.70 -74.05 -0.64 -2.24 16 52 H 0.13 0.14 7.00 -2.91 -0.02 0.12 16 Total: 0.00 -23.28 463.69 7.00 -16.29 By element: Atomic # 1 Polarization: -7.43 SS G_CDS: 1.10 Total: -6.33 kcal Atomic # 6 Polarization: 12.53 SS G_CDS: 6.08 Total: 18.61 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -2.07 Total: -16.11 kcal Atomic # 14 Polarization: -14.30 SS G_CDS: 2.57 Total: -11.74 kcal Atomic # 35 Polarization: -0.03 SS G_CDS: -0.69 Total: -0.71 kcal Total: -23.28 7.00 -16.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_18329660_484008.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.243 kcal (2) G-P(sol) polarization free energy of solvation -23.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds